Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008370

Physical Location & Seq

Genomic Coordinates Forward (+)

14569113 .. 14572769

Gene Structure 3657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G169900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGGTATCAAAATTGGCGGGCAAATTGAGAAGGTGAATGGGAAAGAGCTCAGTTACGATGAGTTTGTGGAGAGGTACATGGAGAAAAACCACCCTGTGGTGCTCACAGGTCTCATGGACGATTGGAAGGCTTGCAGAGACTGGGTCACTGACAATGGCCAGCCCAATCTTCAATTTTTCGCTACCCATTTTGGGAAATCCAAAGTTCAGGTTGCGGATTGTGGTACTAGAGAATTCACAGATCAGAAAAGGTTGGAAATGACTGTTGCAGAATTTGTTGAGCAATGGCTTGGGGACCCCATGCAGGAGCATGGCAATGCTTCAAGTCATTCAGCTATGAGCAAGATGTCGCTATATTTGAAGGACTGGCATTTTGTAAAGGAGTACCCAGAATTCGAAGCATACACAACTCCGGTGTTCTTTTGTGATGATTGGCTCAACATATATCTTGACAATTATCATATGCATAATGATCCCAACATTTACTCAGAAAATAACGAAATAAGTTGCTCTGATTATCGTTTTGTTTACATGGGAGCAAAAGGCACCTGGACTCCTTTTCATGCTGATGTTTTTAGGTCATATAGCTGGTCAGCCAATGTGTGCGGCAAAAAACGGTGGCTTCTCCTGTCTCCTTCTCAAAGTCATCTTGTGTTTGACAGGAATATGAAAAGCTGTGTATATAATATCTTTGATGAAGTTAATGAAACTAAGATTTCTGGGTTTGCAGAGACTATCTGGTTGGAGTGCACTCAAGAGCAAAATGAGATTATCTTTGTGCCTAGCGGATGGTATCATCAAGTTCATAATTTGGAAGGTACAATTTCAATAAACCACAACTGGTTCAACGCTTATAATCTCCGTTGGGTGTGGGATTTGCTCTTGAGGGACTACAACGAGGCTAAGGAGTACATAGAAGACATCAAGGATGTATGTGATGACTTTGAAGGTCTCTGCCAACGCAACCTTGCCGCTAATACAGGCATGAACTTCAATGATTTCTTAATCTTCCTAGCACGGTTGTCCTTAGCCAACTATATCCAACTTCATTATCTCTCTAGAAAGAATGGAAATCACACTTGGAATTTATCCCCAATAGCTCAGCATTTGACTTTCAACCTTGCATCTATTCAGAAAATTGCGTTGAATATAAAATCTGTAGAAGATTTGACAGGAAGTCATGGATTTCATTTGGATTTTCGGGAAACCTTAAAGGATCCTGAGTTCTTTAAACTGTGTACAATTTTGGGAAAAACATATGGGATGGTACACATGCAACTGAACTGGAATTCTGCAACAAAGAATGCTTGGATAGATGATATGAAGGACTTGGACGTCATAGGAACTTGTAGTTCTCAAGTCTGCAATCCTGAAGATCTTATTAAATTTATAGAACTTGCTGTTGCAGAATTCATGGGCGTTCGAATAGCAGAAGATGATTCCCGTCTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 JmjC

Protein Analysis

485

Amino Acids

56.38

Weight (kDa)

5.18

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63080
fragaria_vesca	FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750
malus_domestica	MD14G1175900.v1.1
prunus_persica	Prupe.5G169900_v2.0.a1
pyrus_communis	pycom14g08050 pycom14g14700
rosa_chinensis	RchiOBHm_Chr7g0193061
rosa_laevigata	RLG00000004298
rosa_multiflora	Rmu_ssc0000002.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262410
rosa_rugosa	Rorug07G0007400
rosa_samantha	Rh7AG132500 Rh7BG133400 Rh7CG136500 Rh7DG134400
rosa_wichuraiana	Rw7G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AasI	GACNNNNNNGTC	1 cut(s)	1334
AatII	GACGTC	1 cut(s)	1338
AccB1I	GGYRCC	1 cut(s)	545
AccB7I	CCANNNNNTGG	1 cut(s)	97
AciI	CCGC	5 cut(s)	18, 215, 606, 786, 972
AclWI	GGATC	3 cut(s)	467, 1211, 1224
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	7 cut(s)	233, 272, 392, 1084, 1288, 1385, 1409
AcuI	CTGAAG	1 cut(s)	1392
AcyI	GRCGYC	1 cut(s)	1335
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	7 cut(s)	77, 226, 386, 820, 911, 1240, 1269
AfiI	CCNNNNNNNGG	3 cut(s)	97, 192, 304
AgsI	TTSAA	9 cut(s)	173, 324, 361, 828, 847, 947, 994, 1117, 1147
AhdI	GACNNNNNGTC	1 cut(s)	1176
AjnI	CCWGG	1 cut(s)	548
AjuI	GAANNNNNNNTTGG	2 cut(s)	1063, 1095
AloI	GAACNNNNNNTCC	2 cut(s)	1208, 1240
AluBI	AGCT	5 cut(s)	49, 335, 588, 675, 1100
AluI	AGCT	5 cut(s)	49, 335, 588, 675, 1100
Alw21I	GWGCWC	3 cut(s)	51, 105, 752
Alw26I	GTCTC	5 cut(s)	116, 132, 636, 725, 956
Alw44I	GTGCAC	1 cut(s)	748
AlwI	GGATC	3 cut(s)	467, 1211, 1224
AlwNI	CAGNNNCTG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	157
ApaLI	GTGCAC	1 cut(s)	748
ApoI	RAATTY	7 cut(s)	233, 272, 392, 1084, 1288, 1385, 1409
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	46
AsuII	TTCGAA	2 cut(s)	396, 1423
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	752
BalI	TGGCCA	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	1216
BanI	GGYRCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	924
Bbv12I	GWGCWC	3 cut(s)	51, 105, 752
BccI	CCATC	2 cut(s)	783, 1258
BciT130I	CCWGG	1 cut(s)	550
BcoDI	GTCTC	5 cut(s)	116, 132, 636, 725, 956
BfaI	CTAG	4 cut(s)	228, 783, 1013, 1059
BfmI	CTRYAG	1 cut(s)	1158
BglII	AGATCT	1 cut(s)	1375
BisI	GCNGC	2 cut(s)	607, 972
BlpI	GCTNAGC	1 cut(s)	1101
BlsI	GCNGC	2 cut(s)	608, 973
Bme1390I	CCNGG	1 cut(s)	550
Bme18I	GGWCC	1 cut(s)	295
BmeRI	GACNNNNNGTC	1 cut(s)	1176
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	4 cut(s)	296, 297, 547, 1218
BmrFI	CCNGG	1 cut(s)	550
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	1133
BmuI	ACTGGG	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	924
Bpu10I	CCTNAGC	2 cut(s)	903, 1027
Bpu1102I	GCTNAGC	1 cut(s)	1101
Bpu14I	TTCGAA	2 cut(s)	396, 1423
BpuEI	CTTGAG	3 cut(s)	738, 904, 1341
BsaHI	GRCGYC	1 cut(s)	1335
BsaI	GGTCTC	2 cut(s)	116, 956
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 192, 304
Bse1I	ACTGG	4 cut(s)	146, 371, 845, 1289
Bse3DI	GCAATG	2 cut(s)	290, 322
BseBI	CCWGG	1 cut(s)	550
BseGI	GGATG	3 cut(s)	794, 934, 1269
BseLI	CCNNNNNNNGG	3 cut(s)	97, 192, 304
BseMI	GCAATG	2 cut(s)	290, 322
BseMII	CTCAG	4 cut(s)	64, 501, 1115, 1212
BseNI	ACTGG	4 cut(s)	146, 371, 845, 1289
BseSI	GKGCMC	1 cut(s)	752
BshFI	GGCC	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	545
BsiHKAI	GWGCWC	3 cut(s)	51, 105, 752
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	2 cut(s)	308, 902
BslI	CCNNNNNNNGG	3 cut(s)	97, 192, 304
BsmAI	GTCTC	5 cut(s)	116, 132, 636, 725, 956
BsmFI	GGGAC	2 cut(s)	308, 902
BsmI	GAATGC	1 cut(s)	1309
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	2 cut(s)	116, 956
Bsp119I	TTCGAA	2 cut(s)	396, 1423
Bsp1286I	GDGCHC	3 cut(s)	51, 105, 752
Bsp1407I	TGTACA	1 cut(s)	1238
Bsp143I	GATC	4 cut(s)	241, 472, 1216, 1375
Bsp1720I	GCTNAGC	1 cut(s)	1101
BspACI	CCGC	5 cut(s)	18, 215, 606, 786, 972
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	4 cut(s)	63, 500, 1114, 1213
BspLI	GGNNCC	4 cut(s)	296, 297, 547, 1218
BspPI	GGATC	3 cut(s)	467, 1211, 1224
BspT104I	TTCGAA	2 cut(s)	396, 1423
BspT107I	GGYRCC	1 cut(s)	545
BspTNI	GGTCTC	2 cut(s)	116, 956
BsrDI	GCAATG	2 cut(s)	290, 322
BsrGI	TGTACA	1 cut(s)	1238
BsrI	ACTGG	4 cut(s)	146, 371, 845, 1289
BssMI	GATC	4 cut(s)	241, 472, 1216, 1375
BssNI	GRCGYC	1 cut(s)	1335
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	4 cut(s)	265, 618, 1020, 1236
BstACI	GRCGYC	1 cut(s)	1335
BstAUI	TGTACA	1 cut(s)	1238
BstBI	TTCGAA	2 cut(s)	396, 1423
BstC8I	GCNNGC	3 cut(s)	20, 133, 161
BstDEI	CTNAG	7 cut(s)	50, 487, 711, 903, 1027, 1101, 1221
BstF5I	GGATG	3 cut(s)	794, 934, 1269
BstKTI	GATC	4 cut(s)	244, 475, 1219, 1378
BstMAI	GTCTC	5 cut(s)	116, 132, 636, 725, 956
BstMBI	GATC	4 cut(s)	241, 472, 1216, 1375
BstNI	CCWGG	1 cut(s)	550
BstNSI	RCATGY	1 cut(s)	1276
BstSCI	CCNGG	1 cut(s)	548
BstSFI	CTRYAG	1 cut(s)	1158
BstSLI	GKGCMC	1 cut(s)	752
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	2 cut(s)	1216, 1375
BstYI	RGATCY	2 cut(s)	1216, 1375
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	794, 934, 1269
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	20, 133, 161
CaiI	CAGNNNCTG	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	7 cut(s)	76, 225, 385, 819, 910, 1239, 1268
CviQI	GTAC	7 cut(s)	76, 225, 385, 819, 910, 1239, 1268
DdeI	CTNAG	7 cut(s)	50, 487, 711, 903, 1027, 1101, 1221
DpnI	GATC	4 cut(s)	243, 474, 1218, 1377
DpnII	GATC	4 cut(s)	241, 472, 1216, 1375
DraI	TTTAAA	1 cut(s)	1231
DraIII	CACNNNGTG	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	1334
DriI	GACNNNNNGTC	1 cut(s)	1176
DseDI	GACNNNNNNGTC	1 cut(s)	1334
EaeI	YGGCCR	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	1176
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	51
Eco31I	GGTCTC	2 cut(s)	116, 956
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	1392
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRI	GAATTC	4 cut(s)	233, 392, 1288, 1409
EcoRII	CCWGG	1 cut(s)	548
EcoT22I	ATGCAT	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	51
FaqI	GGGAC	2 cut(s)	308, 902
FauI	CCCGC	1 cut(s)	11
FauNDI	CATATG	2 cut(s)	462, 1258
Fnu4HI	GCNGC	2 cut(s)	607, 972
FokI	GGATG	3 cut(s)	801, 941, 1276
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	2 cut(s)	607, 972
FspBI	CTAG	4 cut(s)	228, 783, 1013, 1059
GluI	GCNGC	2 cut(s)	607, 972
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	413
Hin1I	GRCGYC	1 cut(s)	1335
HinfI	GANTC	2 cut(s)	553, 1439
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	529, 750, 1239, 1270
Hpy188I	TCNGA	4 cut(s)	246, 490, 514, 1134
Hpy188III	TCNNGA	7 cut(s)	449, 755, 883, 1059, 1202, 1220, 1370
Hpy8I	GTNNAC	4 cut(s)	529, 750, 1239, 1270
HpyAV	CCTTC	7 cut(s)	25, 121, 355, 645, 809, 941, 1318
HpyCH4III	ACNGT	4 cut(s)	265, 618, 1020, 1236
HpyCH4IV	ACGT	1 cut(s)	1335
HpyF3I	CTNAG	7 cut(s)	50, 487, 711, 903, 1027, 1101, 1221
HpySE526I	ACGT	1 cut(s)	1335
Hsp92I	GRCGYC	1 cut(s)	1335
KflI	GGGWCCC	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	241, 472, 1216, 1375
LmnI	GCTCC	2 cut(s)	307, 536
LweI	GCATC	1 cut(s)	1133
MaeI	CTAG	4 cut(s)	228, 783, 1013, 1059
MaeII	ACGT	1 cut(s)	1335
MaeIII	GTNAC	2 cut(s)	53, 145
MalI	GATC	4 cut(s)	243, 474, 1218, 1377
MboI	GATC	4 cut(s)	241, 472, 1216, 1375
MboII	GAAGA	6 cut(s)	161, 929, 1000, 1175, 1385, 1445
MflI	RGATCY	2 cut(s)	1216, 1375
MhlI	GDGCHC	3 cut(s)	51, 105, 752
MlsI	TGGCCA	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	547
MmeI	TCCRAC	3 cut(s)	234, 723, 1066
MnlI	CCTC	3 cut(s)	66, 879, 892
Mox20I	TGGCCA	1 cut(s)	159
Mph1103I	ATGCAT	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	5 cut(s)	702, 1004, 1211, 1230, 1383
MslI	CAYNNNNRTG	2 cut(s)	315, 567
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	550
Mva1269I	GAATGC	1 cut(s)	1309
MvaI	CCWGG	1 cut(s)	550
NdeI	CATATG	2 cut(s)	462, 1258
NdeII	GATC	4 cut(s)	241, 472, 1216, 1375
NlaIV	GGNNCC	4 cut(s)	296, 297, 547, 1218
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	1 cut(s)	1276
NspV	TTCGAA	2 cut(s)	396, 1423
PctI	GAATGC	1 cut(s)	1309
PfeI	GAWTC	1 cut(s)	1439
PflFI	GACNNNGTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	97
PkrI	GCNGC	2 cut(s)	608, 973
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PpuMI	RGGWCCY	1 cut(s)	295
PsiI	TTATAA	1 cut(s)	855
Psp124BI	GAGCTC	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	4 cut(s)	296, 297, 547, 1218
PspPI	GGNCC	1 cut(s)	295
PspPPI	RGGWCCY	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	1216, 1375
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	7 cut(s)	77, 226, 386, 820, 911, 1240, 1269
RsaNI	GTAC	7 cut(s)	76, 225, 385, 819, 910, 1239, 1268
RseI	CAYNNNNRTG	2 cut(s)	315, 567
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	5 cut(s)	702, 1004, 1211, 1230, 1383
SatI	GCNGC	2 cut(s)	607, 972
Sau3AI	GATC	4 cut(s)	241, 472, 1216, 1375
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	3 cut(s)	51, 105, 752
SfaNI	GCATC	1 cut(s)	1133
SfcI	CTRYAG	1 cut(s)	1158
SfuI	TTCGAA	2 cut(s)	396, 1423
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	2 cut(s)	315, 567
SmlI	CTYRAG	3 cut(s)	753, 883, 1356
SmoI	CTYRAG	3 cut(s)	753, 883, 1356
SsiI	CCGC	5 cut(s)	18, 215, 606, 786, 972
SspMI	CTAG	4 cut(s)	228, 783, 1013, 1059
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	548
TaaI	ACNGT	4 cut(s)	265, 618, 1020, 1236
TaiI	ACGT	1 cut(s)	1338
TaqI	TCGA	2 cut(s)	396, 1423
TatI	WGTACW	2 cut(s)	909, 1238
TauI	GCSGC	2 cut(s)	609, 974
TfiI	GAWTC	1 cut(s)	1439
Tru1I	TTAA	5 cut(s)	702, 1004, 1211, 1230, 1383
Tru9I	TTAA	5 cut(s)	702, 1004, 1211, 1230, 1383
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	851
TspRI	CASTG	1 cut(s)	154
Tth111I	GACNNNGTC	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	7 cut(s)	233, 272, 392, 1084, 1288, 1385, 1409
XbaI	TCTAGA	1 cut(s)	1058
XceI	RCATGY	1 cut(s)	1276
XspI	CTAG	4 cut(s)	228, 783, 1013, 1059
ZraI	GACGTC	1 cut(s)	1336
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.