Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014909

Physical Location & Seq

Genomic Coordinates Forward (+)

3010215 .. 3012090

Gene Structure 1876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGCACCCCGGCATGATCAGAACCATCGTCGGCATTATCGGTAATATCATCTCGTTGGGTTTGTTTCTCTCTCCAATTCCAACGTTTATGAAAATTATCAAGCAAAAATCAGTGGCAGATTTCAAGCCAGATCCATATGTAGCAACTCTGCTCAATTGTGCCGTCTGGGTTTTCTATGGAATGCCATTTGTTCATCCTGATAGCACTCTTGTCTGGACAATCAATGGGGCTGGTTTCATTATCGAAACCGTCTATACTACTATCTTCATTTTATACTCCCCTGGATCAAAACGTAAAAGGATCTTCATCATTCTTGCGATTGAAGCTTCATTCTTTGCTGTTGTGGTTTTAGTTAACATGCTCGCTTTTCATACCACGAAAACCAGAACTCTGGTAGTTGGGATCATCTGTATCGTCTTCAACATCCTTATGTATGCTTCACCTCTGACGGTCATGAAAATGGTGATCAAGACAAAGAGTGTCAAATACATGCCCTTTTATCTTTCATTAGCTAACTTCTTGAATGGAATTGTTTGGCTTATTTACTCGCTTCTCAAATTTGATATCAATATTCTGATTCCCAATGGATTGGGAGCTCTATCTGGTTTGGTGCAACTCATTCTGTATGCTACATTCTACAAGACCACCAGATGGGAGGACGACGACGACGACATCAAGTCAAGATCAGAAGTGCAGCTCTCGAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

238

Amino Acids

26.63

Weight (kDa)

9.37

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 95	3.2e-22	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 216	8.2e-25	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28007
fragaria_vesca	FvH4_5g05160
malus_domestica	MD06G1176800.v1.1 MD14G1183000.v1.1
prunus_persica	Prupe.5G175500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193801
rosa_laevigata	RLG00000004244
rosa_roxburghii	Rroxscaffold_3G00261820
rosa_rugosa	Rorug07G0012000 Rorug07G0012100
rosa_samantha	Rh7AG138700 Rh7BG139000 Rh7CG142600 Rh7CG142700 Rh7DG140200
rosa_wichuraiana	Rw7G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	654
AclI	AACGTT	1 cut(s)	86
AclWI	GGATC	4 cut(s)	128, 295, 311, 413
AcsI	RAATTY	1 cut(s)	560
AfiI	CCNNNNNNNGG	1 cut(s)	654
AgsI	TTSAA	4 cut(s)	127, 326, 424, 526
AhdI	GACNNNNNGTC	1 cut(s)	679
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	329, 515, 599, 700
AluI	AGCT	4 cut(s)	329, 515, 599, 700
Alw21I	GWGCWC	1 cut(s)	601
AlwI	GGATC	4 cut(s)	128, 295, 311, 413
ApeKI	GCWGC	1 cut(s)	697
ApoI	RAATTY	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	2 cut(s)	435, 478
BanII	GRGCYC	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	2 cut(s)	35, 648
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	2 cut(s)	18, 468
BcnI	CCSGG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	698
BlsI	GCNGC	1 cut(s)	699
Bme1390I	CCNGG	2 cut(s)	12, 285
BmeRI	GACNNNNNGTC	1 cut(s)	679
BmrFI	CCNGG	2 cut(s)	12, 285
BpiI	GAAGAC	1 cut(s)	412
BpuMI	CCSGG	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	10, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse8I	GATNNNNATC	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	10, 283
BseGI	GGATG	2 cut(s)	196, 426
BseJI	GATNNNNATC	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseXI	GCAGC	1 cut(s)	709
BsiHKAI	GWGCWC	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmI	GAATGC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	7 cut(s)	18, 133, 287, 303, 405, 468, 686
BspHI	TCATGA	1 cut(s)	456
BspPI	GGATC	4 cut(s)	128, 295, 311, 413
BssECI	CCNNGG	2 cut(s)	10, 283
BssMI	GATC	7 cut(s)	18, 133, 287, 303, 405, 468, 686
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	253, 454
BstC8I	GCNNGC	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	196, 426
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	7 cut(s)	21, 136, 290, 306, 408, 471, 689
BstMBI	GATC	7 cut(s)	18, 133, 287, 303, 405, 468, 686
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	2 cut(s)	364, 496
BstSCI	CCNGG	2 cut(s)	10, 283
BstV1I	GCAGC	1 cut(s)	709
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	2 cut(s)	133, 303
BstXI	CCANNNNNNTGG	2 cut(s)	394, 592
BstYI	RGATCY	2 cut(s)	133, 303
BtsCI	GGATG	2 cut(s)	196, 426
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	4 cut(s)	16, 361, 457, 493
CviJI	RGCY	7 cut(s)	130, 233, 329, 515, 541, 599, 700
CviKI_1	RGCY	7 cut(s)	130, 233, 329, 515, 541, 599, 700
DpnI	GATC	7 cut(s)	20, 135, 289, 305, 407, 470, 688
DpnII	GATC	7 cut(s)	18, 133, 287, 303, 405, 468, 686
DriI	GACNNNNNGTC	1 cut(s)	679
Eam1105I	GACNNNNNGTC	1 cut(s)	679
Ecl136II	GAGCTC	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	601
Eco32I	GATATC	1 cut(s)	568
Eco53kI	GAGCTC	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	601
FaeI	CATG	4 cut(s)	19, 364, 460, 496
FatI	CATG	4 cut(s)	15, 360, 456, 492
FauNDI	CATATG	1 cut(s)	139
FbaI	TGATCA	2 cut(s)	18, 468
Fnu4HI	GCNGC	1 cut(s)	698
FokI	GGATG	2 cut(s)	183, 413
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	1 cut(s)	698
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	698
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	19, 364, 460, 496
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	1 cut(s)	580
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	2 cut(s)	435, 478
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	4 cut(s)	23, 450, 579, 691
Hpy188III	TCNNGA	7 cut(s)	200, 217, 457, 472, 523, 684, 703
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	4 cut(s)	35, 668, 671, 674
HpyCH4III	ACNGT	2 cut(s)	253, 454
HpyCH4IV	ACGT	2 cut(s)	86, 295
HpyCH4V	TGCA	2 cut(s)	616, 697
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpySE526I	ACGT	2 cut(s)	86, 295
Hsp92II	CATG	4 cut(s)	19, 364, 460, 496
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	2 cut(s)	18, 468
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	7 cut(s)	18, 133, 287, 303, 405, 468, 686
LmnI	GCTCC	1 cut(s)	596
Lsp1109I	GCAGC	1 cut(s)	709
MaeII	ACGT	2 cut(s)	86, 295
MalI	GATC	7 cut(s)	20, 135, 289, 305, 407, 470, 688
MboI	GATC	7 cut(s)	18, 133, 287, 303, 405, 468, 686
MboII	GAAGA	3 cut(s)	259, 298, 412
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	2 cut(s)	133, 303
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	5 cut(s)	78, 96, 157, 531, 560
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	2 cut(s)	456, 652
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	2 cut(s)	431, 461
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	12, 285
MunI	CAATTG	1 cut(s)	157
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	326
NciI	CCSGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	7 cut(s)	18, 133, 287, 303, 405, 468, 686
NlaIII	CATG	4 cut(s)	19, 364, 460, 496
NspI	RCATGY	2 cut(s)	364, 496
PagI	TCATGA	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	669
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	580
PflMI	CCANNNNNTGG	1 cut(s)	654
PkrI	GCNGC	1 cut(s)	699
Psp124BI	GAGCTC	1 cut(s)	601
Psp1406I	AACGTT	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	133, 303
RseI	CAYNNNNRTG	2 cut(s)	431, 461
SacI	GAGCTC	1 cut(s)	601
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	1 cut(s)	698
Sau3AI	GATC	7 cut(s)	18, 133, 287, 303, 405, 468, 686
ScrFI	CCNGG	2 cut(s)	12, 285
SduI	GDGCHC	1 cut(s)	601
SetI	ASST	7 cut(s)	89, 298, 331, 448, 517, 601, 702
SmiMI	CAYNNNNRTG	2 cut(s)	431, 461
Sse9I	AATT	5 cut(s)	78, 96, 157, 531, 560
SspI	AATATT	1 cut(s)	574
SstI	GAGCTC	1 cut(s)	601
StyD4I	CCNGG	2 cut(s)	10, 283
TaaI	ACNGT	2 cut(s)	253, 454
TaiI	ACGT	2 cut(s)	89, 298
TaqI	TCGA	2 cut(s)	246, 704
TasI	AATT	5 cut(s)	78, 96, 157, 531, 560
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	1 cut(s)	697
TspDTI	ATGAA	9 cut(s)	107, 185, 229, 259, 298, 321, 362, 473, 498
TspRI	CASTG	1 cut(s)	120
Van91I	CCANNNNNTGG	1 cut(s)	654
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	2 cut(s)	364, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.