Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014909

Physical Location & Seq

Genomic Coordinates Reverse (-)

14922045 .. 14924558

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G175500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTGGACACAGGCACAATCCGAATGGTTGTTGGCATTATCGGTAATGTCATCTCTTTGGGCTTGTTTCTCTCCCCAATCCCGACATTTTGTAGAATAATAAAACTAAAAACAGTAGCAGATTTCAAGCCGGACCCTTATGTAGCAACATTGCTCAATTGTGCTATGTGGGTTTTCTATGGCATGCCCTTTGTCCATCCCGACAGCATTCTCGTCATCACAATCAATGGCGCTGGATTTTTCATTGAATTAATCTATATTACCATCTTTATAATCTACTCTCCGGGCTCAAAACGCAAAAAGATCTTCATTGCACTTGTGACTGAAGTTATCTTCTTTGTTATTGTGGTTTTTGTGGTAATGTATTGTTTCCATACTACGAAACGCCGGTCTTTGATAGTTGGGATCATCTGTATTGTCTTCAACATCCTTATGTATGCATCACCATTGACAATCATGAAAATTGTCATCAAGACAAAGAGTGTAAAGTACATGCCATTTTATCTCTCGCTTGCTAGCCTCTTAAATGGAGTTGTCTGGGTGGTCTACGCACTTCTTAAATTTGATATTAATATTCTGATTCCAAATGGTTTGGGAGCGATTTCCGGCGTAGTACAACTCATCCTGTACGCCACCTTCTACAGAACCACCCGATGGGATGATGACGACGACGAAATGAATTCGAGATCGAAGGTCCAAATGTCCAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

238

Amino Acids

26.77

Weight (kDa)

9.33

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28007
fragaria_vesca	FvH4_5g05160
malus_domestica	MD06G1176800.v1.1 MD14G1183000.v1.1
prunus_persica	Prupe.5G175500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193801
rosa_laevigata	RLG00000004244
rosa_roxburghii	Rroxscaffold_3G00261820
rosa_rugosa	Rorug07G0012000 Rorug07G0012100
rosa_samantha	Rh7AG138700 Rh7BG139000 Rh7CG142600 Rh7CG142700 Rh7DG140200
rosa_wichuraiana	Rw7G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	654
AccI	GTMKAC	1 cut(s)	546
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	2 cut(s)	560, 679
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	3 cut(s)	491, 615, 629
AfiI	CCNNNNNNNGG	1 cut(s)	654
AgsI	TTSAA	3 cut(s)	127, 248, 424
AlwI	GGATC	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	560, 679
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AseI	ATTAAT	2 cut(s)	251, 570
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	133, 694
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	435
AsuNHI	GCTAGC	1 cut(s)	515
AvaII	GGWCC	2 cut(s)	133, 694
BanII	GRGCYC	1 cut(s)	290
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BbsI	GAAGAC	1 cut(s)	412
BccI	CCATC	3 cut(s)	204, 272, 648
BcnI	CCSGG	1 cut(s)	285
BfaI	CTAG	2 cut(s)	516, 712
BfmI	CTRYAG	1 cut(s)	640
BfoI	RGCGCY	1 cut(s)	234
BglII	AGATCT	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	2 cut(s)	133, 694
BmgT120I	GGNCC	2 cut(s)	133, 694
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	449
BmtI	GCTAGC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	412
BpuMI	CCSGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse118I	RCCGGY	1 cut(s)	387
Bse3DI	GCAATG	2 cut(s)	149, 309
BseGI	GGATG	4 cut(s)	196, 426, 621, 664
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMI	GCAATG	2 cut(s)	149, 309
BsiSI	CCGG	4 cut(s)	131, 284, 388, 606
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmI	GAATGC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	3 cut(s)	303, 405, 686
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	135
BspOI	GCTAGC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	413
BsrDI	GCAATG	2 cut(s)	149, 309
BsrFI	RCCGGY	1 cut(s)	387
BssAI	RCCGGY	1 cut(s)	387
BssMI	GATC	3 cut(s)	303, 405, 686
Bst4CI	ACNGT	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	185, 513, 517
BstF5I	GGATG	4 cut(s)	196, 426, 621, 664
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	3 cut(s)	306, 408, 689
BstMBI	GATC	3 cut(s)	303, 405, 686
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNSI	RCATGY	2 cut(s)	187, 496
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	640
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BtsCI	GGATG	4 cut(s)	196, 426, 621, 664
Cac8I	GCNNGC	3 cut(s)	185, 513, 517
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	2 cut(s)	133, 694
Csp6I	GTAC	3 cut(s)	490, 614, 628
CviAII	CATG	3 cut(s)	184, 457, 493
CviJI	RGCY	4 cut(s)	63, 130, 288, 519
CviKI_1	RGCY	4 cut(s)	63, 130, 288, 519
CviQI	GTAC	3 cut(s)	490, 614, 628
DpnI	GATC	3 cut(s)	305, 407, 688
DpnII	GATC	3 cut(s)	303, 405, 686
Eco24I	GRGCYC	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	133, 694
Eco57I	CTGAAG	1 cut(s)	345
EcoRI	GAATTC	1 cut(s)	679
EcoT22I	ATGCAT	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	290
FaeI	CATG	3 cut(s)	187, 460, 496
FatI	CATG	3 cut(s)	183, 456, 492
FblI	GTMKAC	1 cut(s)	546
FokI	GGATG	4 cut(s)	183, 413, 608, 671
FriOI	GRGCYC	1 cut(s)	290
FspBI	CTAG	2 cut(s)	516, 712
GlaI	GCGC	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	234
HapII	CCGG	4 cut(s)	131, 284, 388, 606
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	187, 460, 496
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	580
HpaII	CCGG	4 cut(s)	131, 284, 388, 606
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	2 cut(s)	7, 547
Hpy188I	TCNGA	2 cut(s)	23, 579
Hpy188III	TCNNGA	5 cut(s)	82, 200, 457, 472, 684
Hpy8I	GTNNAC	2 cut(s)	7, 547
Hpy99I	CGWCG	2 cut(s)	671, 674
HpyAV	CCTTC	2 cut(s)	646, 685
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	314, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	187, 460, 496
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	303, 405, 686
LmnI	GCTCC	1 cut(s)	596
LpnPI	CCDG	7 cut(s)	144, 219, 297, 401, 523, 619, 638
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	2 cut(s)	516, 712
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	305, 407, 688
MboI	GATC	3 cut(s)	303, 405, 686
MboII	GAAGA	3 cut(s)	298, 325, 412
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	5 cut(s)	157, 248, 462, 560, 679
MnlI	CCTC	1 cut(s)	530
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	4 cut(s)	251, 524, 558, 570
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	4 cut(s)	131, 284, 388, 606
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	1 cut(s)	157
Mva1269I	GAATGC	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	294
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	3 cut(s)	303, 405, 686
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	3 cut(s)	187, 460, 496
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	319
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	2 cut(s)	187, 496
PaeI	GCATGC	1 cut(s)	187
PagI	TCATGA	1 cut(s)	456
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	580
PflMI	CCANNNNNTGG	1 cut(s)	654
PshBI	ATTAAT	2 cut(s)	251, 570
PsiI	TTATAA	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	133, 694
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	3 cut(s)	491, 615, 629
RsaNI	GTAC	3 cut(s)	490, 614, 628
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	4 cut(s)	251, 524, 558, 570
Sau3AI	GATC	3 cut(s)	303, 405, 686
Sau96I	GGNCC	2 cut(s)	133, 694
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	2 cut(s)	638, 696
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	2 cut(s)	133, 694
SmiMI	CAYNNNNRTG	1 cut(s)	431
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	5 cut(s)	157, 248, 462, 560, 679
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	2 cut(s)	516, 712
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	2 cut(s)	683, 689
TasI	AATT	5 cut(s)	157, 248, 462, 560, 679
TatI	WGTACW	2 cut(s)	489, 613
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	4 cut(s)	251, 524, 558, 570
Tru9I	TTAA	4 cut(s)	251, 524, 558, 570
TseFI	GTSAC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	232, 298, 473, 692
Van91I	CCANNNNNTGG	1 cut(s)	654
VpaK11BI	GGWCC	2 cut(s)	133, 694
VspI	ATTAAT	2 cut(s)	251, 570
XapI	RAATTY	2 cut(s)	560, 679
XceI	RCATGY	2 cut(s)	187, 496
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	2 cut(s)	516, 712
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.