Rorug07G0012100

sugar transporter

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
973074 .. 973584
511 bp
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UTR
Exon/CDS
Intron
Rorug07G0012100.1

Sequence Viewer

Length: 381 bp
ATGGAAAAGATTCACAATGCAATCTCAAAGGCTGATCTTGCAAACAAAATTAAAGTCTCCACTGCCGTTCAACCTGTAATTCTCCAGGAATCCTACCCTCCATCAAAAGGATCATTCAGGCAGGATTATCGACCATTTCTTGATCCTATCATTGATGGCCAGCATGGCTATCAAAACTTGTTTGATGCAATTCTTGATGCACATTACTCTGCTTTAGAGAAGGCCGGGGGCAGTTCTTTGACAATTGTTGTATCAGAGATTGGTTGGCCCTCCGCTGGTGGTGATGGCCAAGTGACAACAAAGGAGAATGCGAAAATTTACAACTCAAATGTGGTCAAGCATGTCAAGCTTGGTACTCCGAAGAAGCCTGAGTTCCCATAG

Protein Analysis

126

Amino Acids

13.72

Weight (kDa)

7.94

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 1 - 51 2e-11 Glycosyl hydrolases family 17
Glyco_hydro_17 PF00332 55 - 124 1.1e-20 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014909)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 273
AclWI GGATC 2 cut(s) 118, 137
AcoI YGGCCR 2 cut(s) 157, 286
AcsI RAATTY 1 cut(s) 315
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 2 cut(s) 107, 275
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 2 cut(s) 118, 137
AoxI GGCC 4 cut(s) 157, 222, 266, 286
ApoI RAATTY 1 cut(s) 315
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
Asp700I GAANNNNTTC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 267
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 293
BalI TGGCCA 2 cut(s) 159, 288
BccI CCATC 3 cut(s) 109, 149, 278
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BciT130I CCWGG 1 cut(s) 86
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 61
BglI GCCNNNNNGGC 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 86, 226
BmgT120I GGNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 86, 226
BmsI GCATC 2 cut(s) 175, 187
BpmI CTGGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 275
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 107, 275
BseMII CTCAG 1 cut(s) 360
BshFI GGCC 4 cut(s) 159, 224, 268, 288
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 2 cut(s) 107, 275
BsmAI GTCTC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 4 cut(s) 159, 224, 268, 288
Bsp143I GATC 3 cut(s) 34, 110, 142
BspACI CCGC 1 cut(s) 273
BspANI GGCC 4 cut(s) 159, 224, 268, 288
BspCNI CTCAG 1 cut(s) 361
BspPI GGATC 2 cut(s) 118, 137
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 3 cut(s) 34, 110, 142
Bst2UI CCWGG 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 369
BstKTI GATC 3 cut(s) 37, 113, 145
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 3 cut(s) 34, 110, 142
BstMWI GCNNNNNNNGC 3 cut(s) 38, 165, 346
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 2 cut(s) 84, 224
BsuRI GGCC 4 cut(s) 159, 224, 268, 288
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 354
CviAII CATG 2 cut(s) 164, 341
CviJI RGCY 8 cut(s) 32, 159, 168, 224, 268, 288, 349, 367
CviKI_1 RGCY 8 cut(s) 32, 159, 168, 224, 268, 288, 349, 367
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 369
DpnI GATC 3 cut(s) 36, 112, 144
DpnII GATC 3 cut(s) 34, 110, 142
EaeI YGGCCR 2 cut(s) 157, 286
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 167, 344
FaiI YATR 3 cut(s) 165, 342, 379
FatI CATG 2 cut(s) 163, 340
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 4 cut(s) 159, 224, 268, 288
HapII CCGG 1 cut(s) 225
Hin1II CATG 2 cut(s) 167, 344
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 2 cut(s) 10, 89
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 2 cut(s) 256, 360
Hpy188III TCNNGA 2 cut(s) 140, 194
HpyAV CCTTC 1 cut(s) 214
HpyCH4V TGCA 4 cut(s) 20, 41, 188, 200
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 165, 346
HpyF3I CTNAG 1 cut(s) 369
Hsp92II CATG 2 cut(s) 167, 344
Kzo9I GATC 3 cut(s) 34, 110, 142
LpnPI CCDG 8 cut(s) 71, 87, 98, 103, 107, 173, 238, 261
LweI GCATC 2 cut(s) 175, 187
MaeIII GTNAC 1 cut(s) 292
MalI GATC 3 cut(s) 36, 112, 144
MboI GATC 3 cut(s) 34, 110, 142
MboII GAAGA 1 cut(s) 373
MfeI CAATTG 1 cut(s) 243
MlsI TGGCCA 2 cut(s) 159, 288
MluCI AATT 5 cut(s) 48, 78, 189, 243, 315
MluNI TGGCCA 2 cut(s) 159, 288
MnlI CCTC 2 cut(s) 108, 280
Mox20I TGGCCA 2 cut(s) 159, 288
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 2 cut(s) 159, 288
MseI TTAA 1 cut(s) 51
Msp20I TGGCCA 2 cut(s) 159, 288
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 86, 226
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 38, 165, 346
NciI CCSGG 1 cut(s) 226
NdeII GATC 3 cut(s) 34, 110, 142
NlaIII CATG 2 cut(s) 167, 344
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 1 cut(s) 344
PctI GAATGC 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 10, 89
PfoI TCCNGGA 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspPI GGNCC 1 cut(s) 267
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 3 cut(s) 34, 110, 142
Sau96I GGNCC 1 cut(s) 267
ScrFI CCNGG 2 cut(s) 86, 226
SetI ASST 2 cut(s) 76, 351
SfaNI GCATC 2 cut(s) 175, 187
Sse9I AATT 5 cut(s) 48, 78, 189, 243, 315
SsiI CCGC 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 84, 224
TaqI TCGA 1 cut(s) 130
TasI AATT 5 cut(s) 48, 78, 189, 243, 315
TfiI GAWTC 2 cut(s) 10, 89
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspRI CASTG 1 cut(s) 67
XapI RAATTY 1 cut(s) 315
XceI RCATGY 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.