Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008370

Physical Location & Seq

Genomic Coordinates Reverse (-)

3409017 .. 3413552

Gene Structure 4536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05750.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGGGATAACAATAGGGGGTGAAATAGAGAGGGTGAATGGGAAGGAGGTGAGTTACAGTGAGTTTGTGGAGAGGTACATGGAGAAGAACCAGCCTGTGGTGCTGACTGGTCTCATGGAGGATTGGAGGGCTTGCAGAGATTGGGTTCAAGATGATGGCAAGCCCAATCTTCAGTTTTTCGCTACCCATTTTGGGAAATCCAAAGTTCAGGTTGCAGATTGCGGTACGAGGGAATTTACAGATCAGAAGAGATTGGAAATGACTGTTGGAATATTTGTTGAGCAATGGCCTGGGGATTCTGAGGAGGAGGAGGAGGGTGGTAGTGCTCCGAGTCAGGCAGCTGGGAGCAAGATGCTGCTGTATTTGAAGGACTGGCATTTTGTGAAGGAGTACCCAGAATACACAGCATACACAACTCCGATGTTCTTTTGTGATGATTGGCTCAACATGTACCTTGACAATCATCGTATGCACAATGACCCCGACATTTACTCGGAAAACAATGACATAAGCTGCTCAGATTATCGATTTGTTTACATGGGAGCAAAAGGCACATGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGCTGGTCAGCAAATGTATGTGGAAAAAAACGGTGGCTTTTCCTGCCTCCTTCTCAAAGTCATCTGGTGTTTGACAGGAATATGAAGAGCAGTGTATATAATATCCTTGATGATGTGAGTGAAACAAAGTTTCCTGGTTTTGCAAAGACTATTTGGTTGGAGTGCACTCAAGAACAAAATGACATTATCTTTGTGCCTAGCGGATGGTATCATCAAGTCCATAATTTGGAAGATACCATATCAATAAACCACAACTGGTTCAATGCTAATAATCTACGTTGGGTGTGGGATTTGCTTTTGAGGGACTACAATGAGTCTAAGGAGTACATAGAAGACATTAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAACCTTGCCGCTAACACAGGCATGAACTTTAATGATTTCTTGATATTCCTAGCACGTTTTTCCTTTGCAAACTTGATTCGACTTCAGTATGTCAGTAGGAAGAATGGGAATCAGACTCGGAACTTATCCCCAATAACTCAGCATTTCACTTTCAACCTTGTATCAATTCAGAAAATTGCGTCCAGGATAAGCTCCTTGCAAGATCCAGGAAGTCATGGTTTTTGTTTGGATTTTAGGGAAACCTTGAAAGATCCTGGGTTCATTAGACTTTGTGCAGTTTTGGGGAAAACATATGGGATGATACACGTGCGAGAAAACTGGAATTTCGATATGGAGAAAGCTTGGATAGATGATATGAAGGACTTGGACGTTATAGGAACTTGTAATTCTCAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 JmjC

Protein Analysis

456

Amino Acids

53.11

Weight (kDa)

5.04

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	21 - 285	1.4e-25	Cupin-like domain
JmjC	PF02373	178 - 283	2.3e-17	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63080
fragaria_vesca	FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750
malus_domestica	MD14G1175900.v1.1
prunus_persica	Prupe.5G169900_v2.0.a1
pyrus_communis	pycom14g08050 pycom14g14700
rosa_chinensis	RchiOBHm_Chr7g0193061
rosa_laevigata	RLG00000004298
rosa_multiflora	Rmu_ssc0000002.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262410
rosa_rugosa	Rorug07G0007400
rosa_samantha	Rh7AG132500 Rh7BG133400 Rh7CG136500 Rh7DG134400
rosa_wichuraiana	Rw7G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	97, 817
AciI	CCGC	3 cut(s)	222, 792, 978
AclWI	GGATC	2 cut(s)	1166, 1214
AcsI	RAATTY	2 cut(s)	233, 1291
AcuI	CTGAAG	2 cut(s)	155, 1037
AcvI	CACGTG	1 cut(s)	1276
AfaI	GTAC	5 cut(s)	77, 226, 392, 452, 917
AfiI	CCNNNNNNNGG	3 cut(s)	97, 192, 817
AflIII	ACRYGT	2 cut(s)	447, 1273
AgsI	TTSAA	6 cut(s)	149, 367, 853, 953, 1123, 1216
AjnI	CCWGG	5 cut(s)	289, 724, 1151, 1174, 1222
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	5 cut(s)	341, 513, 594, 1161, 1310
AluI	AGCT	5 cut(s)	341, 513, 594, 1161, 1310
Alw21I	GWGCWC	2 cut(s)	328, 758
Alw26I	GTCTC	2 cut(s)	116, 962
Alw44I	GTGCAC	1 cut(s)	754
AlwI	GGATC	2 cut(s)	1166, 1214
AoxI	GGCC	1 cut(s)	287
ApaLI	GTGCAC	1 cut(s)	754
ApeKI	GCWGC	3 cut(s)	338, 355, 513
ApoI	RAATTY	2 cut(s)	233, 1291
ArsI	GACNNNNNNTTYG	4 cut(s)	362, 394, 764, 796
AspLEI	GCGC	1 cut(s)	969
AsuHPI	GGTGA	3 cut(s)	32, 46, 61
BaeGI	GKGCMC	1 cut(s)	758
BbrPI	CACGTG	1 cut(s)	1276
BbsI	GAAGAC	1 cut(s)	930
Bbv12I	GWGCWC	2 cut(s)	328, 758
BbvI	GCAGC	3 cut(s)	342, 350, 500
BccI	CCATC	2 cut(s)	149, 789
BciT130I	CCWGG	5 cut(s)	291, 726, 1153, 1176, 1224
BcoDI	GTCTC	2 cut(s)	116, 962
BfaI	CTAG	2 cut(s)	789, 1019
BisI	GCNGC	4 cut(s)	339, 356, 514, 978
BlsI	GCNGC	4 cut(s)	340, 357, 515, 979
Bme1390I	CCNGG	5 cut(s)	291, 726, 1153, 1176, 1224
BmrFI	CCNGG	5 cut(s)	291, 726, 1153, 1176, 1224
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	744
Bsa29I	ATCGAT	1 cut(s)	526
BsaAI	YACGTR	1 cut(s)	1276
BsaI	GGTCTC	2 cut(s)	116, 962
BsaJI	CCNNGG	2 cut(s)	290, 1223
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 192, 817
Bse1I	ACTGG	4 cut(s)	112, 377, 851, 1292
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	5 cut(s)	291, 726, 1153, 1176, 1224
BseCI	ATCGAT	1 cut(s)	526
BseDI	CCNNGG	2 cut(s)	290, 1223
BseGI	GGATG	2 cut(s)	800, 1272
BseLI	CCNNNNNNNGG	3 cut(s)	97, 192, 817
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	3 cut(s)	291, 531, 1121
BseNI	ACTGG	4 cut(s)	112, 377, 851, 1292
BseRI	GAGGAG	5 cut(s)	317, 320, 323, 326, 552
BseSI	GKGCMC	1 cut(s)	758
BseXI	GCAGC	3 cut(s)	342, 350, 500
BseYI	CCCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	1263
BshFI	GGCC	1 cut(s)	289
BshVI	ATCGAT	1 cut(s)	526
BsiHKAI	GWGCWC	2 cut(s)	328, 758
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	3 cut(s)	97, 192, 817
BsmAI	GTCTC	2 cut(s)	116, 962
BsmFI	GGGAC	1 cut(s)	908
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	2 cut(s)	116, 962
Bsp1286I	GDGCHC	2 cut(s)	328, 758
Bsp143I	GATC	3 cut(s)	241, 1171, 1219
BspACI	CCGC	3 cut(s)	222, 792, 978
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	3 cut(s)	292, 530, 1120
BspDI	ATCGAT	1 cut(s)	526
BspPI	GGATC	2 cut(s)	1166, 1214
BspQI	GCTCTTC	1 cut(s)	671
BspTNI	GGTCTC	2 cut(s)	116, 962
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	4 cut(s)	112, 377, 851, 1292
BssECI	CCNNGG	2 cut(s)	290, 1223
BssMI	GATC	3 cut(s)	241, 1171, 1219
Bst2UI	CCWGG	5 cut(s)	291, 726, 1153, 1176, 1224
Bst4CI	ACNGT	3 cut(s)	59, 265, 624
Bst6I	CTCTTC	3 cut(s)	242, 570, 671
BstBAI	YACGTR	1 cut(s)	1276
BstC8I	GCNNGC	3 cut(s)	133, 161, 965
BstDEI	CTNAG	5 cut(s)	300, 517, 909, 1107, 1359
BstF5I	GGATG	2 cut(s)	800, 1272
BstHHI	GCGC	1 cut(s)	969
BstKTI	GATC	3 cut(s)	244, 1174, 1222
BstMAI	GTCTC	2 cut(s)	116, 962
BstMBI	GATC	3 cut(s)	241, 1171, 1219
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 634
BstNI	CCWGG	5 cut(s)	291, 726, 1153, 1176, 1224
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	5 cut(s)	289, 724, 1151, 1174, 1222
BstSLI	GKGCMC	1 cut(s)	758
BstV1I	GCAGC	3 cut(s)	342, 350, 500
BstV2I	GAAGAC	1 cut(s)	930
BstX2I	RGATCY	2 cut(s)	1171, 1219
BstYI	RGATCY	2 cut(s)	1171, 1219
Bsu15I	ATCGAT	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	289
BsuTUI	ATCGAT	1 cut(s)	526
BtsCI	GGATG	2 cut(s)	800, 1272
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	3 cut(s)	64, 688, 1367
Cac8I	GCNNGC	3 cut(s)	133, 161, 965
CfoI	GCGC	1 cut(s)	969
ClaI	ATCGAT	1 cut(s)	526
CseI	GACGC	1 cut(s)	1137
Csp6I	GTAC	5 cut(s)	76, 225, 391, 451, 916
CviAII	CATG	8 cut(s)	79, 115, 448, 538, 555, 569, 991, 1184
CviQI	GTAC	5 cut(s)	76, 225, 391, 451, 916
DdeI	CTNAG	5 cut(s)	300, 517, 909, 1107, 1359
DpnI	GATC	3 cut(s)	243, 1173, 1221
DpnII	GATC	3 cut(s)	241, 1171, 1219
Eam1104I	CTCTTC	3 cut(s)	242, 570, 671
EarI	CTCTTC	3 cut(s)	242, 570, 671
Eco31I	GGTCTC	2 cut(s)	116, 962
Eco57I	CTGAAG	2 cut(s)	155, 1037
Eco72I	CACGTG	1 cut(s)	1276
EcoRII	CCWGG	5 cut(s)	289, 724, 1151, 1174, 1222
FaeI	CATG	8 cut(s)	82, 118, 451, 541, 558, 572, 994, 1187
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	8 cut(s)	78, 114, 447, 537, 554, 568, 990, 1183
FauNDI	CATATG	1 cut(s)	1261
Fnu4HI	GCNGC	4 cut(s)	339, 356, 514, 978
FokI	GGATG	2 cut(s)	807, 1279
Fsp4HI	GCNGC	4 cut(s)	339, 356, 514, 978
FspBI	CTAG	2 cut(s)	789, 1019
GlaI	GCGC	1 cut(s)	968
GluI	GCNGC	4 cut(s)	339, 356, 514, 978
GsaI	CCCAGC	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	289
HgaI	GACGC	1 cut(s)	1137
HhaI	GCGC	1 cut(s)	969
Hin1II	CATG	8 cut(s)	82, 118, 451, 541, 558, 572, 994, 1187
Hin6I	GCGC	1 cut(s)	967
HinP1I	GCGC	1 cut(s)	967
HindIII	AAGCTT	1 cut(s)	1308
HinfI	GANTC	7 cut(s)	296, 331, 559, 905, 1045, 1078, 1084
HphI	GGTGA	3 cut(s)	32, 46, 61
Hpy166II	GTNNAC	2 cut(s)	535, 756
Hpy188I	TCNGA	9 cut(s)	246, 301, 330, 420, 496, 520, 1083, 1089, 1140
Hpy188III	TCNNGA	3 cut(s)	149, 761, 1009
Hpy8I	GTNNAC	2 cut(s)	535, 756
HpyAV	CCTTC	6 cut(s)	37, 361, 379, 651, 947, 1321
HpyCH4III	ACNGT	3 cut(s)	59, 265, 624
HpyCH4IV	ACGT	4 cut(s)	868, 1024, 1275, 1338
HpyCH4V	TGCA	8 cut(s)	135, 215, 472, 734, 756, 1037, 1168, 1244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 634
HpyF3I	CTNAG	5 cut(s)	300, 517, 909, 1107, 1359
HpySE526I	ACGT	4 cut(s)	868, 1024, 1275, 1338
Hsp92II	CATG	8 cut(s)	82, 118, 451, 541, 558, 572, 994, 1187
HspAI	GCGC	1 cut(s)	967
Kzo9I	GATC	3 cut(s)	241, 1171, 1219
LguI	GCTCTTC	1 cut(s)	671
LmnI	GCTCC	4 cut(s)	331, 345, 542, 1166
Lsp1109I	GCAGC	3 cut(s)	342, 350, 500
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	2 cut(s)	789, 1019
MaeII	ACGT	4 cut(s)	868, 1024, 1275, 1338
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	3 cut(s)	243, 1173, 1221
MboI	GATC	3 cut(s)	241, 1171, 1219
MboII	GAAGA	8 cut(s)	97, 161, 259, 557, 688, 833, 935, 1081
MflI	RGATCY	2 cut(s)	1171, 1219
MhlI	GDGCHC	2 cut(s)	328, 758
MluCI	AATT	6 cut(s)	233, 814, 1134, 1143, 1291, 1354
MlyI	GAGTC	4 cut(s)	340, 553, 914, 1078
MmeI	TCCRAC	2 cut(s)	247, 729
MseI	TTAA	2 cut(s)	930, 999
MslI	CAYNNNNRTG	2 cut(s)	573, 989
MspA1I	CMGCKG	1 cut(s)	341
MspR9I	CCNGG	5 cut(s)	291, 726, 1153, 1176, 1224
MvaI	CCWGG	5 cut(s)	291, 726, 1153, 1176, 1224
MwoI	GCNNNNNNNGC	2 cut(s)	100, 634
NdeI	CATATG	1 cut(s)	1261
NdeII	GATC	3 cut(s)	241, 1171, 1219
NlaIII	CATG	8 cut(s)	82, 118, 451, 541, 558, 572, 994, 1187
NspI	RCATGY	1 cut(s)	451
PciI	ACATGT	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	671
PfeI	GAWTC	3 cut(s)	296, 1045, 1078
PflMI	CCANNNNNTGG	2 cut(s)	97, 817
PfoI	TCCNGGA	2 cut(s)	1151, 1174
PkrI	GCNGC	4 cut(s)	340, 357, 515, 979
PleI	GAGTC	4 cut(s)	339, 553, 913, 1078
PmaCI	CACGTG	1 cut(s)	1276
PmlI	CACGTG	1 cut(s)	1276
PpsI	GAGTC	4 cut(s)	339, 553, 913, 1078
Ppu21I	YACGTR	1 cut(s)	1276
PscI	ACATGT	1 cut(s)	447
Psp6I	CCWGG	5 cut(s)	289, 724, 1151, 1174, 1222
PspCI	CACGTG	1 cut(s)	1276
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	5 cut(s)	289, 724, 1151, 1174, 1222
PsuI	RGATCY	2 cut(s)	1171, 1219
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	5 cut(s)	77, 226, 392, 452, 917
RsaNI	GTAC	5 cut(s)	76, 225, 391, 451, 916
RseI	CAYNNNNRTG	2 cut(s)	573, 989
SapI	GCTCTTC	1 cut(s)	671
SaqAI	TTAA	2 cut(s)	930, 999
SatI	GCNGC	4 cut(s)	339, 356, 514, 978
Sau3AI	GATC	3 cut(s)	241, 1171, 1219
SchI	GAGTC	4 cut(s)	340, 553, 914, 1078
ScrFI	CCNGG	5 cut(s)	291, 726, 1153, 1176, 1224
SduI	GDGCHC	2 cut(s)	328, 758
SfaNI	GCATC	1 cut(s)	342
SmiMI	CAYNNNNRTG	2 cut(s)	573, 989
SmlI	CTYRAG	1 cut(s)	759
SmoI	CTYRAG	1 cut(s)	759
Sse9I	AATT	6 cut(s)	233, 814, 1134, 1143, 1291, 1354
SsiI	CCGC	3 cut(s)	222, 792, 978
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	2 cut(s)	789, 1019
StyD4I	CCNGG	5 cut(s)	289, 724, 1151, 1174, 1222
TaaI	ACNGT	3 cut(s)	59, 265, 624
TaiI	ACGT	4 cut(s)	871, 1027, 1278, 1341
TaqI	TCGA	3 cut(s)	526, 1048, 1296
TasI	AATT	6 cut(s)	233, 814, 1134, 1143, 1291, 1354
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	1 cut(s)	980
TfiI	GAWTC	3 cut(s)	296, 1045, 1078
Tru1I	TTAA	2 cut(s)	930, 999
Tru9I	TTAA	2 cut(s)	930, 999
TscAI	CASTG	3 cut(s)	64, 688, 1367
TseI	GCWGC	3 cut(s)	338, 355, 513
TspDTI	ATGAA	5 cut(s)	557, 689, 1007, 1219, 1340
TspRI	CASTG	3 cut(s)	64, 688, 1367
Van91I	CCANNNNNTGG	2 cut(s)	97, 817
VneI	GTGCAC	1 cut(s)	754
XapI	RAATTY	2 cut(s)	233, 1291
XceI	RCATGY	1 cut(s)	451
XspI	CTAG	2 cut(s)	789, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.