Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008370

Physical Location & Seq

Genomic Coordinates Forward (+)

10623640 .. 10627890

Gene Structure 4251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG132500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGTGTGTGTCGGCCCAACCCGGCCCGGCCCAATCTCCTCCAGAAGACTTATCATCACTAAATTCAATTACAGGGGGAAAGAAAATATGGGGATCAAAATAGGGGGTGAAATAGAGAGGGTGAATGGGAAGGAGATGAGTTACAGTGAGTTTGTGGAGAGGTACATGGAGAAGAACCAGCCTGTGGTGCTGACAGGTCTCATGGATGATTGGAGGGCTTGTAGAGATTGGGTCACTGATGATGGCAACCCCAATCTTCAATTTTTCGCTACCCATTTTGGAAAATCCAAAGTCCAGGTTGCAGATTGCGGTACTAGAGAATACACGGATCAGAAGAGATTAGAAATGACTGTTGGAGAATTTGTTGAGCAATGGCGTGGGGATTCTGTGCAAGAGCATTGTACTGCTCCAAGTCAGGCAGGTGGGAGCAAGATGTTGCTATATTTGAAGGACTGGCATTTTGTAAAGGAGTACCCAGAATATACAGCATACACAACTCCAATGTTCTTTTGTGATGATTGGCTTAACACATATCTTGACAATTATCGTATGCATAACGACCCCAACATTTACTCTGAAAATAATGACATAAGCTGCTCTGACTATCGATTTGTTTACATGGGAGCAAAAGGCACATGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGCTGGTCAGCAAATGTGTGTGGAAAAAAACAGTGGCTTTTCCTGTCTCCTTCTCAAAGTCATCTGGTGTTTGACAGGAATATGAAAAACAGTGTATATAATATCTTTGATGATGTCAGTGAAACAAAATTTCCTGGTTTTGCAAAGGCTATCTGGTTTGAGTGCACTCAAGAGCAAAATGACATTATCTTTGTGCCTAGTGGATGGTATCATCAAGTCCATAATTTGGAAGATACCATTTCAATAAACCACAACTGGTTCAATGCTAATAATCTTCGTTGGGTGTGGGATTTGCTTTTGAGGGACTACGATGAGGCTAAGGAGTACATAGAAGACATTAAGGAAATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAACCTTGCCGCTAATACAGTTTTGGGAAAAACATATGGGACGATACACATGCAACAAAACTGGAATTTTGATACAAAGAAAGCTTGGATAGATGATATGAAAGACTTGGACGTTATAGGAACTTTTAATTCTCAGGTCTGTACTCCCAAAGATCTTGTAATGTTTATACAGCATGCTCTTGCAGAAAGCAATGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 JmjC

Protein Analysis

416

Amino Acids

48.51

Weight (kDa)

5.16

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	50 - 312	1.7e-24	Cupin-like domain
JmjC	PF02373	205 - 310	1.1e-15	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63080
fragaria_vesca	FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750
malus_domestica	MD14G1175900.v1.1
prunus_persica	Prupe.5G169900_v2.0.a1
pyrus_communis	pycom14g08050 pycom14g14700
rosa_chinensis	RchiOBHm_Chr7g0193061
rosa_laevigata	RLG00000004298
rosa_multiflora	Rmu_ssc0000002.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262410
rosa_rugosa	Rorug07G0007400
rosa_samantha	Rh7AG132500 Rh7BG133400 Rh7CG136500 Rh7DG134400
rosa_wichuraiana	Rw7G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	410
Acc36I	ACCTGC	1 cut(s)	410
AccB7I	CCANNNNNTGG	2 cut(s)	184, 898
AciI	CCGC	2 cut(s)	309, 1059
AclWI	GGATC	2 cut(s)	101, 336
AcsI	RAATTY	4 cut(s)	62, 359, 800, 1114
AfaI	GTAC	6 cut(s)	164, 313, 403, 473, 998, 1192
AfiI	CCNNNNNNNGG	2 cut(s)	184, 898
AgsI	TTSAA	6 cut(s)	67, 260, 448, 915, 934, 1034
AjnI	CCWGG	2 cut(s)	294, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	3 cut(s)	594, 675, 1133
AluI	AGCT	3 cut(s)	594, 675, 1133
Alw21I	GWGCWC	1 cut(s)	839
Alw26I	GTCTC	3 cut(s)	203, 723, 1043
Alw44I	GTGCAC	1 cut(s)	835
AlwI	GGATC	2 cut(s)	101, 336
AoxI	GGCC	3 cut(s)	13, 23, 28
ApaLI	GTGCAC	1 cut(s)	835
ApeKI	GCWGC	1 cut(s)	594
ApoI	RAATTY	4 cut(s)	62, 359, 800, 1114
ArsI	GACNNNNNNTTYG	6 cut(s)	443, 475, 593, 625, 845, 877
AspLEI	GCGC	1 cut(s)	1050
AspS9I	GGNCC	3 cut(s)	14, 24, 29
AsuC2I	CCSGG	2 cut(s)	22, 27
AsuHPI	GGTGA	2 cut(s)	119, 133
BaeGI	GKGCMC	1 cut(s)	839
BbsI	GAAGAC	2 cut(s)	52, 1011
Bbv12I	GWGCWC	1 cut(s)	839
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	2 cut(s)	236, 870
BcgI	CGANNNNNNTGC	2 cut(s)	1081, 1115
BciT130I	CCWGG	2 cut(s)	296, 807
BcnI	CCSGG	2 cut(s)	22, 27
BcoDI	GTCTC	3 cut(s)	203, 723, 1043
BfaI	CTAG	2 cut(s)	315, 870
BfuAI	ACCTGC	1 cut(s)	410
BglII	AGATCT	1 cut(s)	1201
BisI	GCNGC	2 cut(s)	595, 1059
BlsI	GCNGC	2 cut(s)	596, 1060
Bme1390I	CCNGG	4 cut(s)	22, 27, 296, 807
BmgT120I	GGNCC	3 cut(s)	14, 24, 29
BmrFI	CCNGG	4 cut(s)	22, 27, 296, 807
BpiI	GAAGAC	2 cut(s)	52, 1011
BpmI	CTGGAG	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	990
BpuEI	CTTGAG	1 cut(s)	825
BpuMI	CCSGG	2 cut(s)	22, 27
Bsa29I	ATCGAT	1 cut(s)	607
BsaI	GGTCTC	2 cut(s)	203, 1043
BsaXI	ACNNNNNCTCC	6 cut(s)	205, 235, 348, 378, 625, 655
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 898
Bse1I	ACTGG	3 cut(s)	458, 932, 1115
Bse3DI	GCAATG	2 cut(s)	377, 1246
BseBI	CCWGG	2 cut(s)	296, 807
BseCI	ATCGAT	1 cut(s)	607
BseGI	GGATG	2 cut(s)	211, 881
BseLI	CCNNNNNNNGG	2 cut(s)	184, 898
BseMI	GCAATG	2 cut(s)	377, 1246
BseMII	CTCAG	1 cut(s)	1196
BseNI	ACTGG	3 cut(s)	458, 932, 1115
BseRI	GAGGAG	2 cut(s)	28, 633
BseSI	GKGCMC	1 cut(s)	839
BseXI	GCAGC	1 cut(s)	581
BshFI	GGCC	3 cut(s)	15, 25, 30
BshVI	ATCGAT	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	839
BsiSI	CCGG	2 cut(s)	22, 27
BslFI	GGGAC	2 cut(s)	989, 1102
BslI	CCNNNNNNNGG	2 cut(s)	184, 898
BsmAI	GTCTC	3 cut(s)	203, 723, 1043
BsmFI	GGGAC	2 cut(s)	989, 1102
BsnI	GGCC	3 cut(s)	15, 25, 30
Bso31I	GGTCTC	2 cut(s)	203, 1043
Bsp1286I	GDGCHC	1 cut(s)	839
Bsp143I	GATC	3 cut(s)	93, 328, 1201
BspACI	CCGC	2 cut(s)	309, 1059
BspANI	GGCC	3 cut(s)	15, 25, 30
BspCNI	CTCAG	1 cut(s)	1195
BspDI	ATCGAT	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	410
BspPI	GGATC	2 cut(s)	101, 336
BspTNI	GGTCTC	2 cut(s)	203, 1043
BsrDI	GCAATG	2 cut(s)	377, 1246
BsrI	ACTGG	3 cut(s)	458, 932, 1115
BssMI	GATC	3 cut(s)	93, 328, 1201
Bst2UI	CCWGG	2 cut(s)	296, 807
Bst4CI	ACNGT	5 cut(s)	146, 352, 705, 764, 1069
Bst6I	CTCTTC	2 cut(s)	329, 651
BstC8I	GCNNGC	2 cut(s)	1046, 1224
BstDEI	CTNAG	2 cut(s)	990, 1182
BstF5I	GGATG	2 cut(s)	211, 881
BstHHI	GCGC	1 cut(s)	1050
BstKTI	GATC	3 cut(s)	96, 331, 1204
BstMAI	GTCTC	3 cut(s)	203, 723, 1043
BstMBI	GATC	3 cut(s)	93, 328, 1201
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	2 cut(s)	296, 807
BstNSI	RCATGY	2 cut(s)	1102, 1226
BstSCI	CCNGG	4 cut(s)	20, 25, 294, 805
BstSLI	GKGCMC	1 cut(s)	839
BstV1I	GCAGC	1 cut(s)	581
BstV2I	GAAGAC	2 cut(s)	52, 1011
BstX2I	RGATCY	1 cut(s)	1201
BstYI	RGATCY	1 cut(s)	1201
Bsu15I	ATCGAT	1 cut(s)	607
BsuRI	GGCC	3 cut(s)	15, 25, 30
BsuTUI	ATCGAT	1 cut(s)	607
BtsCI	GGATG	2 cut(s)	211, 881
BtsIMutI	CAGTG	5 cut(s)	151, 234, 710, 769, 796
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	2 cut(s)	1046, 1224
CfoI	GCGC	1 cut(s)	1050
Cfr13I	GGNCC	3 cut(s)	14, 24, 29
ClaI	ATCGAT	1 cut(s)	607
Csp6I	GTAC	6 cut(s)	163, 312, 402, 472, 997, 1191
CviAII	CATG	7 cut(s)	166, 202, 619, 636, 650, 1099, 1223
CviQI	GTAC	6 cut(s)	163, 312, 402, 472, 997, 1191
DdeI	CTNAG	2 cut(s)	990, 1182
DpnI	GATC	3 cut(s)	95, 330, 1203
DpnII	GATC	3 cut(s)	93, 328, 1201
Eam1104I	CTCTTC	2 cut(s)	329, 651
EarI	CTCTTC	2 cut(s)	329, 651
Eco31I	GGTCTC	2 cut(s)	203, 1043
EcoRII	CCWGG	2 cut(s)	294, 805
EcoT22I	ATGCAT	1 cut(s)	555
FaeI	CATG	7 cut(s)	169, 205, 622, 639, 653, 1102, 1226
FaqI	GGGAC	2 cut(s)	989, 1102
FatI	CATG	7 cut(s)	165, 201, 618, 635, 649, 1098, 1222
FauNDI	CATATG	1 cut(s)	1084
Fnu4HI	GCNGC	2 cut(s)	595, 1059
FokI	GGATG	2 cut(s)	218, 888
Fsp4HI	GCNGC	2 cut(s)	595, 1059
FspBI	CTAG	2 cut(s)	315, 870
GlaI	GCGC	1 cut(s)	1049
GluI	GCNGC	2 cut(s)	595, 1059
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	3 cut(s)	15, 25, 30
HapII	CCGG	2 cut(s)	22, 27
HhaI	GCGC	1 cut(s)	1050
Hin1II	CATG	7 cut(s)	169, 205, 622, 639, 653, 1102, 1226
Hin6I	GCGC	1 cut(s)	1048
HinP1I	GCGC	1 cut(s)	1048
HindIII	AAGCTT	1 cut(s)	1131
HinfI	GANTC	2 cut(s)	383, 640
HpaII	CCGG	2 cut(s)	22, 27
HphI	GGTGA	2 cut(s)	119, 133
Hpy166II	GTNNAC	2 cut(s)	616, 837
Hpy188I	TCNGA	3 cut(s)	333, 577, 601
Hpy188III	TCNNGA	3 cut(s)	42, 536, 842
Hpy8I	GTNNAC	2 cut(s)	616, 837
HpyAV	CCTTC	4 cut(s)	124, 442, 732, 1028
HpyCH4III	ACNGT	5 cut(s)	146, 352, 705, 764, 1069
HpyCH4IV	ACGT	1 cut(s)	1161
HpyCH4V	TGCA	7 cut(s)	302, 391, 553, 815, 837, 1102, 1232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	2 cut(s)	990, 1182
HpySE526I	ACGT	1 cut(s)	1161
Hsp92II	CATG	7 cut(s)	169, 205, 622, 639, 653, 1102, 1226
HspAI	GCGC	1 cut(s)	1048
Kzo9I	GATC	3 cut(s)	93, 328, 1201
LmnI	GCTCC	3 cut(s)	412, 426, 623
Lsp1109I	GCAGC	1 cut(s)	581
MaeI	CTAG	2 cut(s)	315, 870
MaeII	ACGT	1 cut(s)	1161
MaeIII	GTNAC	2 cut(s)	140, 232
MalI	GATC	3 cut(s)	95, 330, 1203
MboI	GATC	3 cut(s)	93, 328, 1201
MboII	GAAGA	8 cut(s)	57, 184, 248, 346, 638, 914, 938, 1016
MflI	RGATCY	1 cut(s)	1201
MhlI	GDGCHC	1 cut(s)	839
MluCI	AATT	9 cut(s)	62, 67, 260, 359, 541, 800, 895, 1114, 1177
MlyI	GAGTC	1 cut(s)	634
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	7 cut(s)	49, 111, 153, 207, 654, 966, 979
Mph1103I	ATGCAT	1 cut(s)	555
MseI	TTAA	3 cut(s)	525, 1011, 1176
MslI	CAYNNNNRTG	1 cut(s)	654
MspI	CCGG	2 cut(s)	22, 27
MspR9I	CCNGG	4 cut(s)	22, 27, 296, 807
MvaI	CCWGG	2 cut(s)	296, 807
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	2 cut(s)	22, 27
NdeI	CATATG	1 cut(s)	1084
NdeII	GATC	3 cut(s)	93, 328, 1201
NlaIII	CATG	7 cut(s)	169, 205, 622, 639, 653, 1102, 1226
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	2 cut(s)	1102, 1226
PaeI	GCATGC	1 cut(s)	1226
PaqCI	CACCTGC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	2 cut(s)	184, 898
PkrI	GCNGC	2 cut(s)	596, 1060
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Psp6I	CCWGG	2 cut(s)	294, 805
PspGI	CCWGG	2 cut(s)	294, 805
PspPI	GGNCC	3 cut(s)	14, 24, 29
PsuI	RGATCY	1 cut(s)	1201
RsaI	GTAC	6 cut(s)	164, 313, 403, 473, 998, 1192
RsaNI	GTAC	6 cut(s)	163, 312, 402, 472, 997, 1191
RseI	CAYNNNNRTG	1 cut(s)	654
SaqAI	TTAA	3 cut(s)	525, 1011, 1176
SatI	GCNGC	2 cut(s)	595, 1059
Sau3AI	GATC	3 cut(s)	93, 328, 1201
Sau96I	GGNCC	3 cut(s)	14, 24, 29
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	4 cut(s)	22, 27, 296, 807
SduI	GDGCHC	1 cut(s)	839
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	840
SmoI	CTYRAG	1 cut(s)	840
SphI	GCATGC	1 cut(s)	1226
Sse9I	AATT	9 cut(s)	62, 67, 260, 359, 541, 800, 895, 1114, 1177
SsiI	CCGC	2 cut(s)	309, 1059
SspMI	CTAG	2 cut(s)	315, 870
StyD4I	CCNGG	4 cut(s)	20, 25, 294, 805
TaaI	ACNGT	5 cut(s)	146, 352, 705, 764, 1069
TaiI	ACGT	1 cut(s)	1164
TaqI	TCGA	1 cut(s)	607
TasI	AATT	9 cut(s)	62, 67, 260, 359, 541, 800, 895, 1114, 1177
TatI	WGTACW	3 cut(s)	401, 996, 1190
TauI	GCSGC	1 cut(s)	1061
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	525, 1011, 1176
Tru9I	TTAA	3 cut(s)	525, 1011, 1176
TscAI	CASTG	5 cut(s)	151, 241, 710, 769, 796
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	594
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	3 cut(s)	638, 770, 1163
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	5 cut(s)	151, 241, 710, 769, 796
Van91I	CCANNNNNTGG	2 cut(s)	184, 898
VneI	GTGCAC	1 cut(s)	835
XapI	RAATTY	4 cut(s)	62, 359, 800, 1114
XceI	RCATGY	2 cut(s)	1102, 1226
XspI	CTAG	2 cut(s)	315, 870
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.