Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008370

Physical Location & Seq

Genomic Coordinates Reverse (-)

58081380 .. 58084864

Gene Structure 3485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGGGATCAAAATAGGGGGTGAAATAGAGAGGGTGAATGGGAAAGAGATGAGTTACAGTGAGTTTGTGGAGAGGTACATGGAGAAGAACCAGCCTGTGGTGCTGACAGGTCTCATGGATGATTGGAGGGCTTGCAGAGATTGGGTCACCGATGATGGCAACCCCAATCTTCAATTTTTCGCTACCCATTTTGGAAAATCCAAAGTCCAGGTTGCAGATTGCGGTACTAGAGAATACACGGATCAGAAGAGATTAGAAATGACTGTTGGAGAATTTGTTGAGCAATGGCGTGGGGATTCTGTGCAAGAGCATTGTACCGCTCCAAGTCAGGCAGGTGGGAGCAAGATGTTGCTATATTTGAAGGACTGGCATTTTGTAAAGGAGTACCCAGAATATACAGCATACACAACTCCAATGTTCTTTTGTGATGATTGGCTCAACACATATCTTGACAATTATCGTATGCATAACGACCCCAACATTTACTCTGAAAATAATGACATTAGCTGCTCTGACTATCGATTTGTTTACATGGGAGCAAAAGGCACATGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGCTGGTCAGCAAATGTGTGTGGAAAAAAACAGTGGCTTTTCCTGTCTCCTTCTCAAAGTCATCTGGTGTTTGACAGGAATATGAAAAACAGTGTATATAATATCTTTGATGATGTCAGTGAAACAAAATTTCCTGGTTTTGCAAAGGCTATCTGGTTTGAGTGCACTCAAGAACAAAATGACATTATCTTTGTGCCTAGTGGATGGTATCATCAAGTCCATAATTTGGAAGATACCATTTCAATAAACCACAACTGGTTCAATGCTAATAATCTTCATTGGGTGTGGGATTTGCTTTTGAGGGACTACAATGAGGCTAAGGAGTACATAGAAGACATTAAGGAAATATGTGATGATTTTGAAGGGCTCTGCCAGCGCAACCTTGCCACTAATACAGGCATGAACTTCAATGATTTCTTAATATTCCTAGCACGTATTTCCTTTGCCAACTTGATTCAACTTCAGTATCTCAGTAGGAAGAATGGGAATCACACTCAGAATTTATCCCCAATAGCTCAGCATTTCACTTTCAACCTTGTATCAATTCAGAAAATTGCATCCAGTATAAGCTCCTTGCAAGATCGGACAGGAAGTCATGGCTTTTATTTGGATTTTATGGAAACATTAAATGATCCAGGGTTCATTAAACTTTGTGCAGTTTTGAGAAAAACATATGGGATGATACACATGCAACAAAACTGGAATTTTGATACAAAGAAAGCTCGGATAGATGATATGGAGGACTTGGACGTTATAGGAACTTGTAATTCTCAGGTCTATACTCCCAAAGATATTGTAATGTTTATACAGCATGCTCTTGCAGAAAGCAATGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 JmjC

Protein Analysis

475

Amino Acids

55.19

Weight (kDa)

5.15

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	21 - 283	2.4e-24	Cupin-like domain
JmjC	PF02373	176 - 281	1.4e-15	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63080
fragaria_vesca	FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750
malus_domestica	MD14G1175900.v1.1
prunus_persica	Prupe.5G169900_v2.0.a1
pyrus_communis	pycom14g08050 pycom14g14700
rosa_chinensis	RchiOBHm_Chr7g0193061
rosa_laevigata	RLG00000004298
rosa_multiflora	Rmu_ssc0000002.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262410
rosa_rugosa	Rorug07G0007400
rosa_samantha	Rh7AG132500 Rh7BG133400 Rh7CG136500 Rh7DG134400
rosa_wichuraiana	Rw7G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	323
AccB7I	CCANNNNNTGG	2 cut(s)	97, 811
AccBSI	CCGCTC	1 cut(s)	320
AciI	CCGC	2 cut(s)	222, 318
AclWI	GGATC	3 cut(s)	14, 249, 1211
AcsI	RAATTY	4 cut(s)	272, 713, 1084, 1288
AcuI	CTGAAG	1 cut(s)	1031
AfaI	GTAC	5 cut(s)	77, 226, 316, 386, 911
AfiI	CCNNNNNNNGG	2 cut(s)	97, 811
AgsI	TTSAA	8 cut(s)	173, 361, 828, 847, 947, 994, 1043, 1117
AhdI	GACNNNNNGTC	1 cut(s)	1176
AjnI	CCWGG	3 cut(s)	207, 718, 1219
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	5 cut(s)	507, 588, 1100, 1155, 1307
AluI	AGCT	5 cut(s)	507, 588, 1100, 1155, 1307
Alw21I	GWGCWC	1 cut(s)	752
Alw26I	GTCTC	2 cut(s)	116, 636
Alw44I	GTGCAC	1 cut(s)	748
AlwI	GGATC	3 cut(s)	14, 249, 1211
ApaLI	GTGCAC	1 cut(s)	748
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	4 cut(s)	272, 713, 1084, 1288
ArsI	GACNNNNNNTTYG	6 cut(s)	356, 388, 506, 538, 758, 790
AspLEI	GCGC	1 cut(s)	963
AsuHPI	GGTGA	3 cut(s)	32, 46, 139
BaeGI	GKGCMC	1 cut(s)	752
BaeI	ACNNNNGTAYC	2 cut(s)	1034, 1067
BanII	GRGCYC	1 cut(s)	954
BbsI	GAAGAC	1 cut(s)	924
Bbv12I	GWGCWC	1 cut(s)	752
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	2 cut(s)	149, 783
BciT130I	CCWGG	3 cut(s)	209, 720, 1221
BcoDI	GTCTC	2 cut(s)	116, 636
BfaI	CTAG	3 cut(s)	228, 783, 1013
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	1 cut(s)	508
BlpI	GCTNAGC	1 cut(s)	1101
BlsI	GCNGC	1 cut(s)	509
Bme1390I	CCNGG	3 cut(s)	209, 720, 1221
BmeRI	GACNNNNNGTC	1 cut(s)	1176
BmrFI	CCNGG	3 cut(s)	209, 720, 1221
BmsI	GCATC	1 cut(s)	1151
BpiI	GAAGAC	1 cut(s)	924
Bpu10I	CCTNAGC	1 cut(s)	903
Bpu1102I	GCTNAGC	1 cut(s)	1101
BpuEI	CTTGAG	1 cut(s)	738
Bsa29I	ATCGAT	1 cut(s)	520
BsaAI	YACGTR	1 cut(s)	1019
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	1220
BsaXI	ACNNNNNCTCC	4 cut(s)	261, 291, 538, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 811
Bse1I	ACTGG	4 cut(s)	371, 845, 1146, 1289
Bse3DI	GCAATG	2 cut(s)	290, 1420
BseBI	CCWGG	3 cut(s)	209, 720, 1221
BseCI	ATCGAT	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	1220
BseGI	GGATG	4 cut(s)	124, 794, 1142, 1269
BseLI	CCNNNNNNNGG	2 cut(s)	97, 811
BseMI	GCAATG	2 cut(s)	290, 1420
BseMII	CTCAG	4 cut(s)	1069, 1094, 1115, 1370
BseNI	ACTGG	4 cut(s)	371, 845, 1146, 1289
BseRI	GAGGAG	1 cut(s)	546
BseSI	GKGCMC	1 cut(s)	752
BseXI	GCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	1260
BshVI	ATCGAT	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	752
BslFI	GGGAC	1 cut(s)	902
BslI	CCNNNNNNNGG	2 cut(s)	97, 811
BsmAI	GTCTC	2 cut(s)	116, 636
BsmFI	GGGAC	1 cut(s)	902
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	2 cut(s)	752, 954
Bsp143I	GATC	4 cut(s)	6, 241, 1165, 1216
Bsp1720I	GCTNAGC	1 cut(s)	1101
BspACI	CCGC	2 cut(s)	222, 318
BspCNI	CTCAG	4 cut(s)	1068, 1093, 1114, 1369
BspDI	ATCGAT	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	3 cut(s)	14, 249, 1211
BspTNI	GGTCTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	290, 1420
BsrI	ACTGG	4 cut(s)	371, 845, 1146, 1289
BssECI	CCNNGG	1 cut(s)	1220
BssMI	GATC	4 cut(s)	6, 241, 1165, 1216
Bst2UI	CCWGG	3 cut(s)	209, 720, 1221
Bst4CI	ACNGT	4 cut(s)	59, 265, 618, 677
Bst6I	CTCTTC	2 cut(s)	242, 564
BstBAI	YACGTR	1 cut(s)	1019
BstC8I	GCNNGC	3 cut(s)	133, 959, 1398
BstDEI	CTNAG	5 cut(s)	903, 1055, 1080, 1101, 1356
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	4 cut(s)	124, 794, 1142, 1269
BstHHI	GCGC	1 cut(s)	963
BstKTI	GATC	4 cut(s)	9, 244, 1168, 1219
BstMAI	GTCTC	2 cut(s)	116, 636
BstMBI	GATC	4 cut(s)	6, 241, 1165, 1216
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 958
BstNI	CCWGG	3 cut(s)	209, 720, 1221
BstNSI	RCATGY	2 cut(s)	1276, 1400
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	3 cut(s)	207, 718, 1219
BstSLI	GKGCMC	1 cut(s)	752
BstV1I	GCAGC	1 cut(s)	494
BstV2I	GAAGAC	1 cut(s)	924
Bsu15I	ATCGAT	1 cut(s)	520
BsuTUI	ATCGAT	1 cut(s)	520
BtsCI	GGATG	4 cut(s)	124, 794, 1142, 1269
BtsIMutI	CAGTG	4 cut(s)	64, 623, 682, 709
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	3 cut(s)	133, 959, 1398
CfoI	GCGC	1 cut(s)	963
ClaI	ATCGAT	1 cut(s)	520
Csp6I	GTAC	5 cut(s)	76, 225, 315, 385, 910
CviAII	CATG	9 cut(s)	79, 115, 532, 549, 563, 985, 1181, 1273, 1397
CviQI	GTAC	5 cut(s)	76, 225, 315, 385, 910
DdeI	CTNAG	5 cut(s)	903, 1055, 1080, 1101, 1356
DpnI	GATC	4 cut(s)	8, 243, 1167, 1218
DpnII	GATC	4 cut(s)	6, 241, 1165, 1216
DriI	GACNNNNNGTC	1 cut(s)	1176
Eam1104I	CTCTTC	2 cut(s)	242, 564
Eam1105I	GACNNNNNGTC	1 cut(s)	1176
EarI	CTCTTC	2 cut(s)	242, 564
Eco24I	GRGCYC	1 cut(s)	954
Eco31I	GGTCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	1031
Eco91I	GGTNACC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	145
EcoRII	CCWGG	3 cut(s)	207, 718, 1219
EcoT22I	ATGCAT	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	954
FaeI	CATG	9 cut(s)	82, 118, 535, 552, 566, 988, 1184, 1276, 1400
FaqI	GGGAC	1 cut(s)	902
FatI	CATG	9 cut(s)	78, 114, 531, 548, 562, 984, 1180, 1272, 1396
FauNDI	CATATG	1 cut(s)	1258
Fnu4HI	GCNGC	1 cut(s)	508
FokI	GGATG	4 cut(s)	131, 801, 1129, 1276
FriOI	GRGCYC	1 cut(s)	954
Fsp4HI	GCNGC	1 cut(s)	508
FspBI	CTAG	3 cut(s)	228, 783, 1013
GlaI	GCGC	1 cut(s)	962
GluI	GCNGC	1 cut(s)	508
HhaI	GCGC	1 cut(s)	963
Hin1II	CATG	9 cut(s)	82, 118, 535, 552, 566, 988, 1184, 1276, 1400
Hin6I	GCGC	1 cut(s)	961
HinP1I	GCGC	1 cut(s)	961
HinfI	GANTC	4 cut(s)	296, 553, 1039, 1072
HphI	GGTGA	3 cut(s)	32, 46, 139
Hpy166II	GTNNAC	2 cut(s)	529, 750
Hpy188I	TCNGA	7 cut(s)	246, 490, 514, 1083, 1134, 1170, 1311
Hpy188III	TCNNGA	2 cut(s)	449, 755
Hpy8I	GTNNAC	2 cut(s)	529, 750
HpyAV	CCTTC	3 cut(s)	355, 645, 941
HpyCH4III	ACNGT	4 cut(s)	59, 265, 618, 677
HpyCH4IV	ACGT	2 cut(s)	1018, 1335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 958
HpyF3I	CTNAG	5 cut(s)	903, 1055, 1080, 1101, 1356
HpySE526I	ACGT	2 cut(s)	1018, 1335
Hsp92II	CATG	9 cut(s)	82, 118, 535, 552, 566, 988, 1184, 1276, 1400
HspAI	GCGC	1 cut(s)	961
Kzo9I	GATC	4 cut(s)	6, 241, 1165, 1216
LmnI	GCTCC	4 cut(s)	325, 339, 536, 1160
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	1 cut(s)	1151
MaeI	CTAG	3 cut(s)	228, 783, 1013
MaeII	ACGT	2 cut(s)	1018, 1335
MaeIII	GTNAC	2 cut(s)	53, 145
MalI	GATC	4 cut(s)	8, 243, 1167, 1218
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	4 cut(s)	6, 241, 1165, 1216
MboII	GAAGA	8 cut(s)	97, 161, 259, 551, 827, 851, 929, 1075
MhlI	GDGCHC	2 cut(s)	752, 954
MlyI	GAGTC	1 cut(s)	547
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	24, 66, 120, 567, 879, 892, 1318
Mph1103I	ATGCAT	1 cut(s)	468
MseI	TTAA	4 cut(s)	924, 1004, 1211, 1230
MslI	CAYNNNNRTG	1 cut(s)	567
MspR9I	CCNGG	3 cut(s)	209, 720, 1221
MvaI	CCWGG	3 cut(s)	209, 720, 1221
MwoI	GCNNNNNNNGC	2 cut(s)	100, 958
NdeI	CATATG	1 cut(s)	1258
NdeII	GATC	4 cut(s)	6, 241, 1165, 1216
NlaIII	CATG	9 cut(s)	82, 118, 535, 552, 566, 988, 1184, 1276, 1400
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	2 cut(s)	1276, 1400
PaeI	GCATGC	1 cut(s)	1400
PaqCI	CACCTGC	1 cut(s)	323
PfeI	GAWTC	3 cut(s)	296, 1039, 1072
PflMI	CCANNNNNTGG	2 cut(s)	97, 811
PkrI	GCNGC	1 cut(s)	509
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Ppu21I	YACGTR	1 cut(s)	1019
Psp6I	CCWGG	3 cut(s)	207, 718, 1219
PspEI	GGTNACC	1 cut(s)	145
PspGI	CCWGG	3 cut(s)	207, 718, 1219
RsaI	GTAC	5 cut(s)	77, 226, 316, 386, 911
RsaNI	GTAC	5 cut(s)	76, 225, 315, 385, 910
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	4 cut(s)	924, 1004, 1211, 1230
SatI	GCNGC	1 cut(s)	508
Sau3AI	GATC	4 cut(s)	6, 241, 1165, 1216
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	3 cut(s)	209, 720, 1221
SduI	GDGCHC	2 cut(s)	752, 954
SfaNI	GCATC	1 cut(s)	1151
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	753
SmoI	CTYRAG	1 cut(s)	753
SphI	GCATGC	1 cut(s)	1400
SsiI	CCGC	2 cut(s)	222, 318
SspI	AATATT	1 cut(s)	1008
SspMI	CTAG	3 cut(s)	228, 783, 1013
StyD4I	CCNGG	3 cut(s)	207, 718, 1219
TaaI	ACNGT	4 cut(s)	59, 265, 618, 677
TaiI	ACGT	2 cut(s)	1021, 1338
TaqI	TCGA	1 cut(s)	520
TatI	WGTACW	1 cut(s)	909
TfiI	GAWTC	3 cut(s)	296, 1039, 1072
Tru1I	TTAA	4 cut(s)	924, 1004, 1211, 1230
Tru9I	TTAA	4 cut(s)	924, 1004, 1211, 1230
TscAI	CASTG	4 cut(s)	64, 623, 682, 709
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	5 cut(s)	551, 683, 851, 1001, 1216
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	4 cut(s)	64, 623, 682, 709
Van91I	CCANNNNNTGG	2 cut(s)	97, 811
VneI	GTGCAC	1 cut(s)	748
XapI	RAATTY	4 cut(s)	272, 713, 1084, 1288
XceI	RCATGY	2 cut(s)	1276, 1400
XspI	CTAG	3 cut(s)	228, 783, 1013
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.