Rh7BG139000

sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014909
Physical Location & Seq
Reverse (-)
10357561 .. 10359472
1912 bp
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UTR
Exon/CDS
Intron
Rh7BG139000.1

Sequence Viewer

Length: 435 bp
ATGAAAATATTGCATGCATGCAGTCCAACTTTTGTGAAGATTGTCAAGCAAAAATCAGTTGCAGATTTCAAGCCAGATCCTTATCTAGCAACTCTGCTCAATTGTGCCGTCTGGGTTTTTTATGGAATGCCATTTGTTCATCCTGATAGCACCCTTGTCTGGACAATCAATGGTGCTGGTTTCATTATCGAATCCGCCTATATTGTCATCTTCATATTATACTCCCCTGGATCAAAACGTAGAAGGATCTTCATCGTTCTTGTGGTTGAAGCTGCCTTCTTTGCTGTTGTGGTTTTAGTCAACATGCTCGCTTTTCATACCACAAAAACCCGAACTCTGGTAGTTGGAATCATCTGTATCGTCTTCAATATCCTTATGTATGCTTCACCATTGACGGTCATGGTATGTACAAACTTTCCTATTGTGCTAAATTAA

Protein Analysis

144

Amino Acids

16.11

Weight (kDa)

9.36

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 9 - 76 3.4e-14 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28007
fragaria_vesca FvH4_5g05160
malus_domestica MD06G1176800.v1.1 MD14G1183000.v1.1
prunus_persica Prupe.5G175500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0193801
rosa_laevigata RLG00000004244
rosa_roxburghii Rroxscaffold_3G00261820
rosa_rugosa Rorug07G0012000 Rorug07G0012100
rosa_samantha Rh7AG138700 Rh7BG139000 Rh7CG142600 Rh7CG142700 Rh7DG140200
rosa_wichuraiana Rw7G011820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 195
AclWI GGATC 3 cut(s) 71, 238, 254
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 2 cut(s) 159, 337
AgsI TTSAA 3 cut(s) 70, 269, 367
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 3 cut(s) 71, 238, 254
ApeKI GCWGC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 228
BfaI CTAG 1 cut(s) 86
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 355
BsaBI GATNNNNATC 2 cut(s) 81, 251
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 337
Bse8I GATNNNNATC 2 cut(s) 81, 251
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 139
BseJI GATNNNNATC 2 cut(s) 81, 251
BseLI CCNNNNNNNGG 2 cut(s) 159, 337
BseXI GCAGC 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 159, 337
BsmI GAATGC 1 cut(s) 132
Bsp1407I TGTACA 1 cut(s) 407
Bsp143I GATC 3 cut(s) 76, 230, 246
BspACI CCGC 1 cut(s) 195
BspPI GGATC 3 cut(s) 71, 238, 254
BsrGI TGTACA 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 3 cut(s) 76, 230, 246
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 397
BstAUI TGTACA 1 cut(s) 407
BstC8I GCNNGC 3 cut(s) 15, 19, 309
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 3 cut(s) 79, 233, 249
BstMBI GATC 3 cut(s) 76, 230, 246
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 3 cut(s) 17, 21, 307
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 2 cut(s) 76, 246
BstYI RGATCY 2 cut(s) 76, 246
BtsCI GGATG 1 cut(s) 139
Cac8I GCNNGC 3 cut(s) 15, 19, 309
Csp6I GTAC 1 cut(s) 408
CviAII CATG 4 cut(s) 14, 18, 304, 400
CviJI RGCY 2 cut(s) 73, 272
CviKI_1 RGCY 2 cut(s) 73, 272
CviQI GTAC 1 cut(s) 408
DpnI GATC 3 cut(s) 78, 232, 248
DpnII GATC 3 cut(s) 76, 230, 246
EciI GGCGGA 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 19
FaeI CATG 4 cut(s) 17, 21, 307, 403
FatI CATG 4 cut(s) 13, 17, 303, 399
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 86
GluI GCNGC 1 cut(s) 273
Hin1II CATG 4 cut(s) 17, 21, 307, 403
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 2 cut(s) 191, 348
HphI GGTGA 1 cut(s) 378
Hpy166II GTNNAC 1 cut(s) 301
Hpy188III TCNNGA 2 cut(s) 143, 160
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 237, 286
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 4 cut(s) 13, 17, 21, 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 4 cut(s) 17, 21, 307, 403
Kzo9I GATC 3 cut(s) 76, 230, 246
LpnPI CCDG 8 cut(s) 87, 97, 145, 156, 162, 213, 240, 323
Lsp1109I GCAGC 1 cut(s) 259
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 238
MalI GATC 3 cut(s) 78, 232, 248
MboI GATC 3 cut(s) 76, 230, 246
MboII GAAGA 4 cut(s) 49, 202, 241, 355
MfeI CAATTG 1 cut(s) 100
MflI RGATCY 2 cut(s) 76, 246
MluCI AATT 2 cut(s) 100, 430
MmeI TCCRAC 2 cut(s) 50, 325
Mph1103I ATGCAT 1 cut(s) 19
MseI TTAA 1 cut(s) 433
MspR9I CCNGG 1 cut(s) 228
MunI CAATTG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 3 cut(s) 76, 230, 246
NlaIII CATG 4 cut(s) 17, 21, 307, 403
NsiI ATGCAT 1 cut(s) 19
NspI RCATGY 3 cut(s) 17, 21, 307
PaeI GCATGC 2 cut(s) 17, 21
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 191, 348
PkrI GCNGC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PsuI RGATCY 2 cut(s) 76, 246
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
SaqAI TTAA 1 cut(s) 433
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 3 cut(s) 76, 230, 246
ScrFI CCNGG 1 cut(s) 228
SetI ASST 2 cut(s) 241, 274
SphI GCATGC 2 cut(s) 17, 21
Sse9I AATT 2 cut(s) 100, 430
SsiI CCGC 1 cut(s) 195
SspI AATATT 1 cut(s) 9
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 100, 430
TatI WGTACW 1 cut(s) 407
TfiI GAWTC 2 cut(s) 191, 348
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 6 cut(s) 17, 128, 172, 202, 241, 305
XceI RCATGY 3 cut(s) 17, 21, 307
XspI CTAG 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.