Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008370

Physical Location & Seq

Genomic Coordinates Reverse (-)

56418454 .. 56423056

Gene Structure 4603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGGATCAAAATAGGGGGTGAAATAGAGAGGGTGAATGGGAAAGAGATGAGTTACAGTGAGTTTGTGGAGAGGTACATGGAGAAGAACCAGCCTGTGGTGCTGACAGGTCTCATGGATGATTGGAGGGCTTGCAGAGATTGGGTCACCGATGATGGCAACCCCAATCTTCAATTTTTCGCTACCCATTTTGGAAAATCCAAAGTTCAGGTTGCAGATTGCGGTACTAGAGAATACACGGATCAGAAGAGATTAGAAATGACTGTTGGAGAATTTGTTGAGCAATGGCGTGGGGATTCTGTGCAAGAACATTGTACCGCTCCAAGTCCCGCAGGTGGGAGCAAGATGTTGCTATATTTGAAGGACTGGCATTTTGTAAAGGAGTACCCAGAATATACAGCATACACAACTCCAATGTTCTTTTGTGATGATTTGCTTAACGCTTATCTTGACAATTATCGTATGCATAACGACCCCAACATTTACTCTGAAAATAATGACATAAGCTGCTCTGACTATCGATTTGTTTATATGGGAGCAAAAGGCACATGGACTCCTCTTCATGCTGATGTTTTCAGGAATATGAAAAACAGTGTATATAATATCTTTGATGATGTCAGTGAAACAAAATTTCCTGGTTTTGCAAAGGCTATCTGGTTTGAGTGCACTCAAGAACAAAATGACATTATCTTTGTGCCTAGTGGATGGTATCATCAAGTCCATAATTTGGAAGATACCATTTCAATAAACCACAACTGGTTCAATGCTAATAATCTTCGTTGGGTGTGGGATTTGCTTTTGAGGGACTACAATGAGGCTAAGGAGTACATAGAAGACATTAAGGAAATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAACCTTGCCGCCAATACAGGCATGAACTTCAATGATTTCTTAATATTCCTAGCACGTATTTCCTTTGCCAACTTGATTCAACTTCAGTATCTCAGCAGGAAGAATGGGAATCACACTCAGAATTTATCCCCAATAGCTCAGCATTTCACTTTCAACCTTGTATCAATTCAGAAAATTGCATCCAGTATAAGCTCCTTGCAAGATCTGAACGGAAGTCATGGCTTTTATTTGGATTTTAAGGAAACATTAAATGATCCAGGGTTCATTAAACTTTGTGCAGTTTTGGGAAAAACATATGGGACGATACACATGCAACAAAACTGGAATTTTGATACTAAGAAAGCTTGGATAGATGATATGAAAGACTTGGACGTTATAGGAACTAGTAATTCTCAGTTCCATGAGAAGGGATATTCTTCTACAAGATGTCCATCGCAAACTACTGATTATCAAGATGTTTTTGAGGTGTATAGTGACCTTCTGTGGCGTTTGCATGCCATGATCATAAATCTGCCTGAAGCACAGATTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 JmjC

Protein Analysis

470

Amino Acids

54.64

Weight (kDa)

4.97

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	21 - 195	3.4e-08	Cupin-like domain
Cupin_8	PF13621	204 - 255	4.4e-08	Cupin-like domain
JmjC	PF02373	221 - 253	9.7e-09	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63080
fragaria_vesca	FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750
malus_domestica	MD14G1175900.v1.1
prunus_persica	Prupe.5G169900_v2.0.a1
pyrus_communis	pycom14g08050 pycom14g14700
rosa_chinensis	RchiOBHm_Chr7g0193061
rosa_laevigata	RLG00000004298
rosa_multiflora	Rmu_ssc0000002.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262410
rosa_rugosa	Rorug07G0007400
rosa_samantha	Rh7AG132500 Rh7BG133400 Rh7CG136500 Rh7DG134400
rosa_wichuraiana	Rw7G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	323
AccB7I	CCANNNNNTGG	2 cut(s)	97, 727
AccBSI	CCGCTC	1 cut(s)	320
AciI	CCGC	4 cut(s)	222, 318, 330, 888
AclWI	GGATC	3 cut(s)	14, 249, 1127
AcsI	RAATTY	4 cut(s)	272, 629, 1000, 1204
AcuI	CTGAAG	1 cut(s)	947
AfaI	GTAC	5 cut(s)	77, 226, 316, 386, 827
AfiI	CCNNNNNNNGG	5 cut(s)	97, 335, 336, 727, 1285
AgsI	TTSAA	8 cut(s)	173, 361, 744, 763, 863, 910, 959, 1033
AhlI	ACTAGT	1 cut(s)	1262
AjnI	CCWGG	2 cut(s)	634, 1135
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	4 cut(s)	507, 1016, 1071, 1223
AluI	AGCT	4 cut(s)	507, 1016, 1071, 1223
Alw21I	GWGCWC	1 cut(s)	668
Alw26I	GTCTC	2 cut(s)	116, 872
Alw44I	GTGCAC	1 cut(s)	664
AlwI	GGATC	3 cut(s)	14, 249, 1127
ApaLI	GTGCAC	1 cut(s)	664
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	4 cut(s)	272, 629, 1000, 1204
ArsI	GACNNNNNNTTYG	6 cut(s)	356, 388, 506, 538, 674, 706
AspLEI	GCGC	1 cut(s)	879
AsuHPI	GGTGA	3 cut(s)	32, 46, 139
BaeGI	GKGCMC	1 cut(s)	668
BaeI	ACNNNNGTAYC	2 cut(s)	950, 983
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	1 cut(s)	668
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	3 cut(s)	149, 699, 1318
BcgI	CGANNNNNNTGC	3 cut(s)	1171, 1205, 1389
BciT130I	CCWGG	2 cut(s)	636, 1137
BclI	TGATCA	1 cut(s)	1380
BcoDI	GTCTC	2 cut(s)	116, 872
BcuI	ACTAGT	1 cut(s)	1262
BfaI	CTAG	4 cut(s)	228, 699, 929, 1263
BfuAI	ACCTGC	1 cut(s)	323
BglII	AGATCT	1 cut(s)	1081
BisI	GCNGC	2 cut(s)	508, 888
BlpI	GCTNAGC	1 cut(s)	1017
BlsI	GCNGC	2 cut(s)	509, 889
Bme1390I	CCNGG	2 cut(s)	636, 1137
BmrFI	CCNGG	2 cut(s)	636, 1137
BmsI	GCATC	1 cut(s)	1067
BpiI	GAAGAC	1 cut(s)	840
Bpu10I	CCTNAGC	1 cut(s)	819
Bpu1102I	GCTNAGC	1 cut(s)	1017
BpuEI	CTTGAG	1 cut(s)	654
Bsa29I	ATCGAT	1 cut(s)	520
BsaAI	YACGTR	1 cut(s)	935
BsaBI	GATNNNNATC	1 cut(s)	1309
BsaI	GGTCTC	2 cut(s)	116, 872
BsaJI	CCNNGG	1 cut(s)	1136
BsaXI	ACNNNNNCTCC	4 cut(s)	261, 291, 538, 568
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 335, 336, 727, 1285
Bse1I	ACTGG	4 cut(s)	371, 761, 1062, 1205
Bse3DI	GCAATG	1 cut(s)	290
Bse8I	GATNNNNATC	1 cut(s)	1309
BseBI	CCWGG	2 cut(s)	636, 1137
BseCI	ATCGAT	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	1136
BseGI	GGATG	3 cut(s)	124, 710, 1058
BseJI	GATNNNNATC	1 cut(s)	1309
BseLI	CCNNNNNNNGG	5 cut(s)	97, 335, 336, 727, 1285
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	4 cut(s)	985, 1010, 1031, 1286
BseNI	ACTGG	4 cut(s)	371, 761, 1062, 1205
BseRI	GAGGAG	1 cut(s)	546
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	1176
BshVI	ATCGAT	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	668
BslFI	GGGAC	3 cut(s)	312, 818, 1192
BslI	CCNNNNNNNGG	5 cut(s)	97, 335, 336, 727, 1285
BsmAI	GTCTC	2 cut(s)	116, 872
BsmFI	GGGAC	3 cut(s)	312, 818, 1192
Bso31I	GGTCTC	2 cut(s)	116, 872
Bsp1286I	GDGCHC	1 cut(s)	668
Bsp143I	GATC	5 cut(s)	6, 241, 1081, 1132, 1380
Bsp1720I	GCTNAGC	1 cut(s)	1017
BspACI	CCGC	4 cut(s)	222, 318, 330, 888
BspCNI	CTCAG	4 cut(s)	984, 1009, 1030, 1285
BspDI	ATCGAT	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	3 cut(s)	14, 249, 1127
BspTNI	GGTCTC	2 cut(s)	116, 872
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	4 cut(s)	371, 761, 1062, 1205
BssECI	CCNNGG	1 cut(s)	1136
BssMI	GATC	5 cut(s)	6, 241, 1081, 1132, 1380
Bst2UI	CCWGG	2 cut(s)	636, 1137
Bst4CI	ACNGT	3 cut(s)	59, 265, 593
Bst6I	CTCTTC	2 cut(s)	242, 564
BstBAI	YACGTR	1 cut(s)	935
BstC8I	GCNNGC	3 cut(s)	133, 875, 1374
BstDEI	CTNAG	6 cut(s)	819, 971, 996, 1017, 1215, 1272
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	3 cut(s)	124, 710, 1058
BstHHI	GCGC	1 cut(s)	879
BstKTI	GATC	5 cut(s)	9, 244, 1084, 1135, 1383
BstMAI	GTCTC	2 cut(s)	116, 872
BstMBI	GATC	5 cut(s)	6, 241, 1081, 1132, 1380
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	636, 1137
BstNSI	RCATGY	2 cut(s)	1192, 1376
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	634, 1135
BstSLI	GKGCMC	1 cut(s)	668
BstV1I	GCAGC	1 cut(s)	494
BstV2I	GAAGAC	1 cut(s)	840
BstX2I	RGATCY	1 cut(s)	1081
BstYI	RGATCY	1 cut(s)	1081
Bsu15I	ATCGAT	1 cut(s)	520
BsuTUI	ATCGAT	1 cut(s)	520
BtgZI	GCGATG	1 cut(s)	1296
BtsCI	GGATG	3 cut(s)	124, 710, 1058
BtsIMutI	CAGTG	3 cut(s)	64, 598, 625
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	3 cut(s)	133, 875, 1374
CfoI	GCGC	1 cut(s)	879
ClaI	ATCGAT	1 cut(s)	520
Csp6I	GTAC	5 cut(s)	76, 225, 315, 385, 826
CviJI	RGCY	9 cut(s)	94, 131, 507, 650, 818, 1016, 1071, 1101, 1223
CviKI_1	RGCY	9 cut(s)	94, 131, 507, 650, 818, 1016, 1071, 1101, 1223
CviQI	GTAC	5 cut(s)	76, 225, 315, 385, 826
DdeI	CTNAG	6 cut(s)	819, 971, 996, 1017, 1215, 1272
DpnI	GATC	5 cut(s)	8, 243, 1083, 1134, 1382
DpnII	GATC	5 cut(s)	6, 241, 1081, 1132, 1380
Eam1104I	CTCTTC	2 cut(s)	242, 564
EarI	CTCTTC	2 cut(s)	242, 564
Eco31I	GGTCTC	2 cut(s)	116, 872
Eco57I	CTGAAG	1 cut(s)	947
Eco91I	GGTNACC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	634, 1135
EcoT22I	ATGCAT	1 cut(s)	468
FaqI	GGGAC	3 cut(s)	312, 818, 1192
FauI	CCCGC	1 cut(s)	337
FauNDI	CATATG	1 cut(s)	1174
FbaI	TGATCA	1 cut(s)	1380
Fnu4HI	GCNGC	2 cut(s)	508, 888
FokI	GGATG	3 cut(s)	131, 717, 1045
Fsp4HI	GCNGC	2 cut(s)	508, 888
FspBI	CTAG	4 cut(s)	228, 699, 929, 1263
GlaI	GCGC	1 cut(s)	878
GluI	GCNGC	2 cut(s)	508, 888
HhaI	GCGC	1 cut(s)	879
Hin6I	GCGC	1 cut(s)	877
HinP1I	GCGC	1 cut(s)	877
HindIII	AAGCTT	1 cut(s)	1221
HinfI	GANTC	4 cut(s)	296, 553, 955, 988
HphI	GGTGA	3 cut(s)	32, 46, 139
Hpy166II	GTNNAC	1 cut(s)	666
Hpy188I	TCNGA	6 cut(s)	246, 490, 514, 999, 1050, 1086
Hpy188III	TCNNGA	5 cut(s)	449, 577, 671, 1331, 1410
Hpy8I	GTNNAC	1 cut(s)	666
HpyAV	CCTTC	4 cut(s)	355, 857, 1279, 1367
HpyCH4III	ACNGT	3 cut(s)	59, 265, 593
HpyCH4IV	ACGT	2 cut(s)	934, 1251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	6 cut(s)	819, 971, 996, 1017, 1215, 1272
HpySE526I	ACGT	2 cut(s)	934, 1251
HspAI	GCGC	1 cut(s)	877
Ksp22I	TGATCA	1 cut(s)	1380
Kzo9I	GATC	5 cut(s)	6, 241, 1081, 1132, 1380
LmnI	GCTCC	4 cut(s)	325, 339, 536, 1076
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	1 cut(s)	1067
MaeI	CTAG	4 cut(s)	228, 699, 929, 1263
MaeII	ACGT	2 cut(s)	934, 1251
MaeIII	GTNAC	3 cut(s)	53, 145, 1352
MalI	GATC	5 cut(s)	8, 243, 1083, 1134, 1382
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	5 cut(s)	6, 241, 1081, 1132, 1380
MboII	GAAGA	9 cut(s)	97, 161, 259, 551, 743, 767, 845, 991, 1287
MflI	RGATCY	1 cut(s)	1081
MhlI	GDGCHC	1 cut(s)	668
MlyI	GAGTC	1 cut(s)	547
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	24, 66, 120, 567, 795, 808, 1336
Mph1103I	ATGCAT	1 cut(s)	468
MseI	TTAA	6 cut(s)	438, 840, 920, 1116, 1127, 1146
MslI	CAYNNNNRTG	1 cut(s)	567
MspR9I	CCNGG	2 cut(s)	636, 1137
MvaI	CCWGG	2 cut(s)	636, 1137
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeI	CATATG	1 cut(s)	1174
NdeII	GATC	5 cut(s)	6, 241, 1081, 1132, 1380
NmuCI	GTSAC	2 cut(s)	145, 1352
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	2 cut(s)	1192, 1376
PaeI	GCATGC	1 cut(s)	1376
PaqCI	CACCTGC	1 cut(s)	323
PfeI	GAWTC	3 cut(s)	296, 955, 988
PflMI	CCANNNNNTGG	2 cut(s)	97, 727
PkrI	GCNGC	2 cut(s)	509, 889
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Ppu21I	YACGTR	1 cut(s)	935
Psp6I	CCWGG	2 cut(s)	634, 1135
PspEI	GGTNACC	1 cut(s)	145
PspGI	CCWGG	2 cut(s)	634, 1135
PsuI	RGATCY	1 cut(s)	1081
RsaI	GTAC	5 cut(s)	77, 226, 316, 386, 827
RsaNI	GTAC	5 cut(s)	76, 225, 315, 385, 826
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	6 cut(s)	438, 840, 920, 1116, 1127, 1146
SatI	GCNGC	2 cut(s)	508, 888
Sau3AI	GATC	5 cut(s)	6, 241, 1081, 1132, 1380
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	2 cut(s)	636, 1137
SduI	GDGCHC	1 cut(s)	668
SfaNI	GCATC	1 cut(s)	1067
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
SpeI	ACTAGT	1 cut(s)	1262
SphI	GCATGC	1 cut(s)	1376
SsiI	CCGC	4 cut(s)	222, 318, 330, 888
SspI	AATATT	1 cut(s)	924
SspMI	CTAG	4 cut(s)	228, 699, 929, 1263
StyD4I	CCNGG	2 cut(s)	634, 1135
TaaI	ACNGT	3 cut(s)	59, 265, 593
TaiI	ACGT	2 cut(s)	937, 1254
TaqI	TCGA	1 cut(s)	520
TatI	WGTACW	1 cut(s)	825
TauI	GCSGC	1 cut(s)	890
TfiI	GAWTC	3 cut(s)	296, 955, 988
Tru1I	TTAA	6 cut(s)	438, 840, 920, 1116, 1127, 1146
Tru9I	TTAA	6 cut(s)	438, 840, 920, 1116, 1127, 1146
TscAI	CASTG	3 cut(s)	64, 598, 625
TseFI	GTSAC	2 cut(s)	145, 1352
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	2 cut(s)	145, 1352
TspDTI	ATGAA	5 cut(s)	551, 599, 917, 1132, 1253
TspGWI	ACGGA	2 cut(s)	254, 1104
TspRI	CASTG	3 cut(s)	64, 598, 625
Van91I	CCANNNNNTGG	2 cut(s)	97, 727
VneI	GTGCAC	1 cut(s)	664
XapI	RAATTY	4 cut(s)	272, 629, 1000, 1204
XceI	RCATGY	2 cut(s)	1192, 1376
XspI	CTAG	4 cut(s)	228, 699, 929, 1263
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.