Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014909

Physical Location & Seq

Genomic Coordinates Forward (+)

57588106 .. 57589644

Gene Structure 1539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004244

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGAACACCGCTATGATCAGAACCGTCGTGGGCATTATCGGTAATATCATCTCGTTGGGTTTGTTTCTTTCTCCAATTCCAACTTTTGTGAAGATTGTCAAGCAAAAATCAGTTGCAGATTTCAAGCCAGATCCTTATCTAGCAACTCTGCTCAATTGTGCCGTCTGGGTATTTTATGGAATGCCATTTGTTCATCCTGATAGCACCCTTGTCTGGACAATCAATGGTGCTGGTTTCATTATCGAATCCGCCTATACTGTCATCTTCATATTATACTCCCCTGGATCAAAACGTAGAAGGATCTTCATCGTTCTTGCGGTTGAAGCTGCATTCTTTGCTGTTGTGGTTTTAGTCAACATGCTCGCTTTTCATACAACAAAAACCCGTACTCTGGTAGTTGGAATCATCTGTATCGTCTTCAATATCCTTATGTATGCTTCACCATTGACGGTCATGAAAATGGTGATCAAGACAAAGAGTGTCAAATACATGCCATTTTATCTTTCATTAGCCAACTTCTGTAATGGAATTGTTTGGCTTATTTACGCGCTTCTCAAATTTGATATCAATATTCTGCTTCCCAATGGGTTGGGAGCTCTATCTGGCTTGGTGCAACTCATTCTATACGCTACATTCTACAAGACCACCCGATGGGAAGACGACGACGACGAGAAGTCACGATCAGAAGTCCAGCTCTCGAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

237

Amino Acids

26.4

Weight (kDa)

9.32

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 95	2.8e-21	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 216	2.7e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28007
fragaria_vesca	FvH4_5g05160
malus_domestica	MD06G1176800.v1.1 MD14G1183000.v1.1
prunus_persica	Prupe.5G175500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193801
rosa_laevigata	RLG00000004244
rosa_roxburghii	Rroxscaffold_3G00261820
rosa_rugosa	Rorug07G0012000 Rorug07G0012100
rosa_samantha	Rh7AG138700 Rh7BG139000 Rh7CG142600 Rh7CG142700 Rh7DG140200
rosa_wichuraiana	Rw7G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	654
AccII	CGCG	1 cut(s)	551
AciI	CCGC	3 cut(s)	12, 252, 320
AclWI	GGATC	3 cut(s)	128, 295, 311
AcsI	RAATTY	1 cut(s)	560
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	3 cut(s)	216, 394, 654
AgsI	TTSAA	3 cut(s)	127, 326, 424
AhdI	GACNNNNNGTC	1 cut(s)	676
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	3 cut(s)	329, 599, 697
AluI	AGCT	3 cut(s)	329, 599, 697
Alw21I	GWGCWC	1 cut(s)	601
AlwI	GGATC	3 cut(s)	128, 295, 311
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	553
AsuHPI	GGTGA	2 cut(s)	435, 478
BanII	GRGCYC	1 cut(s)	601
BbsI	GAAGAC	2 cut(s)	412, 666
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	648
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	2 cut(s)	18, 468
BfaI	CTAG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	285
BmeRI	GACNNNNNGTC	1 cut(s)	676
BmrFI	CCNGG	1 cut(s)	285
BpiI	GAAGAC	2 cut(s)	412, 666
BsaBI	GATNNNNATC	2 cut(s)	138, 308
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 394, 654
Bse8I	GATNNNNATC	2 cut(s)	138, 308
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	2 cut(s)	138, 308
BseLI	CCNNNNNNNGG	3 cut(s)	216, 394, 654
BseXI	GCAGC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	601
BslI	CCNNNNNNNGG	3 cut(s)	216, 394, 654
BsmI	GAATGC	2 cut(s)	189, 332
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	6 cut(s)	18, 133, 287, 303, 468, 683
BspACI	CCGC	3 cut(s)	12, 252, 320
BspFNI	CGCG	1 cut(s)	551
BspHI	TCATGA	1 cut(s)	456
BspPI	GGATC	3 cut(s)	128, 295, 311
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	6 cut(s)	18, 133, 287, 303, 468, 683
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	3 cut(s)	28, 262, 454
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	6 cut(s)	21, 136, 290, 306, 471, 686
BstMBI	GATC	6 cut(s)	18, 133, 287, 303, 468, 683
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 326, 338
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	2 cut(s)	364, 496
BstSCI	CCNGG	1 cut(s)	283
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	2 cut(s)	412, 666
BstX2I	RGATCY	2 cut(s)	133, 303
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	2 cut(s)	133, 303
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	553
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	3 cut(s)	361, 457, 493
CviJI	RGCY	7 cut(s)	130, 329, 515, 541, 599, 609, 697
CviKI_1	RGCY	7 cut(s)	130, 329, 515, 541, 599, 609, 697
CviQI	GTAC	1 cut(s)	390
DpnI	GATC	6 cut(s)	20, 135, 289, 305, 470, 685
DpnII	GATC	6 cut(s)	18, 133, 287, 303, 468, 683
DriI	GACNNNNNGTC	1 cut(s)	676
Eam1105I	GACNNNNNGTC	1 cut(s)	676
EciI	GGCGGA	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	601
Eco32I	GATATC	1 cut(s)	568
Eco53kI	GAGCTC	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	601
FaeI	CATG	3 cut(s)	364, 460, 496
FatI	CATG	3 cut(s)	360, 456, 492
FbaI	TGATCA	2 cut(s)	18, 468
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	183
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	330
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	3 cut(s)	364, 460, 496
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	2 cut(s)	248, 405
HphI	GGTGA	2 cut(s)	435, 478
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	23, 688
Hpy188III	TCNNGA	6 cut(s)	200, 217, 457, 472, 681, 700
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	4 cut(s)	32, 668, 671, 674
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	3 cut(s)	28, 262, 454
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	3 cut(s)	119, 332, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 326, 338
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	3 cut(s)	364, 460, 496
HspAI	GCGC	1 cut(s)	551
Ksp22I	TGATCA	2 cut(s)	18, 468
Kzo9I	GATC	6 cut(s)	18, 133, 287, 303, 468, 683
LmnI	GCTCC	1 cut(s)	596
Lsp1109I	GCAGC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	678
MalI	GATC	6 cut(s)	20, 135, 289, 305, 470, 685
MboI	GATC	6 cut(s)	18, 133, 287, 303, 468, 683
MboII	GAAGA	5 cut(s)	106, 259, 298, 412, 671
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	2 cut(s)	133, 303
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	4 cut(s)	78, 157, 531, 560
MmeI	TCCRAC	2 cut(s)	107, 382
MslI	CAYNNNNRTG	2 cut(s)	14, 461
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	1 cut(s)	157
Mva1269I	GAATGC	2 cut(s)	189, 332
MvaI	CCWGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	3 cut(s)	11, 326, 338
NdeII	GATC	6 cut(s)	18, 133, 287, 303, 468, 683
NlaIII	CATG	3 cut(s)	364, 460, 496
NmuCI	GTSAC	1 cut(s)	678
NspI	RCATGY	2 cut(s)	364, 496
PagI	TCATGA	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	669
PctI	GAATGC	2 cut(s)	189, 332
PfeI	GAWTC	2 cut(s)	248, 405
PflMI	CCANNNNNTGG	1 cut(s)	654
PkrI	GCNGC	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	133, 303
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	2 cut(s)	14, 461
SacI	GAGCTC	1 cut(s)	601
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	6 cut(s)	18, 133, 287, 303, 468, 683
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	601
SetI	ASST	4 cut(s)	298, 331, 601, 699
SmiMI	CAYNNNNRTG	2 cut(s)	14, 461
Sse9I	AATT	4 cut(s)	78, 157, 531, 560
SsiI	CCGC	3 cut(s)	12, 252, 320
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	601
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	28, 262, 454
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	2 cut(s)	246, 701
TasI	AATT	4 cut(s)	78, 157, 531, 560
TfiI	GAWTC	2 cut(s)	248, 405
TseFI	GTSAC	1 cut(s)	678
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	678
TspDTI	ATGAA	7 cut(s)	185, 229, 259, 298, 362, 473, 498
Van91I	CCANNNNNTGG	1 cut(s)	654
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	2 cut(s)	364, 496
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.