Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008995

Physical Location & Seq

Genomic Coordinates Reverse (-)

20297851 .. 20299952

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15820.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTCTCCAAGCAAGCGGAGAGAGATGGATGTCATGAAGTTGATGATGAGTGACTATAATGTGGAGACAATAAACGATGGGCTAAATGAATTCAATGTGGAATTCAATGGTCCAAAAGAAAGCCTTTATGAAGGCGGGGTTTGGAAAATCCGTGTTGAGCTTCCTGATGCTTATCCATATAAATCTCCATCTATTGGCTTCATGAACAAGATTTTCCACCCGAATGTTGATGAGCTATCTGGTTCTGTCTGCTTAGATGTAATTAACCAATCATGGAGTCCAATGTTTGACCTTTTAAACGTTTTTGAAGTTTTCCTTCCACAACTGTTGCTTTATCCAAATCCTTCAGATCCACTCAATGGTGATGCAGCATCATTGATGATGAAGGACCGAAAACTCTACGATCAGAAGGTCAAAGAGTACTGTGAGCGATATGCAAAGAAGGAGCACATTACCAATACAACACCAGACGAGGAGAGCGATGAGAACATTAGCGATGAGGAAAGCAATTCAAGCGACGATGATATTGCTGGACATGCAGACCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.9

Weight (kDa)

4.38

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46030 AT2G46030 AT2G46030 AT2G46030
fragaria_vesca	FvH4_5g05040
malus_domestica	MD00G1171400.v1.1 MD06G1177800.v1.1 MD06G1179100.v1.1 MD14G1184400.v1.1
prunus_persica	Prupe.5G177000_v2.0.a1
pyrus_communis	pycom06g15820 pycom14g15340
rosa_chinensis	RchiOBHm_Chr7g0194001
rosa_laevigata	RLG00000004224
rosa_multiflora	Rmu_sc0033848.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261630
rosa_rugosa	Rorug07G0013100
rosa_samantha	Rh7AG140300 Rh7BG140800 Rh7CG144300 Rh7DG141600
rosa_wichuraiana	Rw7G011970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	197, 362
AciI	CCGC	2 cut(s)	19, 138
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	92, 104
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	197, 362
AgsI	TTSAA	4 cut(s)	97, 109, 311, 516
AluBI	AGCT	2 cut(s)	163, 238
AluI	AGCT	2 cut(s)	163, 238
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	347
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	92, 104
AspS9I	GGNCC	2 cut(s)	113, 391
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	113, 391
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	3 cut(s)	22, 74, 199
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BcoDI	GTCTC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
BmcAI	AGTACT	1 cut(s)	425
Bme18I	GGWCC	2 cut(s)	113, 391
BmgT120I	GGNCC	2 cut(s)	113, 391
BmsI	GCATC	3 cut(s)	160, 358, 383
BsaBI	GATNNNNATC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 362
Bse8I	GATNNNNATC	1 cut(s)	174
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	197, 362
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	453
BslI	CCNNNNNNNGG	2 cut(s)	197, 362
BsmAI	GTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	2 cut(s)	352, 406
BspACI	CCGC	2 cut(s)	19, 138
BspHI	TCATGA	2 cut(s)	36, 204
BspPI	GGATC	1 cut(s)	347
BssMI	GATC	2 cut(s)	352, 406
Bst4CI	ACNGT	2 cut(s)	330, 428
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	355, 409
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	352, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	516, 539
BstNSI	RCATGY	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BtgZI	GCGATG	2 cut(s)	498, 513
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	17
CciI	TCATGA	2 cut(s)	36, 204
Cfr13I	GGNCC	2 cut(s)	113, 391
Csp6I	GTAC	1 cut(s)	424
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	4 cut(s)	37, 205, 276, 539
CviJI	RGCY	5 cut(s)	85, 126, 163, 201, 238
CviKI_1	RGCY	5 cut(s)	85, 126, 163, 201, 238
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	2 cut(s)	354, 408
DpnII	GATC	2 cut(s)	352, 406
DraI	TTTAAA	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	113, 391
Eco57I	CTGAAG	1 cut(s)	333
EcoRI	GAATTC	2 cut(s)	92, 104
FaeI	CATG	4 cut(s)	40, 208, 279, 542
FaiI	YATR	9 cut(s)	38, 60, 132, 181, 183, 206, 277, 438, 540
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 303, 335
FatI	CATG	4 cut(s)	36, 204, 275, 538
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	372
Hin1II	CATG	4 cut(s)	40, 208, 279, 542
HinfI	GANTC	1 cut(s)	280
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	352, 411
Hpy188III	TCNNGA	3 cut(s)	37, 167, 205
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	6 cut(s)	128, 329, 357, 382, 406, 439
HpyCH4III	ACNGT	2 cut(s)	330, 428
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	371, 440, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	516, 539
HpyF3I	CTNAG	1 cut(s)	256
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	40, 208, 279, 542
Kzo9I	GATC	2 cut(s)	352, 406
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	4 cut(s)	180, 228, 483, 519
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	3 cut(s)	160, 358, 383
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	354, 408
MboI	GATC	2 cut(s)	352, 406
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	4 cut(s)	92, 104, 264, 511
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	2 cut(s)	469, 496
MseI	TTAA	2 cut(s)	267, 299
MslI	CAYNNNNRTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	516, 539
NdeII	GATC	2 cut(s)	352, 406
NlaIII	CATG	4 cut(s)	40, 208, 279, 542
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	542
PagI	TCATGA	2 cut(s)	36, 204
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PflMI	CCANNNNNTGG	2 cut(s)	197, 362
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
Psp1406I	AACGTT	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	113, 391
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	267, 299
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	352, 406
Sau96I	GGNCC	2 cut(s)	113, 391
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	5 cut(s)	165, 240, 297, 306, 417
SfaNI	GCATC	3 cut(s)	160, 358, 383
SinI	GGWCC	2 cut(s)	113, 391
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	4 cut(s)	92, 104, 264, 511
SsiI	CCGC	2 cut(s)	19, 138
TaaI	ACNGT	2 cut(s)	330, 428
TaiI	ACGT	1 cut(s)	306
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	4 cut(s)	92, 104, 264, 511
TatI	WGTACW	1 cut(s)	423
Tru1I	TTAA	2 cut(s)	267, 299
Tru9I	TTAA	2 cut(s)	267, 299
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	6 cut(s)	53, 105, 147, 193, 221, 401
TspGWI	ACGGA	1 cut(s)	143
Van91I	CCANNNNNTGG	2 cut(s)	197, 362
VpaK11BI	GGWCC	2 cut(s)	113, 391
XapI	RAATTY	2 cut(s)	92, 104
XceI	RCATGY	1 cut(s)	542
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.