Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0014909

Physical Location & Seq

Genomic Coordinates Reverse (-)

11613137 .. 11613559

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG142600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCATGTTTCAATGAGAACAATGATACATTTATTTCTTGGGTGGCAGAAAATGGTGATCAAGACAAAGAGTGTCAAATACATGCCATTTTATCTTTCATTAGCCAACTTCTGTAATGGAATTGTTTGGCTTATTTACGCGCTTCTCAAATTTGATATCAATATTCTGCTTCCCAATGGGTTGGGAGCTCTATCTGGCTTGGTGCAACTCATTCTATACGCTACATTCTACAAGACCACCCGATGGGAAGATGACGACGACGGTCAGAAGTCACGATCAGAAGTCCAGCTCTCGAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

100

Amino Acids

11.56

Weight (kDa)

9.13

Isoelectric Point (pI)

63.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	17 - 79	1.2e-16	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28007
fragaria_vesca	FvH4_5g05160
malus_domestica	MD06G1176800.v1.1 MD14G1183000.v1.1
prunus_persica	Prupe.5G175500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193801
rosa_laevigata	RLG00000004244
rosa_roxburghii	Rroxscaffold_3G00261820
rosa_rugosa	Rorug07G0012000 Rorug07G0012100
rosa_samantha	Rh7AG138700 Rh7BG139000 Rh7CG142600 Rh7CG142700 Rh7DG140200
rosa_wichuraiana	Rw7G011820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	243
AccII	CGCG	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	2 cut(s)	188, 289
AluI	AGCT	2 cut(s)	188, 289
Alw21I	GWGCWC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	190
BccI	CCATC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	57
BoxI	GACNNNNGTC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	57, 275
BspFNI	CGCG	1 cut(s)	140
BssMI	GATC	2 cut(s)	57, 275
Bst4CI	ACNGT	1 cut(s)	263
BstFNI	CGCG	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	2 cut(s)	60, 278
BstMBI	GATC	2 cut(s)	57, 275
BstNSI	RCATGY	2 cut(s)	8, 85
BstPAI	GACNNNNGTC	1 cut(s)	261
BstUI	CGCG	1 cut(s)	140
BstXI	CCANNNNNNTGG	1 cut(s)	181
CfoI	GCGC	1 cut(s)	142
CviAII	CATG	2 cut(s)	5, 82
CviJI	RGCY	5 cut(s)	104, 130, 188, 198, 289
CviKI_1	RGCY	5 cut(s)	104, 130, 188, 198, 289
DpnI	GATC	2 cut(s)	59, 277
DpnII	GATC	2 cut(s)	57, 275
Ecl136II	GAGCTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	190
FaeI	CATG	2 cut(s)	8, 85
FaiI	YATR	3 cut(s)	6, 83, 217
FatI	CATG	2 cut(s)	4, 81
FbaI	TGATCA	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	190
GlaI	GCGC	1 cut(s)	141
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	2 cut(s)	8, 85
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	267, 280
Hpy188III	TCNNGA	3 cut(s)	61, 273, 292
Hpy99I	CGWCG	2 cut(s)	260, 263
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	4, 205
Hsp92II	CATG	2 cut(s)	8, 85
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	57, 275
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	2 cut(s)	180, 299
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	2 cut(s)	59, 277
MboI	GATC	2 cut(s)	57, 275
MboII	GAAGA	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	120, 149
Mph1103I	ATGCAT	1 cut(s)	6
MvnI	CGCG	1 cut(s)	140
NdeII	GATC	2 cut(s)	57, 275
NlaIII	CATG	2 cut(s)	8, 85
NmuCI	GTSAC	1 cut(s)	270
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 85
PflMI	CCANNNNNTGG	1 cut(s)	243
PshAI	GACNNNNGTC	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	190
Sau3AI	GATC	2 cut(s)	57, 275
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	2 cut(s)	190, 291
Sse9I	AATT	2 cut(s)	120, 149
SspI	AATATT	1 cut(s)	163
SstI	GAGCTC	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	293
TasI	AATT	2 cut(s)	120, 149
TseFI	GTSAC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	87
Van91I	CCANNNNNTGG	1 cut(s)	243
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	2 cut(s)	8, 85
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.