pycom14g14700

JmjC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0008370
Physical Location & Seq
Forward (+)
17404287 .. 17406349
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g14700.5

Sequence Viewer

Length: 762 bp
ATGGGTATTCAAATTGGGGGGCAAATAGAGAAGGTGAGCGGGAAAAAACTGGGGTACTATGAGTTCGTGGAGAGGTATATGGAGAAAAACCAGCCTGTGGTGCTCACAGGTCTCATGGAAGATTGGAGGGCTTGCAGAGATTGGGTCACCGACAATGGCCAGCCAAATCTTCAATTTTTCGCTACCCATTTCGGAAAATCCAAAGTTCAGGTTGCAGATTGTGGTACTAGAGAATTCACAGATCAGAAGAGAATGGAAATGACCGTTGCGGACTTTGTTGAGCAATGGGACCCCGTTCAGGAGCATAGTAATGCTTCAAGTCATGAAGCTACGAGCAAGGCGTTGCTATATTTGAAGGACTGGCATTTTGTTAAGGAGTACCCAGAATACGAAGCCTACACAACTCCGGTGCTCTTTTGTGATGATTGGCTCAACATGTATCTTGACAATTATCACATGCATAATGATCCCAACATTTACTCAGAAAATAACGAAATAAGTTGCTCTGATTATCGTTTCGTTTACATGGGAGCAAAAGGCACTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGCTGGTCAGCGAATGTGTGTGGCAAAAAACGGTGGCTTTTCCTCTCTCCTTCTCAAAGTCATCTTGTGTTTGGCAGGAATATGAAAACTGGTTGGAGTGCATTCAAGAACCAAATGAGATTATCTTTGTGCCTAGCGGATGGTATCATCAAGTCCATAATTTGGAAGATACAATTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_8 JmjC

Protein Analysis

254

Amino Acids

29.59

Weight (kDa)

6.24

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 97, 741
AccBSI CCGCTC 1 cut(s) 39
AciI CCGC 3 cut(s) 39, 269, 716
AclWI GGATC 1 cut(s) 461
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 3 cut(s) 56, 226, 380
AfiI CCNNNNNNNGG 3 cut(s) 97, 298, 741
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 5 cut(s) 11, 173, 318, 355, 685
AluBI AGCT 2 cut(s) 329, 582
AluI AGCT 2 cut(s) 329, 582
Alw21I GWGCWC 2 cut(s) 105, 414
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 461
AoxI GGCC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 46, 139
AvaII GGWCC 1 cut(s) 289
BalI TGGCCA 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 105, 414
BccI CCATC 1 cut(s) 713
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 228, 713
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 290, 291
BmrI ACTGGG 1 cut(s) 59
BmuI ACTGGG 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 298, 741
Bse1I ACTGG 3 cut(s) 54, 365, 673
Bse3DI GCAATG 1 cut(s) 290
BseGI GGATG 1 cut(s) 724
BseLI CCNNNNNNNGG 3 cut(s) 97, 298, 741
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 3 cut(s) 54, 365, 673
BseRI GAGGAG 1 cut(s) 540
BshFI GGCC 1 cut(s) 159
BsiHKAI GWGCWC 2 cut(s) 105, 414
BsiSI CCGG 1 cut(s) 407
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 97, 298, 741
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 1 cut(s) 159
Bso31I GGTCTC 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 105, 414
Bsp143I GATC 2 cut(s) 241, 466
BspACI CCGC 3 cut(s) 39, 269, 716
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 494
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 290, 291
BspPI GGATC 1 cut(s) 461
BspTNI GGTCTC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 290
BsrI ACTGG 3 cut(s) 54, 365, 673
BssMI GATC 2 cut(s) 241, 466
Bst4CI ACNGT 2 cut(s) 265, 612
Bst6I CTCTTC 2 cut(s) 242, 558
BstC8I GCNNGC 2 cut(s) 133, 161
BstDEI CTNAG 1 cut(s) 481
BstEII GGTNACC 1 cut(s) 145
BstF5I GGATG 1 cut(s) 724
BstKTI GATC 2 cut(s) 244, 469
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 241, 466
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNSI RCATGY 2 cut(s) 439, 460
BstPI GGTNACC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 724
Cac8I GCNNGC 2 cut(s) 133, 161
CciI TCATGA 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 3 cut(s) 55, 225, 379
CviAII CATG 6 cut(s) 115, 323, 436, 457, 526, 557
CviJI RGCY 9 cut(s) 94, 131, 159, 163, 329, 395, 430, 582, 616
CviKI_1 RGCY 9 cut(s) 94, 131, 159, 163, 329, 395, 430, 582, 616
CviQI GTAC 3 cut(s) 55, 225, 379
DdeI CTNAG 1 cut(s) 481
DpnI GATC 2 cut(s) 243, 468
DpnII GATC 2 cut(s) 241, 466
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 242, 558
EarI CTCTTC 2 cut(s) 242, 558
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 289
Eco91I GGTNACC 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 289
EcoO65I GGTNACC 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 462
FaeI CATG 6 cut(s) 118, 326, 439, 460, 529, 560
FaqI GGGAC 1 cut(s) 302
FatI CATG 6 cut(s) 114, 322, 435, 456, 525, 556
FauI CCCGC 1 cut(s) 32
FokI GGATG 1 cut(s) 731
FspBI CTAG 2 cut(s) 228, 713
HaeIII GGCC 1 cut(s) 159
HapII CCGG 1 cut(s) 407
Hin1II CATG 6 cut(s) 118, 326, 439, 460, 529, 560
HinfI GANTC 1 cut(s) 547
HpaII CCGG 1 cut(s) 407
HphI GGTGA 2 cut(s) 46, 139
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 4 cut(s) 194, 246, 484, 508
Hpy188III TCNNGA 4 cut(s) 299, 323, 443, 685
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 3 cut(s) 25, 349, 639
HpyCH4III ACNGT 2 cut(s) 265, 612
HpyCH4V TGCA 4 cut(s) 135, 215, 460, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 481
Hsp92II CATG 6 cut(s) 118, 326, 439, 460, 529, 560
KflI GGGWCCC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 241, 466
LmnI GCTCC 2 cut(s) 301, 530
MaeI CTAG 2 cut(s) 228, 713
MaeIII GTNAC 1 cut(s) 145
MalI GATC 2 cut(s) 243, 468
MbiI CCGCTC 1 cut(s) 39
MboI GATC 2 cut(s) 241, 466
MboII GAAGA 5 cut(s) 131, 161, 259, 545, 757
MhlI GDGCHC 2 cut(s) 105, 414
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 6 cut(s) 12, 173, 233, 448, 738, 752
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 1 cut(s) 653
MnlI CCTC 4 cut(s) 66, 120, 561, 632
Mox20I TGGCCA 1 cut(s) 159
Mph1103I ATGCAT 1 cut(s) 462
MscI TGGCCA 1 cut(s) 159
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 2 cut(s) 309, 561
Msp20I TGGCCA 1 cut(s) 159
MspI CCGG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 680
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 2 cut(s) 241, 466
NlaIII CATG 6 cut(s) 118, 326, 439, 460, 529, 560
NlaIV GGNNCC 2 cut(s) 290, 291
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 2 cut(s) 439, 460
PagI TCATGA 1 cut(s) 322
PciI ACATGT 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 338
PctI GAATGC 1 cut(s) 680
PflMI CCANNNNNTGG 2 cut(s) 97, 741
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
PpuMI RGGWCCY 1 cut(s) 289
PscI ACATGT 1 cut(s) 435
Psp5II RGGWCCY 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 290, 291
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
PsrI GAACNNNNNNTAC 2 cut(s) 47, 79
RsaI GTAC 3 cut(s) 56, 226, 380
RsaNI GTAC 3 cut(s) 55, 225, 379
RseI CAYNNNNRTG 2 cut(s) 309, 561
SaqAI TTAA 1 cut(s) 372
Sau3AI GATC 2 cut(s) 241, 466
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 541
SduI GDGCHC 2 cut(s) 105, 414
SetI ASST 7 cut(s) 36, 77, 112, 213, 331, 575, 584
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 2 cut(s) 309, 561
Sse9I AATT 6 cut(s) 12, 173, 233, 448, 738, 752
SsiI CCGC 3 cut(s) 39, 269, 716
SspMI CTAG 2 cut(s) 228, 713
TaaI ACNGT 2 cut(s) 265, 612
TasI AATT 6 cut(s) 12, 173, 233, 448, 738, 752
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 3 cut(s) 339, 545, 677
Van91I CCANNNNNTGG 2 cut(s) 97, 741
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 233
XceI RCATGY 2 cut(s) 439, 460
XspI CTAG 2 cut(s) 228, 713
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.