Rh7DG140200

sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014909
Physical Location & Seq
Reverse (-)
11945168 .. 11947725
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG140200.1

Sequence Viewer

Length: 486 bp
ATGAAGTCTATGATTTGTACGAGTTATGAAATGGCTAGATACTTAACTTTGGTTTTTTTTTTTTGTCAGAGAAGGATCTTCATCGTTCTTGCGGTTGAAGCTGCCTTCTTTGCTGTTGTGGTTTTAGTCAACATGCTCGCCTTTCATACCACAAAAACCCGAACTCTGGTAGTTGGAATCATCTGTATCGTCTTCAATATCCTTATGTATGCTTCACCATTGACGGTCATGAAAATGGTGATCAAGACAAAGAGTGTCAAATACATGCCATTTTATCTTTCATTAGCCAACTTCTGTAATGGAATTGTTTGGCTTATTTACGCGCTTCTCAAATTTGATATCAATATTCTGCTTCCCAATGGGTTGGGAGCTCTATCTGGCTTGGTGCAACTCATTCTATACGCTACATTCTACAAGACCACCCGATGGGAAGATGACGACGACGATCAGAAGTCACGATCAGAAGTCCAGCTCTCGAATGTTTAG

Protein Analysis

161

Amino Acids

18.46

Weight (kDa)

9.08

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 57 - 140 1.1e-24 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28007
fragaria_vesca FvH4_5g05160
malus_domestica MD06G1176800.v1.1 MD14G1183000.v1.1
prunus_persica Prupe.5G175500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0193801
rosa_laevigata RLG00000004244
rosa_roxburghii Rroxscaffold_3G00261820
rosa_rugosa Rorug07G0012000 Rorug07G0012100
rosa_samantha Rh7AG138700 Rh7BG139000 Rh7CG142600 Rh7CG142700 Rh7DG140200
rosa_wichuraiana Rw7G011820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 426
AccII CGCG 1 cut(s) 323
AciI CCGC 1 cut(s) 92
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 332
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 166, 426
AgsI TTSAA 2 cut(s) 98, 196
AluBI AGCT 3 cut(s) 101, 371, 472
AluI AGCT 3 cut(s) 101, 371, 472
Alw21I GWGCWC 1 cut(s) 373
AlwI GGATC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 332
AspLEI GCGC 1 cut(s) 325
AsuHPI GGTGA 2 cut(s) 207, 250
BanII GRGCYC 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 420
BclI TGATCA 1 cut(s) 240
BfaI CTAG 1 cut(s) 36
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 426
Bse8I GATNNNNATC 1 cut(s) 80
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 2 cut(s) 166, 426
BseXI GCAGC 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 166, 426
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 4 cut(s) 75, 240, 445, 458
BspACI CCGC 1 cut(s) 92
BspFNI CGCG 1 cut(s) 323
BspHI TCATGA 1 cut(s) 228
BspPI GGATC 1 cut(s) 83
BssMI GATC 4 cut(s) 75, 240, 445, 458
Bst4CI ACNGT 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 138
BstFNI CGCG 1 cut(s) 323
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 4 cut(s) 78, 243, 448, 461
BstMBI GATC 4 cut(s) 75, 240, 445, 458
BstMWI GCNNNNNNNGC 2 cut(s) 98, 110
BstNSI RCATGY 2 cut(s) 136, 268
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 75
BstXI CCANNNNNNTGG 1 cut(s) 364
BstYI RGATCY 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 138
CciI TCATGA 1 cut(s) 228
CfoI GCGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 18
CviAII CATG 3 cut(s) 133, 229, 265
CviJI RGCY 7 cut(s) 35, 101, 287, 313, 371, 381, 472
CviKI_1 RGCY 7 cut(s) 35, 101, 287, 313, 371, 381, 472
CviQI GTAC 1 cut(s) 18
DpnI GATC 4 cut(s) 77, 242, 447, 460
DpnII GATC 4 cut(s) 75, 240, 445, 458
Ecl136II GAGCTC 1 cut(s) 371
Eco24I GRGCYC 1 cut(s) 373
Eco32I GATATC 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 371
EcoRV GATATC 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 373
FaeI CATG 3 cut(s) 136, 232, 268
FaiI YATR 9 cut(s) 11, 27, 134, 147, 206, 210, 230, 266, 400
FatI CATG 3 cut(s) 132, 228, 264
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 324
GluI GCNGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 325
Hin1II CATG 3 cut(s) 136, 232, 268
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 1 cut(s) 177
HphI GGTGA 2 cut(s) 207, 250
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 69, 450, 463
Hpy188III TCNNGA 4 cut(s) 229, 244, 456, 475
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 2 cut(s) 443, 446
HpyAV CCTTC 2 cut(s) 66, 115
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 110
Hsp92II CATG 3 cut(s) 136, 232, 268
HspAI GCGC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 4 cut(s) 75, 240, 445, 458
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 3 cut(s) 152, 363, 482
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 453
MalI GATC 4 cut(s) 77, 242, 447, 460
MboI GATC 4 cut(s) 75, 240, 445, 458
MboII GAAGA 3 cut(s) 70, 184, 443
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 2 cut(s) 303, 332
MmeI TCCRAC 1 cut(s) 154
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 233
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 98, 110
NdeII GATC 4 cut(s) 75, 240, 445, 458
NlaIII CATG 3 cut(s) 136, 232, 268
NmuCI GTSAC 1 cut(s) 453
NspI RCATGY 2 cut(s) 136, 268
PagI TCATGA 1 cut(s) 228
PfeI GAWTC 1 cut(s) 177
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 373
PsuI RGATCY 1 cut(s) 75
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 4 cut(s) 75, 240, 445, 458
SduI GDGCHC 1 cut(s) 373
SetI ASST 3 cut(s) 103, 373, 474
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 2 cut(s) 303, 332
SsiI CCGC 1 cut(s) 92
SspI AATATT 1 cut(s) 346
SspMI CTAG 1 cut(s) 36
SstI GAGCTC 1 cut(s) 373
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 1 cut(s) 476
TasI AATT 2 cut(s) 303, 332
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 6 cut(s) 17, 42, 70, 134, 245, 270
Van91I CCANNNNNTGG 1 cut(s) 426
XapI RAATTY 1 cut(s) 332
XceI RCATGY 2 cut(s) 136, 268
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.