Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008995

Physical Location & Seq

Genomic Coordinates Forward (+)

57374760 .. 57376880

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004224

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGATGTCATGAAGTTGATGATGAGTGACTATAATGTGGAGACAATAAATGATGGGCTCAATGAGTTCAATGTGGAATTCCATGGTCCAAAAGAAAGCATTTATGAAGGCGGAGTATGGAAAATTCGTGTGGAGCTTCCAGATGCATATCCATACAAGTCTCCTTCTATTGGCTTCATGAACAAGATTTTTCATCCGAACGTTGATGAGCTATCTGGTTCTGTCTGCTTAGATGTAATTAACCAATCGTGGAGTCCAATGTTTGACCTTCTAAATGTTTTTGAAGTTTTCCTTCCACAACTGTTGCTCTATCCAAATCCATCAGACCCACTCAATGGTGATGCAGCGTCATTGATGATGAAGGACCGCAAACTGTACGATCAGAAAGTGAAAGAGTATTGTGAAAAATATGCAAAGAAGGAGCATATTACTAATACAACAGCAGAAGAAGAAAGTGGTGATGAGAATATTAGTGATGAAGGAAGCGATTCGAGTGACGATGACATTGCTGGACATGCAGACCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

176

Amino Acids

19.81

Weight (kDa)

4.3

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	3 - 133	3.2e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46030 AT2G46030 AT2G46030 AT2G46030
fragaria_vesca	FvH4_5g05040
malus_domestica	MD00G1171400.v1.1 MD06G1177800.v1.1 MD06G1179100.v1.1 MD14G1184400.v1.1
prunus_persica	Prupe.5G177000_v2.0.a1
pyrus_communis	pycom06g15820 pycom14g15340
rosa_chinensis	RchiOBHm_Chr7g0194001
rosa_laevigata	RLG00000004224
rosa_multiflora	Rmu_sc0033848.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261630
rosa_rugosa	Rorug07G0013100
rosa_samantha	Rh7AG140300 Rh7BG140800 Rh7CG144300 Rh7DG141600
rosa_wichuraiana	Rw7G011970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	335
AciI	CCGC	2 cut(s)	111, 367
AclI	AACGTT	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	77, 123
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	170, 335
AgsI	TTSAA	2 cut(s)	70, 284
AluBI	AGCT	2 cut(s)	136, 211
AluI	AGCT	2 cut(s)	136, 211
Alw26I	GTCTC	2 cut(s)	35, 165
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	2 cut(s)	77, 123
Asp700I	GAANNNNTTC	1 cut(s)	487
AspS9I	GGNCC	2 cut(s)	86, 364
AsuHPI	GGTGA	2 cut(s)	350, 470
AvaII	GGWCC	2 cut(s)	86, 364
BanII	GRGCYC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	2 cut(s)	47, 328
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BcoDI	GTCTC	2 cut(s)	35, 165
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme18I	GGWCC	2 cut(s)	86, 364
BmgT120I	GGNCC	2 cut(s)	86, 364
BmsI	GCATC	2 cut(s)	133, 331
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 335
Bse3DI	GCAATG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	10, 193
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	170, 335
BseMI	GCAATG	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	170, 335
BsmAI	GTCTC	2 cut(s)	35, 165
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	379
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	2 cut(s)	111, 367
BspHI	TCATGA	2 cut(s)	9, 177
BsrDI	GCAATG	1 cut(s)	504
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	82
Bst4CI	ACNGT	2 cut(s)	303, 375
BstDEI	CTNAG	1 cut(s)	229
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	2 cut(s)	10, 193
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	2 cut(s)	35, 165
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	518
BstV1I	GCAGC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	10, 193
CciI	TCATGA	2 cut(s)	9, 177
Cfr13I	GGNCC	2 cut(s)	86, 364
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	376
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviAII	CATG	4 cut(s)	10, 83, 178, 515
CviJI	RGCY	4 cut(s)	58, 136, 174, 211
CviKI_1	RGCY	4 cut(s)	58, 136, 174, 211
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	86, 364
EcoRI	GAATTC	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	4 cut(s)	13, 86, 181, 518
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FatI	CATG	4 cut(s)	9, 82, 177, 514
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	2 cut(s)	17, 180
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	345
HgaI	GACGC	1 cut(s)	336
Hin1II	CATG	4 cut(s)	13, 86, 181, 518
HinfI	GANTC	2 cut(s)	253, 488
HphI	GGTGA	2 cut(s)	350, 470
Hpy188I	TCNGA	3 cut(s)	198, 325, 384
Hpy188III	TCNNGA	3 cut(s)	10, 140, 178
HpyAV	CCTTC	7 cut(s)	101, 174, 278, 302, 355, 412, 473
HpyCH4III	ACNGT	2 cut(s)	303, 375
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	4 cut(s)	146, 344, 413, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	1 cut(s)	229
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	13, 86, 181, 518
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	133, 421
LpnPI	CCDG	3 cut(s)	153, 201, 495
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	2 cut(s)	133, 331
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	26, 494
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	2 cut(s)	458, 461
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	3 cut(s)	77, 123, 237
MlyI	GAGTC	1 cut(s)	262
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	487
MseI	TTAA	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	515
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	4 cut(s)	13, 86, 181, 518
NmuCI	GTSAC	2 cut(s)	26, 494
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	1 cut(s)	518
PagI	TCATGA	2 cut(s)	9, 177
PdmI	GAANNNNTTC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	86, 364
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	2 cut(s)	86, 364
SchI	GAGTC	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	4 cut(s)	138, 204, 213, 270
SfaNI	GCATC	2 cut(s)	133, 331
SinI	GGWCC	2 cut(s)	86, 364
Sse9I	AATT	3 cut(s)	77, 123, 237
SsiI	CCGC	2 cut(s)	111, 367
SspI	AATATT	1 cut(s)	469
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	303, 375
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	491
TasI	AATT	3 cut(s)	77, 123, 237
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseFI	GTSAC	2 cut(s)	26, 494
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	2 cut(s)	26, 494
TspDTI	ATGAA	7 cut(s)	26, 120, 166, 182, 194, 374, 492
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	86, 364
XapI	RAATTY	2 cut(s)	77, 123
XceI	RCATGY	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	487
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.