Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008370

Physical Location & Seq

Genomic Coordinates Forward (+)

26919946 .. 26923646

Gene Structure 3701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1175900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGGTATTCAAATTGGGGGGCAAATAGAGAAGGTGAGCGGGAAAAAACTGGGGTACAATGAGTTCGTGGAGAGGTACATGGAGAAAAACCAGCCTGTGGTGCTCACAGGTCTCATGGACGATTGGAGGGCTTGCAGAGATTGGGTCACCGACGACGGCCAGCCAAATCTTCAATTTTTCGCTACCCATTTCGGAAAATCCAAAGTTCAGGTTGCAGATTGTGGTACTAGAGAATTCACAGATCAGAAGAGAATGGAAATGACTGTTGCGGACTTTGTTGAGCAATGGCTCGGGGACCCCATTCAGGAGCATAGTAATGCTTCAAGTCATGAAGCTATGAGCAAGGAGTTGCTATATTTGAAGGACTGGCATTTTGTTAAGGAGTACCCAGAATACAAAGCCTACACAACTCCGGTGCTCTTTTGTGATGATTGGCTCAACATGTATCTTGACAATTATCACATGCATAATGATCCCAACATTTACTCAGAAAATAACGAAATTAGTTGCTCTGATTATCGTTTTGTTTACATGGGAGCAAAAGGCACTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGCTGGTCAGCGAATGTGTGTGGCAAAAAACGGTGGCTTTTCCTCTCTCCCTCTCAAAGTCATCTTGTGTTTGGCAGGAATATGAAAAGCTGTGTATATAATATCTTTGATGATGTTAGTGAAACCAATGTTCCTGGTTTTGCAAAGGCTATCTGGTTGGAGTCCATTCAAGAACCAAATGAGATTATCTTTGTGCCTAGCGGATGGTATCATCAAGTTCATAATTTGGAAGATACAATTTCCATAAACCACAACTGGTTCAATGCTTATAATATTCGTTGGGTGTGGGATTTGCTTTTGAGGGACTACTACGAAGCTAAGGAGTACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAACGAAACCTTGCCGCTAATACAGGCATGAACTTTAGTGATTTCTTAATCTTCTTAGCACGGTTCTCTCTGGCCAACTTGATCCAACTTCATTATTTTGCTAGAAAGAATGGAAATCACACTCGGCATTCATCCCCAATTGCTCAGAATTTCACTTTCAACCTTGCATCAATTCAAAAAATTGCATCGAATATAAAATCTATGGAAGATCAGACAGGAAGTCATGGATTTCATTTGGATTTCCGGGAAGCCTTAAATGATCCCAAGTTCTTTAAACTTTGTACTGTTTTGGGAAGACAATATGGGATGGTACACATGGAACCAGACTGGAATTGCGATACAAAGAAAGCTTGGTTAGATGATATGAGGTACATGGAAATTCTAGGAACTTGTAGCTCTGAGGTCTCTACTGCCAGTGATCTTGTTAAATTTGTAGAGCATGCTGTTGCAGAATTCATGGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 JmjC

Protein Analysis

475

Amino Acids

55.23

Weight (kDa)

5.32

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	21 - 283	3.4e-22	Cupin-like domain
JmjC	PF02373	176 - 281	2e-14	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63080
fragaria_vesca	FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750
malus_domestica	MD14G1175900.v1.1
prunus_persica	Prupe.5G169900_v2.0.a1
pyrus_communis	pycom14g08050 pycom14g14700
rosa_chinensis	RchiOBHm_Chr7g0193061
rosa_laevigata	RLG00000004298
rosa_multiflora	Rmu_ssc0000002.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262410
rosa_rugosa	Rorug07G0007400
rosa_samantha	Rh7AG132500 Rh7BG133400 Rh7CG136500 Rh7DG134400
rosa_wichuraiana	Rw7G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	4 cut(s)	39, 269, 786, 972
AclWI	GGATC	3 cut(s)	467, 1033, 1211
AcoI	YGGCCR	2 cut(s)	157, 1029
AcsI	RAATTY	5 cut(s)	233, 1105, 1335, 1385, 1409
AfaI	GTAC	8 cut(s)	56, 77, 226, 386, 911, 1240, 1269, 1328
AfiI	CCNNNNNNNGG	2 cut(s)	97, 304
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	9 cut(s)	11, 173, 324, 361, 755, 847, 947, 1117, 1133
AhdI	GACNNNNNGTC	1 cut(s)	1176
AjnI	CCWGG	1 cut(s)	718
AluBI	AGCT	6 cut(s)	335, 588, 675, 902, 1307, 1353
AluI	AGCT	6 cut(s)	335, 588, 675, 902, 1307, 1353
Alw21I	GWGCWC	2 cut(s)	105, 420
Alw26I	GTCTC	3 cut(s)	116, 956, 1366
AlwI	GGATC	3 cut(s)	467, 1033, 1211
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	2 cut(s)	157, 1029
ApoI	RAATTY	5 cut(s)	233, 1105, 1335, 1385, 1409
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	1202
AsuHPI	GGTGA	2 cut(s)	46, 139
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	1031
BbsI	GAAGAC	2 cut(s)	924, 1258
Bbv12I	GWGCWC	2 cut(s)	105, 420
BccI	CCATC	2 cut(s)	783, 1258
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	720
BcnI	CCSGG	1 cut(s)	1202
BcoDI	GTCTC	3 cut(s)	116, 956, 1366
BfaI	CTAG	4 cut(s)	228, 783, 1059, 1340
BisI	GCNGC	1 cut(s)	972
BlsI	GCNGC	1 cut(s)	973
Bme1390I	CCNGG	2 cut(s)	720, 1202
Bme18I	GGWCC	1 cut(s)	295
BmeRI	GACNNNNNGTC	1 cut(s)	1176
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	3 cut(s)	296, 297, 1278
BmrFI	CCNGG	2 cut(s)	720, 1202
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	1133, 1151
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	2 cut(s)	924, 1258
Bpu10I	CCTNAGC	1 cut(s)	903
BpuMI	CCSGG	1 cut(s)	1202
BsaI	GGTCTC	3 cut(s)	116, 956, 1366
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 304
Bse1I	ACTGG	5 cut(s)	54, 371, 845, 1289, 1371
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	720
BseGI	GGATG	3 cut(s)	794, 1088, 1269
BseLI	CCNNNNNNNGG	2 cut(s)	97, 304
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	3 cut(s)	501, 1115, 1347
BseNI	ACTGG	5 cut(s)	54, 371, 845, 1289, 1371
BseRI	GAGGAG	1 cut(s)	546
BshFI	GGCC	2 cut(s)	159, 1031
BsiHKAI	GWGCWC	2 cut(s)	105, 420
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	2 cut(s)	413, 1201
BslFI	GGGAC	2 cut(s)	308, 902
BslI	CCNNNNNNNGG	2 cut(s)	97, 304
BsmAI	GTCTC	3 cut(s)	116, 956, 1366
BsmFI	GGGAC	2 cut(s)	308, 902
BsmI	GAATGC	1 cut(s)	1084
BsnI	GGCC	2 cut(s)	159, 1031
Bso31I	GGTCTC	3 cut(s)	116, 956, 1366
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	105, 420
Bsp143I	GATC	6 cut(s)	241, 472, 1038, 1165, 1216, 1375
BspACI	CCGC	4 cut(s)	39, 269, 786, 972
BspANI	GGCC	2 cut(s)	159, 1031
BspCNI	CTCAG	3 cut(s)	500, 1114, 1348
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	3 cut(s)	296, 297, 1278
BspPI	GGATC	3 cut(s)	467, 1033, 1211
BspTNI	GGTCTC	3 cut(s)	116, 956, 1366
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	5 cut(s)	54, 371, 845, 1289, 1371
BssMI	GATC	6 cut(s)	241, 472, 1038, 1165, 1216, 1375
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	4 cut(s)	265, 618, 1020, 1243
Bst6I	CTCTTC	2 cut(s)	242, 564
BstC8I	GCNNGC	3 cut(s)	133, 161, 1398
BstDEI	CTNAG	5 cut(s)	487, 903, 1012, 1101, 1356
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	3 cut(s)	794, 1088, 1269
BstKTI	GATC	6 cut(s)	244, 475, 1041, 1168, 1219, 1378
BstMAI	GTCTC	3 cut(s)	116, 956, 1366
BstMBI	GATC	6 cut(s)	241, 472, 1038, 1165, 1216, 1375
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	3 cut(s)	445, 466, 1400
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	718, 1200
BstV2I	GAAGAC	2 cut(s)	924, 1258
BsuRI	GGCC	2 cut(s)	159, 1031
BtsCI	GGATG	3 cut(s)	794, 1088, 1269
BtsIMutI	CAGTG	1 cut(s)	1378
Cac8I	GCNNGC	3 cut(s)	133, 161, 1398
CciI	TCATGA	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	8 cut(s)	55, 76, 225, 385, 910, 1239, 1268, 1327
CviQI	GTAC	8 cut(s)	55, 76, 225, 385, 910, 1239, 1268, 1327
DdeI	CTNAG	5 cut(s)	487, 903, 1012, 1101, 1356
DpnI	GATC	6 cut(s)	243, 474, 1040, 1167, 1218, 1377
DpnII	GATC	6 cut(s)	241, 472, 1038, 1165, 1216, 1375
DraI	TTTAAA	1 cut(s)	1231
DriI	GACNNNNNGTC	1 cut(s)	1176
EaeI	YGGCCR	2 cut(s)	157, 1029
Eam1104I	CTCTTC	2 cut(s)	242, 564
Eam1105I	GACNNNNNGTC	1 cut(s)	1176
EarI	CTCTTC	2 cut(s)	242, 564
Eco31I	GGTCTC	3 cut(s)	116, 956, 1366
Eco47I	GGWCC	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	295
EcoO65I	GGTNACC	1 cut(s)	145
EcoRI	GAATTC	2 cut(s)	233, 1409
EcoRII	CCWGG	1 cut(s)	718
EcoT22I	ATGCAT	1 cut(s)	468
FaqI	GGGAC	2 cut(s)	308, 902
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	972
FokI	GGATG	3 cut(s)	801, 1075, 1276
Fsp4HI	GCNGC	1 cut(s)	972
FspBI	CTAG	4 cut(s)	228, 783, 1059, 1340
GluI	GCNGC	1 cut(s)	972
HaeIII	GGCC	2 cut(s)	159, 1031
HapII	CCGG	2 cut(s)	413, 1201
HindIII	AAGCTT	1 cut(s)	1305
HinfI	GANTC	2 cut(s)	553, 746
HpaII	CCGG	2 cut(s)	413, 1201
HphI	GGTGA	2 cut(s)	46, 139
Hpy166II	GTNNAC	2 cut(s)	529, 1270
Hpy188I	TCNGA	7 cut(s)	194, 246, 490, 514, 1104, 1170, 1357
Hpy188III	TCNNGA	4 cut(s)	305, 329, 449, 755
Hpy8I	GTNNAC	2 cut(s)	529, 1270
Hpy99I	CGWCG	2 cut(s)	155, 158
HpyAV	CCTTC	3 cut(s)	25, 355, 941
HpyCH4III	ACNGT	4 cut(s)	265, 618, 1020, 1243
HpyCH4V	TGCA	7 cut(s)	135, 215, 466, 728, 1124, 1142, 1406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	5 cut(s)	487, 903, 1012, 1101, 1356
KflI	GGGWCCC	1 cut(s)	295
Kzo9I	GATC	6 cut(s)	241, 472, 1038, 1165, 1216, 1375
LmnI	GCTCC	2 cut(s)	307, 536
LweI	GCATC	2 cut(s)	1133, 1151
MaeI	CTAG	4 cut(s)	228, 783, 1059, 1340
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	6 cut(s)	243, 474, 1040, 1167, 1218, 1377
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	6 cut(s)	241, 472, 1038, 1165, 1216, 1375
MboII	GAAGA	8 cut(s)	161, 259, 551, 827, 929, 1000, 1175, 1263
MfeI	CAATTG	1 cut(s)	1095
MhlI	GDGCHC	2 cut(s)	105, 420
MlsI	TGGCCA	1 cut(s)	1031
MluNI	TGGCCA	1 cut(s)	1031
MlyI	GAGTC	2 cut(s)	547, 755
MmeI	TCCRAC	2 cut(s)	723, 1066
MnlI	CCTC	8 cut(s)	66, 120, 567, 638, 646, 879, 1317, 1351
Mox20I	TGGCCA	1 cut(s)	1031
Mph1103I	ATGCAT	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	1031
MseI	TTAA	5 cut(s)	378, 1004, 1211, 1230, 1383
MslI	CAYNNNNRTG	2 cut(s)	315, 567
Msp20I	TGGCCA	1 cut(s)	1031
MspI	CCGG	2 cut(s)	413, 1201
MspR9I	CCNGG	2 cut(s)	720, 1202
MunI	CAATTG	1 cut(s)	1095
Mva1269I	GAATGC	1 cut(s)	1084
MvaI	CCWGG	1 cut(s)	720
MwoI	GCNNNNNNNGC	1 cut(s)	100
NciI	CCSGG	1 cut(s)	1202
NdeII	GATC	6 cut(s)	241, 472, 1038, 1165, 1216, 1375
NlaIV	GGNNCC	3 cut(s)	296, 297, 1278
NmeAIII	GCCGAG	1 cut(s)	1060
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	3 cut(s)	445, 466, 1400
PaeI	GCATGC	1 cut(s)	1400
PagI	TCATGA	1 cut(s)	328
PciI	ACATGT	1 cut(s)	441
PctI	GAATGC	1 cut(s)	1084
PflMI	CCANNNNNTGG	1 cut(s)	97
PfoI	TCCNGGA	1 cut(s)	1200
PkrI	GCNGC	1 cut(s)	973
PleI	GAGTC	2 cut(s)	547, 754
PpsI	GAGTC	2 cut(s)	547, 754
PpuMI	RGGWCCY	1 cut(s)	295
PscI	ACATGT	1 cut(s)	441
PsiI	TTATAA	1 cut(s)	855
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	718
PspEI	GGTNACC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	3 cut(s)	296, 297, 1278
PspPI	GGNCC	1 cut(s)	295
PspPPI	RGGWCCY	1 cut(s)	295
PsrI	GAACNNNNNNTAC	2 cut(s)	47, 79
RsaI	GTAC	8 cut(s)	56, 77, 226, 386, 911, 1240, 1269, 1328
RsaNI	GTAC	8 cut(s)	55, 76, 225, 385, 910, 1239, 1268, 1327
RseI	CAYNNNNRTG	2 cut(s)	315, 567
SaqAI	TTAA	5 cut(s)	378, 1004, 1211, 1230, 1383
SatI	GCNGC	1 cut(s)	972
Sau3AI	GATC	6 cut(s)	241, 472, 1038, 1165, 1216, 1375
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	2 cut(s)	547, 755
ScrFI	CCNGG	2 cut(s)	720, 1202
SduI	GDGCHC	2 cut(s)	105, 420
SfaNI	GCATC	2 cut(s)	1133, 1151
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	2 cut(s)	315, 567
SphI	GCATGC	1 cut(s)	1400
SsiI	CCGC	4 cut(s)	39, 269, 786, 972
SspI	AATATT	1 cut(s)	859
SspMI	CTAG	4 cut(s)	228, 783, 1059, 1340
StyD4I	CCNGG	2 cut(s)	718, 1200
TaaI	ACNGT	4 cut(s)	265, 618, 1020, 1243
TaqI	TCGA	1 cut(s)	1145
TatI	WGTACW	2 cut(s)	909, 1238
TauI	GCSGC	1 cut(s)	974
Tru1I	TTAA	5 cut(s)	378, 1004, 1211, 1230, 1383
Tru9I	TTAA	5 cut(s)	378, 1004, 1211, 1230, 1383
TscAI	CASTG	1 cut(s)	1378
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	9 cut(s)	345, 551, 683, 794, 1001, 1037, 1077, 1178, 1402
TspRI	CASTG	1 cut(s)	1378
Van91I	CCANNNNNTGG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	5 cut(s)	233, 1105, 1335, 1385, 1409
XceI	RCATGY	3 cut(s)	445, 466, 1400
XspI	CTAG	4 cut(s)	228, 783, 1059, 1340
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.