RchiOBHm_Chr7g0193061

JmjC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008370
Physical Location & Seq
Forward (+)
11485852 .. 11490200
4349 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17262

Sequence Viewer

Length: 1590 bp
ATGTTGGCCGTACCAGTACTGTTTGCCTCGTACTGTAACTCTCTGGGCTGTTCCAGAACGTTCTATGGTGTGTGTCGGCCCAACTCGGCCCGGCCCGGCCCAGACAACCCTCGTTCCTCCCGAAGACTTATCATCACTAAACTCAATTACAGGGGGAAAGAAAATATGGGGATCAAAATAGGGGGTGAAATAGAGAGGGTGAATGGGAAGGAGATGAGTTACAGTGAGTTTGTGGGGAGGTACATGGAGAAGAACCAGCCTGTGGTGCTGACAGGTCTCATGGATGATTGGAGGGCTTGCAGAGATTGGGTCACTGATGATGGCAACCCCAATCTTCAATTTTTCGCTACCCATTTTGGAAAGTCCAAAGTCCAGGTTGCAGATTGCGGTACTAGAGAATACACGGATCAGAAGAGATTAGAAATGACTGTTGGAGAATTTGTTGAGCAATGGCGTGGGGATTCTGTGCAAGAGCATTGTACTGCTCCAAGTCAGGCAAGTGGGAGCAAGATGTTGCTATATTTGAAGGACTGGCATTTTGTAAAGGAGTACCCAGAATATACAGCATACACAACTCCAATGTTCTTTTGTGATGACTGGCTTAACACATATCTTGACAATTATCGTATGCATAACGACCCCAACATTTACTCTGAAAACAATGACATAAGCTGCTCTGACTATCGATTTGTTTACATGGGAGCAAAAGGCACATGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGCTGGTCAGCAAATGTGTGTGGAAAAAAACAGTGGCTTTTCCTGTCTCCTTCTCAAAGTCATCTGGTGTTTGACAGGAATATGAAAAACAGTGTATATAATATCTTTGATGATGTCAGTGAAACAAAATTTCCTGGTTTTGCAAAGGCTATGTGGTTTGAGTGCACTCAAGAGCAAAATGACATTATCTTTGTGCCTAGTGGATGGTATCATCAAGTCCATAATTTGGAAGATACCATTTCAATAAACCACAACTGGTTCAATGCTAATAATCTTCGTTGGGTGTGGGATTTGCTTTTGAGGGACTACGATGAGGCTAAGGAGTACATAGAAGACATTAAGGAAATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAACCTTGCCGCTAATACAGGCTTGAACTTCAATGATTTCTTAATACTCCTAGCACGTCTTTCCTTTGCCAACTTGATTCAACTTCAGTATCTCAGTAGGAAGAATGGGAATCACACTCAGAATTTATCCCCAATAGCTCAGCATTTCACTTTCAACCTTGTATCAATTCAGAAAATTGCATCCAGTATAAGCTCCTTGCAAGATCTGACAGGAAGTCATGGCTTTTATTTGGATTTTAAGGAAACATTAAATGATCCAGGGTTCATTAAACTTTGTGCAGTTTTGGGAAAAACATATGGGACGATACACATGCAACAAAACTGGAATTTTGATACAAAGAAAGCTTGGATAGATGATATGAAAGACTTGGACGTTATAGGAACTTGTAATTCTCAGGTCTGTACTCCCAAAGATCTTGTAATGTTTATACAGCATGCTCTTGCAGAAAGCAATGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_8 JmjC

Protein Analysis

529

Amino Acids

61.03

Weight (kDa)

5.64

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 76 - 338 9.1e-24 Cupin-like domain
JmjC PF02373 231 - 336 1e-15 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 262, 976
AciI CCGC 2 cut(s) 387, 1137
AclI AACGTT 1 cut(s) 59
AclWI GGATC 3 cut(s) 179, 414, 1376
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 4 cut(s) 437, 878, 1249, 1453
AcuI CTGAAG 1 cut(s) 1196
AfaI GTAC 9 cut(s) 12, 18, 32, 242, 391, 481, 551, 1076, 1531
AfiI CCNNNNNNNGG 2 cut(s) 262, 976
AgsI TTSAA 9 cut(s) 338, 526, 993, 1012, 1112, 1153, 1159, 1208, 1282
AhdI GACNNNNNGTC 1 cut(s) 1341
AjiI CACGTC 1 cut(s) 1184
AjnI CCWGG 3 cut(s) 372, 883, 1384
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AluBI AGCT 5 cut(s) 672, 753, 1265, 1320, 1472
AluI AGCT 5 cut(s) 672, 753, 1265, 1320, 1472
Alw21I GWGCWC 1 cut(s) 917
Alw26I GTCTC 3 cut(s) 281, 801, 1121
Alw44I GTGCAC 1 cut(s) 913
AlwI GGATC 3 cut(s) 179, 414, 1376
AoxI GGCC 5 cut(s) 6, 77, 87, 92, 97
ApaLI GTGCAC 1 cut(s) 913
ApeKI GCWGC 1 cut(s) 672
ApoI RAATTY 4 cut(s) 437, 878, 1249, 1453
ArsI GACNNNNNNTTYG 6 cut(s) 521, 553, 671, 703, 923, 955
AspLEI GCGC 1 cut(s) 1128
AspS9I GGNCC 4 cut(s) 78, 88, 93, 98
AsuC2I CCSGG 2 cut(s) 91, 96
AsuHPI GGTGA 2 cut(s) 197, 211
BaeGI GKGCMC 1 cut(s) 917
BaeI ACNNNNGTAYC 2 cut(s) 1199, 1232
BbsI GAAGAC 2 cut(s) 130, 1089
Bbv12I GWGCWC 1 cut(s) 917
BbvI GCAGC 1 cut(s) 659
BccI CCATC 2 cut(s) 314, 948
BcgI CGANNNNNNTGC 2 cut(s) 1420, 1454
BciT130I CCWGG 3 cut(s) 374, 885, 1386
BcnI CCSGG 2 cut(s) 91, 96
BcoDI GTCTC 3 cut(s) 281, 801, 1121
BfaI CTAG 3 cut(s) 393, 948, 1178
BglII AGATCT 2 cut(s) 1330, 1540
BisI GCNGC 2 cut(s) 673, 1137
BlpI GCTNAGC 1 cut(s) 1266
BlsI GCNGC 2 cut(s) 674, 1138
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 5 cut(s) 91, 96, 374, 885, 1386
BmeRI GACNNNNNGTC 1 cut(s) 1341
BmgBI CACGTC 1 cut(s) 1184
BmgT120I GGNCC 4 cut(s) 78, 88, 93, 98
BmrFI CCNGG 5 cut(s) 91, 96, 374, 885, 1386
BmsI GCATC 1 cut(s) 1316
BpiI GAAGAC 2 cut(s) 130, 1089
Bpu10I CCTNAGC 1 cut(s) 1068
Bpu1102I GCTNAGC 1 cut(s) 1266
BpuEI CTTGAG 1 cut(s) 903
BpuMI CCSGG 2 cut(s) 91, 96
Bsa29I ATCGAT 1 cut(s) 685
BsaI GGTCTC 2 cut(s) 281, 1121
BsaJI CCNNGG 1 cut(s) 1385
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 703, 733
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 976
Bse1I ACTGG 6 cut(s) 14, 536, 602, 1010, 1311, 1454
Bse3DI GCAATG 2 cut(s) 455, 1585
BseBI CCWGG 3 cut(s) 374, 885, 1386
BseCI ATCGAT 1 cut(s) 685
BseDI CCNNGG 1 cut(s) 1385
BseGI GGATG 3 cut(s) 289, 959, 1307
BseLI CCNNNNNNNGG 2 cut(s) 262, 976
BseMI GCAATG 2 cut(s) 455, 1585
BseMII CTCAG 4 cut(s) 1234, 1259, 1280, 1535
BseNI ACTGG 6 cut(s) 14, 536, 602, 1010, 1311, 1454
BseRI GAGGAG 1 cut(s) 711
BseSI GKGCMC 1 cut(s) 917
BseXI GCAGC 1 cut(s) 659
BsgI GTGCAG 1 cut(s) 1425
BshFI GGCC 5 cut(s) 8, 79, 89, 94, 99
BshVI ATCGAT 1 cut(s) 685
BsiHKAI GWGCWC 1 cut(s) 917
BsiSI CCGG 2 cut(s) 91, 96
BslFI GGGAC 2 cut(s) 1067, 1441
BslI CCNNNNNNNGG 2 cut(s) 262, 976
BsmAI GTCTC 3 cut(s) 281, 801, 1121
BsmFI GGGAC 2 cut(s) 1067, 1441
BsnI GGCC 5 cut(s) 8, 79, 89, 94, 99
Bso31I GGTCTC 2 cut(s) 281, 1121
Bsp1286I GDGCHC 1 cut(s) 917
Bsp143I GATC 5 cut(s) 171, 406, 1330, 1381, 1540
Bsp1720I GCTNAGC 1 cut(s) 1266
BspACI CCGC 2 cut(s) 387, 1137
BspANI GGCC 5 cut(s) 8, 79, 89, 94, 99
BspCNI CTCAG 4 cut(s) 1233, 1258, 1279, 1534
BspDI ATCGAT 1 cut(s) 685
BspPI GGATC 3 cut(s) 179, 414, 1376
BspTNI GGTCTC 2 cut(s) 281, 1121
BsrDI GCAATG 2 cut(s) 455, 1585
BsrI ACTGG 6 cut(s) 14, 536, 602, 1010, 1311, 1454
BssECI CCNNGG 1 cut(s) 1385
BssMI GATC 5 cut(s) 171, 406, 1330, 1381, 1540
Bst2UI CCWGG 3 cut(s) 374, 885, 1386
Bst4CI ACNGT 6 cut(s) 21, 35, 224, 430, 783, 842
Bst6I CTCTTC 2 cut(s) 407, 729
BstC8I GCNNGC 3 cut(s) 298, 1124, 1563
BstDEI CTNAG 5 cut(s) 1068, 1220, 1245, 1266, 1521
BstF5I GGATG 3 cut(s) 289, 959, 1307
BstHHI GCGC 1 cut(s) 1128
BstKTI GATC 5 cut(s) 174, 409, 1333, 1384, 1543
BstMAI GTCTC 3 cut(s) 281, 801, 1121
BstMBI GATC 5 cut(s) 171, 406, 1330, 1381, 1540
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 3 cut(s) 374, 885, 1386
BstNSI RCATGY 2 cut(s) 1441, 1565
BstSCI CCNGG 5 cut(s) 89, 94, 372, 883, 1384
BstSLI GKGCMC 1 cut(s) 917
BstV1I GCAGC 1 cut(s) 659
BstV2I GAAGAC 2 cut(s) 130, 1089
BstX2I RGATCY 2 cut(s) 1330, 1540
BstYI RGATCY 2 cut(s) 1330, 1540
Bsu15I ATCGAT 1 cut(s) 685
BsuRI GGCC 5 cut(s) 8, 79, 89, 94, 99
BsuTUI ATCGAT 1 cut(s) 685
BtrI CACGTC 1 cut(s) 1184
BtsCI GGATG 3 cut(s) 289, 959, 1307
BtsIMutI CAGTG 5 cut(s) 229, 312, 788, 847, 874
Cac8I GCNNGC 3 cut(s) 298, 1124, 1563
CfoI GCGC 1 cut(s) 1128
Cfr13I GGNCC 4 cut(s) 78, 88, 93, 98
ClaI ATCGAT 1 cut(s) 685
Csp6I GTAC 9 cut(s) 11, 17, 31, 241, 390, 480, 550, 1075, 1530
CviAII CATG 8 cut(s) 244, 280, 697, 714, 728, 1346, 1438, 1562
CviQI GTAC 9 cut(s) 11, 17, 31, 241, 390, 480, 550, 1075, 1530
DdeI CTNAG 5 cut(s) 1068, 1220, 1245, 1266, 1521
DpnI GATC 5 cut(s) 173, 408, 1332, 1383, 1542
DpnII GATC 5 cut(s) 171, 406, 1330, 1381, 1540
DriI GACNNNNNGTC 1 cut(s) 1341
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 407, 729
Eam1105I GACNNNNNGTC 1 cut(s) 1341
EarI CTCTTC 2 cut(s) 407, 729
Eco31I GGTCTC 2 cut(s) 281, 1121
Eco57I CTGAAG 1 cut(s) 1196
EcoRII CCWGG 3 cut(s) 372, 883, 1384
EcoT22I ATGCAT 1 cut(s) 633
FaeI CATG 8 cut(s) 247, 283, 700, 717, 731, 1349, 1441, 1565
FaqI GGGAC 2 cut(s) 1067, 1441
FatI CATG 8 cut(s) 243, 279, 696, 713, 727, 1345, 1437, 1561
FauNDI CATATG 1 cut(s) 1423
Fnu4HI GCNGC 2 cut(s) 673, 1137
FokI GGATG 3 cut(s) 296, 966, 1294
Fsp4HI GCNGC 2 cut(s) 673, 1137
FspBI CTAG 3 cut(s) 393, 948, 1178
GlaI GCGC 1 cut(s) 1127
GluI GCNGC 2 cut(s) 673, 1137
HaeIII GGCC 5 cut(s) 8, 79, 89, 94, 99
HapII CCGG 2 cut(s) 91, 96
HhaI GCGC 1 cut(s) 1128
Hin1II CATG 8 cut(s) 247, 283, 700, 717, 731, 1349, 1441, 1565
Hin6I GCGC 1 cut(s) 1126
HinP1I GCGC 1 cut(s) 1126
HindIII AAGCTT 1 cut(s) 1470
HinfI GANTC 4 cut(s) 461, 718, 1204, 1237
HpaII CCGG 2 cut(s) 91, 96
HphI GGTGA 2 cut(s) 197, 211
Hpy166II GTNNAC 2 cut(s) 694, 915
Hpy188I TCNGA 6 cut(s) 411, 655, 679, 1248, 1299, 1335
Hpy188III TCNNGA 4 cut(s) 54, 120, 614, 920
Hpy8I GTNNAC 2 cut(s) 694, 915
HpyAV CCTTC 4 cut(s) 202, 520, 810, 1106
HpyCH4III ACNGT 6 cut(s) 21, 35, 224, 430, 783, 842
HpyCH4IV ACGT 3 cut(s) 59, 1183, 1500
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 5 cut(s) 1068, 1220, 1245, 1266, 1521
HpySE526I ACGT 3 cut(s) 59, 1183, 1500
Hsp92II CATG 8 cut(s) 247, 283, 700, 717, 731, 1349, 1441, 1565
HspAI GCGC 1 cut(s) 1126
Kzo9I GATC 5 cut(s) 171, 406, 1330, 1381, 1540
LmnI GCTCC 4 cut(s) 490, 504, 701, 1325
Lsp1109I GCAGC 1 cut(s) 659
LweI GCATC 1 cut(s) 1316
MaeI CTAG 3 cut(s) 393, 948, 1178
MaeII ACGT 3 cut(s) 59, 1183, 1500
MaeIII GTNAC 3 cut(s) 35, 218, 310
MalI GATC 5 cut(s) 173, 408, 1332, 1383, 1542
MboI GATC 5 cut(s) 171, 406, 1330, 1381, 1540
MboII GAAGA 9 cut(s) 135, 262, 326, 424, 716, 992, 1016, 1094, 1240
MflI RGATCY 2 cut(s) 1330, 1540
MhlI GDGCHC 1 cut(s) 917
MlyI GAGTC 1 cut(s) 712
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 9 cut(s) 37, 120, 127, 189, 231, 285, 732, 1044, 1057
Mph1103I ATGCAT 1 cut(s) 633
MseI TTAA 6 cut(s) 603, 1089, 1169, 1365, 1376, 1395
MslI CAYNNNNRTG 1 cut(s) 732
MspI CCGG 2 cut(s) 91, 96
MspR9I CCNGG 5 cut(s) 91, 96, 374, 885, 1386
MvaI CCWGG 3 cut(s) 374, 885, 1386
MwoI GCNNNNNNNGC 1 cut(s) 265
NciI CCSGG 2 cut(s) 91, 96
NdeI CATATG 1 cut(s) 1423
NdeII GATC 5 cut(s) 171, 406, 1330, 1381, 1540
NlaIII CATG 8 cut(s) 247, 283, 700, 717, 731, 1349, 1441, 1565
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 633
NspI RCATGY 2 cut(s) 1441, 1565
PaeI GCATGC 1 cut(s) 1565
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PfeI GAWTC 3 cut(s) 461, 1204, 1237
PflMI CCANNNNNTGG 2 cut(s) 262, 976
PkrI GCNGC 2 cut(s) 674, 1138
PleI GAGTC 1 cut(s) 712
PpsI GAGTC 1 cut(s) 712
Psp1406I AACGTT 1 cut(s) 59
Psp6I CCWGG 3 cut(s) 372, 883, 1384
PspGI CCWGG 3 cut(s) 372, 883, 1384
PspPI GGNCC 4 cut(s) 78, 88, 93, 98
PsuI RGATCY 2 cut(s) 1330, 1540
RsaI GTAC 9 cut(s) 12, 18, 32, 242, 391, 481, 551, 1076, 1531
RsaNI GTAC 9 cut(s) 11, 17, 31, 241, 390, 480, 550, 1075, 1530
RseI CAYNNNNRTG 1 cut(s) 732
SaqAI TTAA 6 cut(s) 603, 1089, 1169, 1365, 1376, 1395
SatI GCNGC 2 cut(s) 673, 1137
Sau3AI GATC 5 cut(s) 171, 406, 1330, 1381, 1540
Sau96I GGNCC 4 cut(s) 78, 88, 93, 98
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 712
ScrFI CCNGG 5 cut(s) 91, 96, 374, 885, 1386
SduI GDGCHC 1 cut(s) 917
SfaNI GCATC 1 cut(s) 1316
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 1 cut(s) 918
SmoI CTYRAG 1 cut(s) 918
SphI GCATGC 1 cut(s) 1565
SsiI CCGC 2 cut(s) 387, 1137
SspMI CTAG 3 cut(s) 393, 948, 1178
StyD4I CCNGG 5 cut(s) 89, 94, 372, 883, 1384
TaaI ACNGT 6 cut(s) 21, 35, 224, 430, 783, 842
TaiI ACGT 3 cut(s) 62, 1186, 1503
TaqI TCGA 1 cut(s) 685
TatI WGTACW 4 cut(s) 16, 479, 1074, 1529
TauI GCSGC 1 cut(s) 1139
TfiI GAWTC 3 cut(s) 461, 1204, 1237
Tru1I TTAA 6 cut(s) 603, 1089, 1169, 1365, 1376, 1395
Tru9I TTAA 6 cut(s) 603, 1089, 1169, 1365, 1376, 1395
TscAI CASTG 5 cut(s) 229, 319, 788, 847, 874
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 672
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 4 cut(s) 716, 848, 1381, 1502
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 5 cut(s) 229, 319, 788, 847, 874
Van91I CCANNNNNTGG 2 cut(s) 262, 976
VneI GTGCAC 1 cut(s) 913
XapI RAATTY 4 cut(s) 437, 878, 1249, 1453
XceI RCATGY 2 cut(s) 1441, 1565
XspI CTAG 3 cut(s) 393, 948, 1178
ZrmI AGTACT 1 cut(s) 18
Zsp2I ATGCAT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.