Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008995

Physical Location & Seq

Genomic Coordinates Forward (+)

39462797 .. 39464430

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1171400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAACAAGATTTTCCACCCGAATGTTGATGAGCTATCTGGTTCTGTCTGCTTAGATGTAATTAACCAATCATGGAGTCCAATGTTTGGTAATTATCATCCCATTTTAGTAAAAATTCTGACCCTTGTTTTCCAATACACTGTTGAAGTGTTGGTTTTGTGTCATTATACTCTCTTCCATGAGCCGGTGATGTTTCGCAACCTTTTAAACGTTTTTGAAGTTTTCCTTCCACAACTGTTGCTTTATCCAAATCCTTCAGATCCACTCAATGGTGATGCAGCATCATTGATGATGAAGGACCGAAAACTCTACAATCAGAAGGTCAAAGAGTACTGTGAGCGATATGCAAAGAAGGAGCACATTACCAATACAACACCAGACGAGGAGAGCGATGAGAACATTAGCGACGAGGAAAGCAATTCAAGCGACGATGATATTGCTGGACATGCAGACCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

153

Amino Acids

17.5

Weight (kDa)

4.64

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	2 - 43	2.2e-08	Ubiquitin-conjugating enzyme
UQ_con	PF00179	68 - 111	4e-06	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46030 AT2G46030 AT2G46030 AT2G46030
fragaria_vesca	FvH4_5g05040
malus_domestica	MD00G1171400.v1.1 MD06G1177800.v1.1 MD06G1179100.v1.1 MD14G1184400.v1.1
prunus_persica	Prupe.5G177000_v2.0.a1
pyrus_communis	pycom06g15820 pycom14g15340
rosa_chinensis	RchiOBHm_Chr7g0194001
rosa_laevigata	RLG00000004224
rosa_multiflora	Rmu_sc0033848.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261630
rosa_rugosa	Rorug07G0013100
rosa_samantha	Rh7AG140300 Rh7BG140800 Rh7CG144300 Rh7DG141600
rosa_wichuraiana	Rw7G011970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	86, 269
AclI	AACGTT	1 cut(s)	210
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	3 cut(s)	86, 184, 269
AgsI	TTSAA	3 cut(s)	146, 218, 423
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	199, 284
AvaII	GGWCC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmcAI	AGTACT	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmsI	GCATC	2 cut(s)	265, 290
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 184, 269
Bse118I	RCCGGY	1 cut(s)	184
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	3 cut(s)	86, 184, 269
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	3 cut(s)	86, 184, 269
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	184
BssMI	GATC	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	142, 237, 335
Bst6I	CTCTTC	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	423, 446
BstNSI	RCATGY	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	331
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	3 cut(s)	72, 179, 446
CviJI	RGCY	2 cut(s)	34, 184
CviKI_1	RGCY	2 cut(s)	34, 184
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
DraI	TTTAAA	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	240
FaeI	CATG	3 cut(s)	75, 182, 449
FaiI	YATR	6 cut(s)	73, 168, 180, 345, 447, 457
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	3 cut(s)	71, 178, 445
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	279
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	3 cut(s)	75, 182, 449
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	199, 284
Hpy188I	TCNGA	3 cut(s)	120, 259, 318
Hpy99I	CGWCG	2 cut(s)	410, 431
HpyAV	CCTTC	5 cut(s)	236, 264, 289, 313, 346
HpyCH4III	ACNGT	3 cut(s)	142, 237, 335
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	3 cut(s)	278, 347, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	423, 446
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	75, 182, 449
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	4 cut(s)	24, 198, 390, 426
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	2 cut(s)	265, 290
MaeII	ACGT	1 cut(s)	210
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	166
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	4 cut(s)	60, 91, 114, 418
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	2 cut(s)	376, 403
MseI	TTAA	2 cut(s)	63, 206
MslI	CAYNNNNRTG	1 cut(s)	21
MspI	CCGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	423, 446
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	3 cut(s)	75, 182, 449
NspI	RCATGY	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PflMI	CCANNNNNTGG	2 cut(s)	86, 269
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	63, 206
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	298
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	4 cut(s)	36, 204, 213, 324
SfaNI	GCATC	2 cut(s)	265, 290
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	4 cut(s)	60, 91, 114, 418
TaaI	ACNGT	3 cut(s)	142, 237, 335
TaiI	ACGT	1 cut(s)	213
TaqII	GACCGA	1 cut(s)	315
TasI	AATT	4 cut(s)	60, 91, 114, 418
TatI	WGTACW	1 cut(s)	330
Tru1I	TTAA	2 cut(s)	63, 206
Tru9I	TTAA	2 cut(s)	63, 206
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	2 cut(s)	17, 308
TspRI	CASTG	1 cut(s)	145
Van91I	CCANNNNNTGG	2 cut(s)	86, 269
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	1 cut(s)	114
XceI	RCATGY	1 cut(s)	449
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.