Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033848.1

Orthogroup ID

OG0008995

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1507

Gene Structure 1507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033848.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 425 bp

gttaggaaatttgatattgttaaattcaaaatgtcttctccaagcaagaggagagagatggatgtcatgaagttgatgatgagtgactataatgtggagacaataaatgatgggctcaacgagttcaatgtggaattccatggtccaaaagaaagcatttatgaaggcggagtatggaaaattcgtgtggagcttccagatgcatatccatacaagtctccttctattggcttcatgaacaagatttttcatccgaacgttgatgagctatctggttctgtctgcttagatgtaattaatcaatcatggagtccaatgtttgaccttttaaatgtttttgaagttttccttccacaactgttgctctatccaaatccatcagacccactcaatggtgatgcagcgtcattgatgatgaaggaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

142

Amino Acids

16.34

Weight (kDa)

4.99

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46030 AT2G46030 AT2G46030 AT2G46030
fragaria_vesca	FvH4_5g05040
malus_domestica	MD00G1171400.v1.1 MD06G1177800.v1.1 MD06G1179100.v1.1 MD14G1184400.v1.1
prunus_persica	Prupe.5G177000_v2.0.a1
pyrus_communis	pycom06g15820 pycom14g15340
rosa_chinensis	RchiOBHm_Chr7g0194001
rosa_laevigata	RLG00000004224
rosa_multiflora	Rmu_sc0033848.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261630
rosa_rugosa	Rorug07G0013100
rosa_samantha	Rh7AG140300 Rh7BG140800 Rh7CG144300 Rh7DG141600
rosa_wichuraiana	Rw7G011970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AciI	CCGC	1 cut(s)	168
AclI	AACGTT	1 cut(s)	258
AcsI	RAATTY	4 cut(s)	8, 23, 134, 180
AfiI	CCNNNNNNNGG	2 cut(s)	227, 392
AgsI	TTSAA	3 cut(s)	28, 127, 341
AluBI	AGCT	2 cut(s)	193, 268
AluI	AGCT	2 cut(s)	193, 268
Alw26I	GTCTC	2 cut(s)	92, 222
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	4 cut(s)	8, 23, 134, 180
AseI	ATTAAT	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	143, 421
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	2 cut(s)	143, 421
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	3 cut(s)	52, 104, 385
BcoDI	GTCTC	2 cut(s)	92, 222
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme18I	GGWCC	2 cut(s)	143, 421
BmgT120I	GGNCC	2 cut(s)	143, 421
BmsI	GCATC	2 cut(s)	190, 388
BpiI	GAAGAC	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 392
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	2 cut(s)	67, 250
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	227, 392
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	227, 392
BsmAI	GTCTC	2 cut(s)	92, 222
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	1 cut(s)	168
BspHI	TCATGA	2 cut(s)	66, 234
BssECI	CCNNGG	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	286
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	67, 250
BstMAI	GTCTC	2 cut(s)	92, 222
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	67, 250
CciI	TCATGA	2 cut(s)	66, 234
Cfr13I	GGNCC	2 cut(s)	143, 421
CseI	GACGC	1 cut(s)	393
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	4 cut(s)	67, 140, 235, 306
CviJI	RGCY	4 cut(s)	115, 193, 231, 268
CviKI_1	RGCY	4 cut(s)	115, 193, 231, 268
DdeI	CTNAG	1 cut(s)	286
DraI	TTTAAA	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	143, 421
EcoRI	GAATTC	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	4 cut(s)	70, 143, 238, 309
FaiI	YATR	9 cut(s)	68, 90, 141, 162, 175, 205, 211, 236, 307
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	4 cut(s)	66, 139, 234, 305
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	2 cut(s)	74, 237
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	402
HgaI	GACGC	1 cut(s)	393
Hin1II	CATG	4 cut(s)	70, 143, 238, 309
HinfI	GANTC	1 cut(s)	310
HphI	GGTGA	1 cut(s)	407
Hpy188I	TCNGA	2 cut(s)	255, 382
Hpy188III	TCNNGA	3 cut(s)	67, 197, 235
HpyAV	CCTTC	4 cut(s)	158, 231, 359, 412
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	2 cut(s)	203, 401
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	70, 143, 238, 309
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	2 cut(s)	210, 258
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	2 cut(s)	190, 388
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	83
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	5 cut(s)	8, 23, 134, 180, 294
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	1 cut(s)	42
Mph1103I	ATGCAT	1 cut(s)	205
MseI	TTAA	3 cut(s)	21, 297, 329
NcoI	CCATGG	1 cut(s)	139
NlaIII	CATG	4 cut(s)	70, 143, 238, 309
NmuCI	GTSAC	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	205
PagI	TCATGA	2 cut(s)	66, 234
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PshBI	ATTAAT	1 cut(s)	297
Psp1406I	AACGTT	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	143, 421
SaqAI	TTAA	3 cut(s)	21, 297, 329
SatI	GCNGC	1 cut(s)	402
Sau96I	GGNCC	2 cut(s)	143, 421
SchI	GAGTC	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	4 cut(s)	195, 261, 270, 327
SfaNI	GCATC	2 cut(s)	190, 388
SinI	GGWCC	2 cut(s)	143, 421
Sse9I	AATT	5 cut(s)	8, 23, 134, 180, 294
SsiI	CCGC	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	360
TaiI	ACGT	1 cut(s)	261
TasI	AATT	5 cut(s)	8, 23, 134, 180, 294
Tru1I	TTAA	3 cut(s)	21, 297, 329
Tru9I	TTAA	3 cut(s)	21, 297, 329
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	5 cut(s)	83, 177, 223, 239, 251
Van91I	CCANNNNNTGG	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	143, 421
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	4 cut(s)	8, 23, 134, 180
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.