Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0014909

Physical Location & Seq

Genomic Coordinates Reverse (-)

11140854 .. 11143418

Gene Structure 2565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG138700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAAAATATTGCATGCATGCAGTCCAACTTTTGTGAAGATTGTCAACCAAAAATCAGTTGCAGATTTCAAGCCAGATCCTTATCTAGCAACTCTGCTCAATTGTGCCGTCTGGGTTTTTTATGGAATGCCATTTGTTCATCCTGATAGCACCCTTGTCTGGACAATCAATGGTGCTGGTTTCATTATCGAATCCGCCTATATTGTCATCTTCATATTATACTCCCCTGGATCAAAACGTAGAAGGATCTTCATCGTTCTTGTGGTTGAAGCTGCCTTCTTTGCTGTTGTGGTTTTAGTCAACATGCTCGCTTTTCATACCACAAAAACCCGAACTCTGGTAGTTGGAATCATCTGTATCGTCTTCAATATCCTTATGTATGCTTCACCATTGACGGTCATGAAAATGGTGATCAAGACAAAGAGTGTCAAATACATGCCATTTTATCTTTCATTAGCCAACTTCTGTAATGGAATTGTTTGGCTTATTTACGCGCTTCTCAAATTTGATATCAATATTCTGCTTCCCAATGGGTTGGGAGCTCTATCTGGCTTGGTGCAACTCATTCTATACGCTACATTCTACAAGACCACCCGATGGGAAGATGACGACGACGATCAGAAGTCACGATCAGAAGTCCAGCTCTCGAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

218

Amino Acids

24.62

Weight (kDa)

9.13

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	9 - 76	3.8e-13	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	114 - 197	2.3e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28007
fragaria_vesca	FvH4_5g05160
malus_domestica	MD06G1176800.v1.1 MD14G1183000.v1.1
prunus_persica	Prupe.5G175500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193801
rosa_laevigata	RLG00000004244
rosa_roxburghii	Rroxscaffold_3G00261820
rosa_rugosa	Rorug07G0012000 Rorug07G0012100
rosa_samantha	Rh7AG138700 Rh7BG139000 Rh7CG142600 Rh7CG142700 Rh7DG140200
rosa_wichuraiana	Rw7G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	597
AccII	CGCG	1 cut(s)	494
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	3 cut(s)	71, 238, 254
AcsI	RAATTY	1 cut(s)	503
AfiI	CCNNNNNNNGG	3 cut(s)	159, 337, 597
AgsI	TTSAA	3 cut(s)	70, 269, 367
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	3 cut(s)	272, 542, 643
AluI	AGCT	3 cut(s)	272, 542, 643
Alw21I	GWGCWC	1 cut(s)	544
AlwI	GGATC	3 cut(s)	71, 238, 254
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	496
AsuHPI	GGTGA	2 cut(s)	378, 421
BanII	GRGCYC	1 cut(s)	544
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	1 cut(s)	591
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	411
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	355
BsaBI	GATNNNNATC	2 cut(s)	81, 251
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 337, 597
Bse8I	GATNNNNATC	2 cut(s)	81, 251
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	2 cut(s)	81, 251
BseLI	CCNNNNNNNGG	3 cut(s)	159, 337, 597
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	544
BslI	CCNNNNNNNGG	3 cut(s)	159, 337, 597
BsmI	GAATGC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	6 cut(s)	76, 230, 246, 411, 616, 629
BspACI	CCGC	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	399
BspPI	GGATC	3 cut(s)	71, 238, 254
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	6 cut(s)	76, 230, 246, 411, 616, 629
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	397
BstC8I	GCNNGC	3 cut(s)	15, 19, 309
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	6 cut(s)	79, 233, 249, 414, 619, 632
BstMBI	GATC	6 cut(s)	76, 230, 246, 411, 616, 629
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	4 cut(s)	17, 21, 307, 439
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	76, 246
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	2 cut(s)	76, 246
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	3 cut(s)	15, 19, 309
CciI	TCATGA	1 cut(s)	399
CfoI	GCGC	1 cut(s)	496
CviAII	CATG	5 cut(s)	14, 18, 304, 400, 436
CviJI	RGCY	7 cut(s)	73, 272, 458, 484, 542, 552, 643
CviKI_1	RGCY	7 cut(s)	73, 272, 458, 484, 542, 552, 643
DpnI	GATC	6 cut(s)	78, 232, 248, 413, 618, 631
DpnII	GATC	6 cut(s)	76, 230, 246, 411, 616, 629
EciI	GGCGGA	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	544
Eco32I	GATATC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	542
EcoICRI	GAGCTC	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	226
EcoRV	GATATC	1 cut(s)	511
EcoT22I	ATGCAT	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	544
FaeI	CATG	5 cut(s)	17, 21, 307, 403, 439
FatI	CATG	5 cut(s)	13, 17, 303, 399, 435
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	126
FriOI	GRGCYC	1 cut(s)	544
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	5 cut(s)	17, 21, 307, 403, 439
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	2 cut(s)	46, 301
HindII	GTYRAC	2 cut(s)	46, 301
HinfI	GANTC	2 cut(s)	191, 348
HphI	GGTGA	2 cut(s)	378, 421
Hpy166II	GTNNAC	2 cut(s)	46, 301
Hpy188I	TCNGA	2 cut(s)	621, 634
Hpy188III	TCNNGA	6 cut(s)	143, 160, 400, 415, 627, 646
Hpy8I	GTNNAC	2 cut(s)	46, 301
Hpy99I	CGWCG	2 cut(s)	614, 617
HpyAV	CCTTC	2 cut(s)	237, 286
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	5 cut(s)	13, 17, 21, 62, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	5 cut(s)	17, 21, 307, 403, 439
HspAI	GCGC	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	6 cut(s)	76, 230, 246, 411, 616, 629
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	624
MalI	GATC	6 cut(s)	78, 232, 248, 413, 618, 631
MboI	GATC	6 cut(s)	76, 230, 246, 411, 616, 629
MboII	GAAGA	5 cut(s)	49, 202, 241, 355, 614
MfeI	CAATTG	1 cut(s)	100
MflI	RGATCY	2 cut(s)	76, 246
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	3 cut(s)	100, 474, 503
MmeI	TCCRAC	2 cut(s)	50, 325
Mph1103I	ATGCAT	1 cut(s)	19
MslI	CAYNNNNRTG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	228
MunI	CAATTG	1 cut(s)	100
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	6 cut(s)	76, 230, 246, 411, 616, 629
NlaIII	CATG	5 cut(s)	17, 21, 307, 403, 439
NmuCI	GTSAC	1 cut(s)	624
NsiI	ATGCAT	1 cut(s)	19
NspI	RCATGY	4 cut(s)	17, 21, 307, 439
PaeI	GCATGC	2 cut(s)	17, 21
PagI	TCATGA	1 cut(s)	399
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	191, 348
PflMI	CCANNNNNTGG	1 cut(s)	597
PkrI	GCNGC	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PsuI	RGATCY	2 cut(s)	76, 246
RseI	CAYNNNNRTG	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	544
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	6 cut(s)	76, 230, 246, 411, 616, 629
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	544
SetI	ASST	4 cut(s)	241, 274, 544, 645
SmiMI	CAYNNNNRTG	1 cut(s)	404
SphI	GCATGC	2 cut(s)	17, 21
Sse9I	AATT	3 cut(s)	100, 474, 503
SsiI	CCGC	1 cut(s)	195
SspI	AATATT	2 cut(s)	9, 517
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	544
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	189, 647
TasI	AATT	3 cut(s)	100, 474, 503
TfiI	GAWTC	2 cut(s)	191, 348
TseFI	GTSAC	1 cut(s)	624
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	624
TspDTI	ATGAA	8 cut(s)	17, 128, 172, 202, 241, 305, 416, 441
Van91I	CCANNNNNTGG	1 cut(s)	597
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	4 cut(s)	17, 21, 307, 439
XspI	CTAG	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.