Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008995

Physical Location & Seq

Genomic Coordinates Reverse (-)

11326408 .. 11330406

Gene Structure 3999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG140300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACTATTGTGGTTTCAGGCATTTATGAAGGCGGAGTATGGAAAATTCGTGTGGAGCTTCCAGATGCATATCCATACAAGTCTCCTTCTATTGGCTTCATGAACAAGATTTTTCATCCGAACGTTGATGAGCTATCTGGTTCTGTCTGCTTAGATGTAATTAATCAATCATGGAGTCCAATGTTTGACCTTTTAAATGTTTTTGAAGTTTTCCTCCCACAACTGTTGCTCTATCCAAATCCATCAGACCCACTCAATGGTGATGCAGCGTCATTGATGATGAAGGACCGCAAACTGTACGATCAGAAAGTGAAAGAGTATTGTGAAAAATATGCAAAGAAGGAGCATATTACTAATACAACACCAGAAGAAGAAAGTGGTGATGAGAATATTAGTGATGAAGGAAGCGTCTCGAGTGACGATGACATTGCTGGACATGCAGACCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

149

Amino Acids

16.69

Weight (kDa)

4.38

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	6 - 107	2.1e-34	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46030 AT2G46030 AT2G46030 AT2G46030
fragaria_vesca	FvH4_5g05040
malus_domestica	MD00G1171400.v1.1 MD06G1177800.v1.1 MD06G1179100.v1.1 MD14G1184400.v1.1
prunus_persica	Prupe.5G177000_v2.0.a1
pyrus_communis	pycom06g15820 pycom14g15340
rosa_chinensis	RchiOBHm_Chr7g0194001
rosa_laevigata	RLG00000004224
rosa_multiflora	Rmu_sc0033848.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261630
rosa_rugosa	Rorug07G0013100
rosa_samantha	Rh7AG140300 Rh7BG140800 Rh7CG144300 Rh7DG141600
rosa_wichuraiana	Rw7G011970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	2 cut(s)	33, 289
AclI	AACGTT	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	45
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	92, 257
AgsI	TTSAA	1 cut(s)	206
AluBI	AGCT	2 cut(s)	58, 133
AluI	AGCT	2 cut(s)	58, 133
Alw26I	GTCTC	2 cut(s)	87, 415
Ama87I	CYCGRG	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	45
AseI	ATTAAT	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	272, 392
AvaI	CYCGRG	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BcoDI	GTCTC	2 cut(s)	87, 415
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	286
BmsI	GCATC	2 cut(s)	55, 253
BsaBI	GATNNNNATC	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 257
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	69
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	92, 257
BseMI	GCAATG	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	412
BslI	CCNNNNNNNGG	2 cut(s)	92, 257
BsmAI	GTCTC	2 cut(s)	87, 415
BsmBI	CGTCTC	1 cut(s)	415
BsoBI	CYCGRG	1 cut(s)	412
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	2 cut(s)	33, 289
BspHI	TCATGA	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	426
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	2 cut(s)	225, 297
BstDEI	CTNAG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	87, 415
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	440
BstV1I	GCAGC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	2 cut(s)	258, 397
Csp6I	GTAC	1 cut(s)	298
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	3 cut(s)	100, 171, 437
CviJI	RGCY	3 cut(s)	58, 96, 133
CviKI_1	RGCY	3 cut(s)	58, 96, 133
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
DraI	TTTAAA	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	3 cut(s)	103, 174, 440
FaiI	YATR	9 cut(s)	27, 40, 70, 76, 101, 172, 333, 348, 438
FatI	CATG	3 cut(s)	99, 170, 436
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
HgaI	GACGC	2 cut(s)	258, 397
Hin1II	CATG	3 cut(s)	103, 174, 440
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	2 cut(s)	272, 392
Hpy188I	TCNGA	3 cut(s)	120, 247, 306
Hpy188III	TCNNGA	3 cut(s)	62, 100, 412
HpyAV	CCTTC	5 cut(s)	23, 96, 277, 334, 395
HpyCH4III	ACNGT	2 cut(s)	225, 297
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	68, 266, 335, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	103, 174, 440
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	55, 343
LpnPI	CCDG	5 cut(s)	3, 75, 123, 378, 417
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	2 cut(s)	55, 253
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	2 cut(s)	380, 383
MluCI	AATT	2 cut(s)	45, 159
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	1 cut(s)	224
Mph1103I	ATGCAT	1 cut(s)	70
MseI	TTAA	2 cut(s)	162, 194
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	103, 174, 440
NmuCI	GTSAC	1 cut(s)	416
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	440
PaeR7I	CTCGAG	1 cut(s)	412
PagI	TCATGA	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	286
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	2 cut(s)	162, 194
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	184
SetI	ASST	4 cut(s)	60, 126, 135, 192
SfaNI	GCATC	2 cut(s)	55, 253
Sfr274I	CTCGAG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	2 cut(s)	45, 159
SsiI	CCGC	2 cut(s)	33, 289
SspI	AATATT	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	225, 297
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	413
TasI	AATT	2 cut(s)	45, 159
Tru1I	TTAA	2 cut(s)	162, 194
Tru9I	TTAA	2 cut(s)	162, 194
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	6 cut(s)	42, 88, 104, 116, 296, 414
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	286
VspI	ATTAAT	1 cut(s)	162
XapI	RAATTY	1 cut(s)	45
XceI	RCATGY	1 cut(s)	440
XhoI	CTCGAG	1 cut(s)	412
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.