Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008995

Physical Location & Seq

Genomic Coordinates Reverse (-)

10450021 .. 10453915

Gene Structure 3895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG140800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCTTCTCCAAGCAAGAGGAGAGAGATGGATGTCATGAAGTTGATGATGAGTGACTATAATGTGGAGACAATAAATGATGGGCTCAATGAGTTCAATGTGGAATTCCATGGTCCAAAAGAAAGCATTTATGAAGGCGGAGTATGGAAAATTCGTGTGGAGCTTCCAGATGCATATCCATACAAGTCTCCTTCTATTGGCTTCATGAACAAGATTTTTCATCCGAACGTTGATGAGCTATCTGGTTCTGTCTGCTTAGATGTAATTAATCAATCATGGAGTCCAATGTTTGACCTTTTAAATGTTTTTGAAGTTTTCCTTCCACAACTGTTGCTCTATCCAAATCCATCAGACCCACTCAATGGTGATGCAGCGTCATTGATGATGAAGGACCGCAAACTGTACGATCAGAAAGTGAAAGAGTATTGTGAAAAATATGCAAAGAAGGAGCATATTACTAATACAACACCAGAAGAAGAAAGTGGTGATGAGAATATTAGTGATGAAGGAAGCGATTCGAGTGACGATGACATTGCTGGACATGCAGACCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.9

Weight (kDa)

4.43

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	10 - 142	1.5e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46030 AT2G46030 AT2G46030 AT2G46030
fragaria_vesca	FvH4_5g05040
malus_domestica	MD00G1171400.v1.1 MD06G1177800.v1.1 MD06G1179100.v1.1 MD14G1184400.v1.1
prunus_persica	Prupe.5G177000_v2.0.a1
pyrus_communis	pycom06g15820 pycom14g15340
rosa_chinensis	RchiOBHm_Chr7g0194001
rosa_laevigata	RLG00000004224
rosa_multiflora	Rmu_sc0033848.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261630
rosa_rugosa	Rorug07G0013100
rosa_samantha	Rh7AG140300 Rh7BG140800 Rh7CG144300 Rh7DG141600
rosa_wichuraiana	Rw7G011970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	362
AciI	CCGC	2 cut(s)	138, 394
AclI	AACGTT	1 cut(s)	228
AcsI	RAATTY	2 cut(s)	104, 150
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	2 cut(s)	197, 362
AgsI	TTSAA	2 cut(s)	97, 311
AluBI	AGCT	2 cut(s)	163, 238
AluI	AGCT	2 cut(s)	163, 238
Alw26I	GTCTC	2 cut(s)	62, 192
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	104, 150
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	514
AspS9I	GGNCC	2 cut(s)	113, 391
AsuHPI	GGTGA	2 cut(s)	377, 497
AvaII	GGWCC	2 cut(s)	113, 391
BanII	GRGCYC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	3 cut(s)	22, 74, 355
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BcoDI	GTCTC	2 cut(s)	62, 192
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme18I	GGWCC	2 cut(s)	113, 391
BmgT120I	GGNCC	2 cut(s)	113, 391
BmsI	GCATC	2 cut(s)	160, 358
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 362
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	37, 220
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	197, 362
BseMI	GCAATG	1 cut(s)	531
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	197, 362
BsmAI	GTCTC	2 cut(s)	62, 192
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	406
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	2 cut(s)	138, 394
BspHI	TCATGA	2 cut(s)	36, 204
BsrDI	GCAATG	1 cut(s)	531
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	330, 402
BstDEI	CTNAG	1 cut(s)	256
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	37, 220
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	2 cut(s)	62, 192
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	545
BstV1I	GCAGC	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	37, 220
CciI	TCATGA	2 cut(s)	36, 204
Cfr13I	GGNCC	2 cut(s)	113, 391
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	403
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	5 cut(s)	37, 110, 205, 276, 542
CviJI	RGCY	4 cut(s)	85, 163, 201, 238
CviKI_1	RGCY	4 cut(s)	85, 163, 201, 238
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
DraI	TTTAAA	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	113, 391
EcoRI	GAATTC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	5 cut(s)	40, 113, 208, 279, 545
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	5 cut(s)	36, 109, 204, 275, 541
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	2 cut(s)	44, 207
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	372
HgaI	GACGC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	40, 113, 208, 279, 545
HinfI	GANTC	2 cut(s)	280, 515
HphI	GGTGA	2 cut(s)	377, 497
Hpy188I	TCNGA	3 cut(s)	225, 352, 411
Hpy188III	TCNNGA	3 cut(s)	37, 167, 205
HpyAV	CCTTC	6 cut(s)	128, 201, 329, 382, 439, 500
HpyCH4III	ACNGT	2 cut(s)	330, 402
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	173, 371, 440, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	1 cut(s)	256
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	5 cut(s)	40, 113, 208, 279, 545
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	2 cut(s)	160, 448
LpnPI	CCDG	4 cut(s)	180, 228, 483, 522
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	2 cut(s)	160, 358
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	53, 521
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	2 cut(s)	485, 488
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	104, 150, 264
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	1 cut(s)	12
Mph1103I	ATGCAT	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	514
MseI	TTAA	2 cut(s)	267, 299
MwoI	GCNNNNNNNGC	1 cut(s)	542
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	5 cut(s)	40, 113, 208, 279, 545
NmuCI	GTSAC	2 cut(s)	53, 521
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	1 cut(s)	545
PagI	TCATGA	2 cut(s)	36, 204
PdmI	GAANNNNTTC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	515
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PshBI	ATTAAT	1 cut(s)	267
Psp1406I	AACGTT	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	113, 391
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	267, 299
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	2 cut(s)	113, 391
SchI	GAGTC	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	4 cut(s)	165, 231, 240, 297
SfaNI	GCATC	2 cut(s)	160, 358
SinI	GGWCC	2 cut(s)	113, 391
Sse9I	AATT	3 cut(s)	104, 150, 264
SsiI	CCGC	2 cut(s)	138, 394
SspI	AATATT	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	330, 402
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	518
TasI	AATT	3 cut(s)	104, 150, 264
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	2 cut(s)	267, 299
Tru9I	TTAA	2 cut(s)	267, 299
TseFI	GTSAC	2 cut(s)	53, 521
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	53, 521
TspDTI	ATGAA	7 cut(s)	53, 147, 193, 209, 221, 401, 519
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	113, 391
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	2 cut(s)	104, 150
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	514
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.