Rh7CG142700

sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014909
Physical Location & Seq
Reverse (-)
11613580 .. 11614655
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG142700.1

Sequence Viewer

Length: 492 bp
ATGGCGAACACTGCTATGATCAGAACCGTCGTCGGCATTATCGGTAATATCATCTCGTTGGGTTTGTTTCTTTCTCCAATTCCAACTTTTGTGAAGATTGTCAAGCAAAAATCAGTTGCAGATTTCAAGCCAGATCCTTATCTAGCAACTCTGCTCAATTGTGCCGTCTGGGTTTTTTATGGAATGCCATTTGTTCATCCTGATAGCACCCTTGTCTGGACAATCAATGGTGCTGGTTTCATTATCGAATCCGCCTATATTGTCATCTTCATATTATACTCCCCTGGATCAAAACGTAGAAGAATCTTCATCGTTCTTGCGGTTGAAGCTGCCTTCTTTGCTGTTGTGGTTTTAGTCAACATGCTCGCTTTTCATACCACAAAAACCCGAACTCTGGTAGTTGGAATCATCTGTATCGTCTTCAATATCCTTATGTATGCTTCACCATTGACGGTCATGGTATGTACAAACTTTCCTATTGTGCTAAATTAA

Protein Analysis

163

Amino Acids

17.99

Weight (kDa)

9.51

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 10 - 95 8.4e-22 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28007
fragaria_vesca FvH4_5g05160
malus_domestica MD06G1176800.v1.1 MD14G1183000.v1.1
prunus_persica Prupe.5G175500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0193801
rosa_laevigata RLG00000004244
rosa_roxburghii Rroxscaffold_3G00261820
rosa_rugosa Rorug07G0012000 Rorug07G0012100
rosa_samantha Rh7AG138700 Rh7BG139000 Rh7CG142600 Rh7CG142700 Rh7DG140200
rosa_wichuraiana Rw7G011820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 252, 320
AclWI GGATC 2 cut(s) 128, 295
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 2 cut(s) 216, 394
AgsI TTSAA 3 cut(s) 127, 326, 424
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
AlwI GGATC 2 cut(s) 128, 295
ApeKI GCWGC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 412
BbvI GCAGC 1 cut(s) 316
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 285
BclI TGATCA 1 cut(s) 18
BfaI CTAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 412
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 394
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 216, 394
BseXI GCAGC 1 cut(s) 316
BslI CCNNNNNNNGG 2 cut(s) 216, 394
BsmI GAATGC 1 cut(s) 189
Bsp1407I TGTACA 1 cut(s) 464
Bsp143I GATC 3 cut(s) 18, 133, 287
BspACI CCGC 2 cut(s) 252, 320
BspPI GGATC 2 cut(s) 128, 295
BsrGI TGTACA 1 cut(s) 464
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 3 cut(s) 18, 133, 287
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 28, 454
BstAUI TGTACA 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 366
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 3 cut(s) 21, 136, 290
BstMBI GATC 3 cut(s) 18, 133, 287
BstMWI GCNNNNNNNGC 3 cut(s) 11, 326, 338
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 412
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 366
Csp6I GTAC 1 cut(s) 465
CviAII CATG 2 cut(s) 361, 457
CviJI RGCY 2 cut(s) 130, 329
CviKI_1 RGCY 2 cut(s) 130, 329
CviQI GTAC 1 cut(s) 465
DpnI GATC 3 cut(s) 20, 135, 289
DpnII GATC 3 cut(s) 18, 133, 287
EciI GGCGGA 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 364, 460
FatI CATG 2 cut(s) 360, 456
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 330
Hin1II CATG 2 cut(s) 364, 460
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 3 cut(s) 248, 303, 405
HphI GGTGA 1 cut(s) 435
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 2 cut(s) 200, 217
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 2 cut(s) 32, 35
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 28, 454
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 326, 338
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 2 cut(s) 364, 460
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 133, 287
LpnPI CCDG 8 cut(s) 144, 154, 202, 213, 219, 270, 297, 380
Lsp1109I GCAGC 1 cut(s) 316
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 295
MalI GATC 3 cut(s) 20, 135, 289
MboI GATC 3 cut(s) 18, 133, 287
MboII GAAGA 5 cut(s) 106, 259, 298, 312, 412
MfeI CAATTG 1 cut(s) 157
MflI RGATCY 1 cut(s) 133
MluCI AATT 3 cut(s) 78, 157, 487
MmeI TCCRAC 2 cut(s) 107, 382
MseI TTAA 1 cut(s) 490
MslI CAYNNNNRTG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 285
MunI CAATTG 1 cut(s) 157
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 3 cut(s) 11, 326, 338
NdeII GATC 3 cut(s) 18, 133, 287
NlaIII CATG 2 cut(s) 364, 460
NspI RCATGY 1 cut(s) 364
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 3 cut(s) 248, 303, 405
PkrI GCNGC 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 1 cut(s) 490
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 3 cut(s) 18, 133, 287
ScrFI CCNGG 1 cut(s) 285
SetI ASST 2 cut(s) 298, 331
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 3 cut(s) 78, 157, 487
SsiI CCGC 2 cut(s) 252, 320
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 2 cut(s) 28, 454
TaiI ACGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 246
TasI AATT 3 cut(s) 78, 157, 487
TatI WGTACW 1 cut(s) 464
TfiI GAWTC 3 cut(s) 248, 303, 405
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TscAI CASTG 1 cut(s) 16
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 5 cut(s) 185, 229, 259, 298, 362
TspRI CASTG 1 cut(s) 16
XceI RCATGY 1 cut(s) 364
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.