Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0014909

Physical Location & Seq

Genomic Coordinates Reverse (-)

31681969 .. 31683911

Gene Structure 1943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1176800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTTTCTGTCCCCAATACCAACATTTTATAGAATAGTAAAGCAAAAAACAGTATCAGATTTCAAGCCGGATCCCTACGTAGTAACATTGCTGAATTGTGCCTTATGGGTCTTCTACGGCATGCCCTTTGTCCATCCTGACAGCATTCTTGTGGTATCAATCAATGGCGCTGGAGTTGTCATCGAACTAGTCTACATTCTCGTCTTCCTCATCTTTTCTCTAGGCTCACAACGCCTAACGATCTTTAAAGCACTTGTGGTTGAAGTTATCTTCTTTGTTATTGTGGTTTTGGTTACCATGTACATTTTCCATACAACTAGACACCGGTCTTTGGTAGTTGGAATCATCTGCATTATCTTCAACATCCTTATGTATTTATCACCCTTGACAGTCATGCGTATGGTGATCAAGACAAAGAGCGTGAAGTATATGCCATTTTACCTGTCACTTGCTAACTTCTTCAATGGGGTTGTTTGGCTGGTCTACTCACTCCTTAAATTCGATGCCAATATTCTGCTTCCAAACGGTTTGGGAACGATTTCCGGCGCAGTGCAGCTCATTTTGTACGCCATATTCTACAGAACCACTCGATGGGAAGACGACGAGAATGACAGGCCGCGGTCAGAGGTCCAAGTGTCTAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

216

Amino Acids

24.64

Weight (kDa)

9.23

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	1 - 73	5.2e-17	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	112 - 195	5.2e-25	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28007
fragaria_vesca	FvH4_5g05160
malus_domestica	MD06G1176800.v1.1 MD14G1183000.v1.1
prunus_persica	Prupe.5G175500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193801
rosa_laevigata	RLG00000004244
rosa_roxburghii	Rroxscaffold_3G00261820
rosa_rugosa	Rorug07G0012000 Rorug07G0012100
rosa_samantha	Rh7AG138700 Rh7BG139000 Rh7CG142600 Rh7CG142700 Rh7DG140200
rosa_wichuraiana	Rw7G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	591
AccI	GTMKAC	2 cut(s)	192, 483
AccII	CGCG	1 cut(s)	619
AciI	CCGC	2 cut(s)	617, 619
AclWI	GGATC	2 cut(s)	65, 78
AcsI	RAATTY	1 cut(s)	497
AfaI	GTAC	2 cut(s)	302, 566
AfiI	CCNNNNNNNGG	2 cut(s)	331, 591
AgeI	ACCGGT	1 cut(s)	324
AgsI	TTSAA	4 cut(s)	64, 263, 361, 463
AhlI	ACTAGT	1 cut(s)	187
AluBI	AGCT	1 cut(s)	556
AluI	AGCT	1 cut(s)	556
AlwI	GGATC	2 cut(s)	65, 78
AoxI	GGCC	1 cut(s)	614
ApeKI	GCWGC	1 cut(s)	553
ApoI	RAATTY	1 cut(s)	497
AsiGI	ACCGGT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	538
AspLEI	GCGC	2 cut(s)	170, 548
AspS9I	GGNCC	1 cut(s)	628
AsuHPI	GGTGA	2 cut(s)	372, 415
AvaII	GGWCC	1 cut(s)	628
BamHI	GGATCC	1 cut(s)	70
BbsI	GAAGAC	3 cut(s)	103, 196, 603
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	2 cut(s)	141, 585
BceAI	ACGGC	1 cut(s)	133
BclI	TGATCA	1 cut(s)	405
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	3 cut(s)	188, 221, 318
BfmI	CTRYAG	1 cut(s)	577
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	2 cut(s)	554, 617
BlsI	GCNGC	2 cut(s)	555, 618
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	628
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	493
BoxI	GACNNNNGTC	1 cut(s)	325
BpiI	GAAGAC	3 cut(s)	103, 196, 603
BpmI	CTGGAG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	617
BsaWI	WCCGGW	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 591
Bse118I	RCCGGY	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	617
BseGI	GGATG	2 cut(s)	133, 363
BseLI	CCNNNNNNNGG	2 cut(s)	331, 591
BseMI	GCAATG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	565
BsgI	GTGCAG	1 cut(s)	572
Bsh1236I	CGCG	1 cut(s)	619
BshFI	GGCC	1 cut(s)	616
BshTI	ACCGGT	1 cut(s)	324
BsiSI	CCGG	3 cut(s)	68, 325, 543
BslI	CCNNNNNNNGG	2 cut(s)	331, 591
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	616
Bsp1407I	TGTACA	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	70, 240, 405
BspACI	CCGC	2 cut(s)	617, 619
BspANI	GGCC	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	65, 78
BsrDI	GCAATG	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	617
BssMI	GATC	3 cut(s)	70, 240, 405
Bst4CI	ACNGT	3 cut(s)	52, 391, 527
BstAUI	TGTACA	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	617
BstEII	GGTNACC	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	133, 363
BstFNI	CGCG	1 cut(s)	619
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	170, 548
BstKTI	GATC	3 cut(s)	73, 243, 408
BstMBI	GATC	3 cut(s)	70, 240, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	124
BstPAI	GACNNNNGTC	1 cut(s)	325
BstPI	GGTNACC	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	577
BstSNI	TACGTA	1 cut(s)	79
BstUI	CGCG	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	565
BstV2I	GAAGAC	3 cut(s)	103, 196, 603
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	616
BtgI	CCRYGG	1 cut(s)	617
BtsCI	GGATG	2 cut(s)	133, 363
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	1 cut(s)	122
CfoI	GCGC	2 cut(s)	170, 548
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	628
Cfr42I	CCGCGG	1 cut(s)	620
Csp6I	GTAC	2 cut(s)	301, 565
CspAI	ACCGGT	1 cut(s)	324
CviAII	CATG	3 cut(s)	121, 298, 394
CviJI	RGCY	5 cut(s)	67, 225, 478, 556, 616
CviKI_1	RGCY	5 cut(s)	67, 225, 478, 556, 616
CviQI	GTAC	2 cut(s)	301, 565
DpnI	GATC	3 cut(s)	72, 242, 407
DpnII	GATC	3 cut(s)	70, 240, 405
DraI	TTTAAA	1 cut(s)	247
Eco105I	TACGTA	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	628
Eco91I	GGTNACC	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	292
FaeI	CATG	3 cut(s)	124, 301, 397
FatI	CATG	3 cut(s)	120, 297, 393
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	2 cut(s)	192, 483
Fnu4HI	GCNGC	2 cut(s)	554, 617
FokI	GGATG	2 cut(s)	120, 350
Fsp4HI	GCNGC	2 cut(s)	554, 617
FspBI	CTAG	3 cut(s)	188, 221, 318
GlaI	GCGC	2 cut(s)	169, 547
GluI	GCNGC	2 cut(s)	554, 617
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	616
HapII	CCGG	3 cut(s)	68, 325, 543
HhaI	GCGC	2 cut(s)	170, 548
Hin1II	CATG	3 cut(s)	124, 301, 397
Hin6I	GCGC	2 cut(s)	168, 546
HinP1I	GCGC	2 cut(s)	168, 546
HinfI	GANTC	1 cut(s)	342
HpaII	CCGG	3 cut(s)	68, 325, 543
HphI	GGTGA	2 cut(s)	372, 415
Hpy166II	GTNNAC	2 cut(s)	193, 484
Hpy188I	TCNGA	2 cut(s)	58, 625
Hpy188III	TCNNGA	2 cut(s)	137, 409
Hpy8I	GTNNAC	2 cut(s)	193, 484
Hpy99I	CGWCG	1 cut(s)	605
HpyCH4III	ACNGT	3 cut(s)	52, 391, 527
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	351, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	124, 301, 397
HspAI	GCGC	2 cut(s)	168, 546
Ksp22I	TGATCA	1 cut(s)	405
KspI	CCGCGG	1 cut(s)	620
Kzo9I	GATC	3 cut(s)	70, 240, 405
LpnPI	CCDG	8 cut(s)	81, 150, 156, 338, 455, 464, 556, 598
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	3 cut(s)	188, 221, 318
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	3 cut(s)	82, 292, 444
MalI	GATC	3 cut(s)	72, 242, 407
MboI	GATC	3 cut(s)	70, 240, 405
MboII	GAAGA	6 cut(s)	103, 196, 262, 349, 451, 608
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	2 cut(s)	94, 497
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	2 cut(s)	218, 619
MroXI	GAANNNNTTC	1 cut(s)	538
MseI	TTAA	2 cut(s)	246, 495
MslI	CAYNNNNRTG	3 cut(s)	149, 368, 398
MspA1I	CMGCKG	1 cut(s)	619
MspI	CCGG	3 cut(s)	68, 325, 543
Mva1269I	GAATGC	1 cut(s)	144
MvnI	CGCG	1 cut(s)	619
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	3 cut(s)	70, 240, 405
NlaIII	CATG	3 cut(s)	124, 301, 397
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	444
NspI	RCATGY	1 cut(s)	124
PaeI	GCATGC	1 cut(s)	124
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	342
PflMI	CCANNNNNTGG	1 cut(s)	591
PinAI	ACCGGT	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	555, 618
Ppu21I	YACGTR	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	325
PspEI	GGTNACC	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	2 cut(s)	302, 566
RsaNI	GTAC	2 cut(s)	301, 565
RseI	CAYNNNNRTG	3 cut(s)	149, 368, 398
SacII	CCGCGG	1 cut(s)	620
SaqAI	TTAA	2 cut(s)	246, 495
SatI	GCNGC	2 cut(s)	554, 617
Sau3AI	GATC	3 cut(s)	70, 240, 405
Sau96I	GGNCC	1 cut(s)	628
SetI	ASST	4 cut(s)	81, 444, 558, 630
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	1 cut(s)	577
Sfr303I	CCGCGG	1 cut(s)	620
SgrBI	CCGCGG	1 cut(s)	620
SinI	GGWCC	1 cut(s)	628
SmiMI	CAYNNNNRTG	3 cut(s)	149, 368, 398
SnaBI	TACGTA	1 cut(s)	79
SpeI	ACTAGT	1 cut(s)	187
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	2 cut(s)	94, 497
SsiI	CCGC	2 cut(s)	617, 619
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	3 cut(s)	188, 221, 318
TaaI	ACNGT	3 cut(s)	52, 391, 527
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	183, 501, 589
TasI	AATT	2 cut(s)	94, 497
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	619
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	2 cut(s)	246, 495
Tru9I	TTAA	2 cut(s)	246, 495
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	1 cut(s)	553
Tsp45I	GTSAC	1 cut(s)	444
TspRI	CASTG	1 cut(s)	555
Van91I	CCANNNNNTGG	1 cut(s)	591
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	1 cut(s)	497
XceI	RCATGY	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	192, 483
XmnI	GAANNNNTTC	1 cut(s)	538
XspI	CTAG	3 cut(s)	188, 221, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.