Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008370

Physical Location & Seq

Genomic Coordinates Forward (+)

9957224 .. 9961226

Gene Structure 4003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG133400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGGATCAAAATAGGGGGTGAAATAGAGAGGGTGAATGGGAAAGAGATGAGTTACAGTGAGTTTGTGGAGAGGTACATGGTGAAGAACCAGCCTGTGGTGCTGACAGGTCTCATGGATGATTGGAGGGCCTGCAGAGATTGGGTCACCGATGATGGCAACCCCAATCTTCAATTTTTCGCTACCCATTTTGGAAAATCCAAAGTCCAGGTTGCAGATTGCGGTACTAGAGAATACACGGATCAGAAGAGATTAGAAATGACTGTTGGAGAATTTGTTGAGCAATGGCGTGGGGATTCTGTGCAAGAGCATTGTACCGCTCCAAGTCAGGCAGGTGGGAGCAAGATGTTGCTATATTTGAAGGACTGGCATTTTGTAAAGGAGTACCCAGAATATACAGCATACACAACTCCAGTGTTCTTTTGTGATGATTGGCTTAACACATATCTTGACAATTATCGTATGCATAACGACCCCAACATTTACTCTGAAAATAATGACATAAGCTGCTCTGACTATCGATTTGTTTACATGGGAGCAAAAGGCACATGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGCTGGTCAGCAAATGTGTGTGGAAAAAAACAGTGGCTTTTCCTGTCTCCTTCTCAAAGTCATCTGGTGTTTGACAGGAATATGAAAAACAGTGTATATAATATCTTTGATGATGTCAGTGAAACAAAATTTCCTGGTTTTGCAAAGGCTATCTGGTTTGAGTGCACTCAAGAACAAAATGACATTATCTTTGTGCCTAGTGGATGGTATCATCAAGTCCATAATTTGGAAGATACCATTTCAATAAACCACAACTGGTTCAATGCTAATAATCTTCGTTGGGTGTGGGATTTGCTTTTGAGGGACTACGATGAGGCTAAGGAGTACATAGAAGACATTAAGGAAATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAACCTTGCCGCTAATACAGTTTTGGGAAAAACATATGGGACGATACACATGCAACAAAACTGGAATTTTGATACAAAGAAAGCTTGGATAGATGATATGAAAGACTTGGACGTTATAGGAACTTGTAATTCTCAGGTCTGTACTCCCAAAGATCTTGTAATGTTTATACTGCATGCTCTTGCAGAAAGCAATGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8 JmjC

Protein Analysis

387

Amino Acids

45.12

Weight (kDa)

4.91

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	21 - 283	3.4e-24	Cupin-like domain
JmjC	PF02373	176 - 281	1e-15	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63080
fragaria_vesca	FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750 FvH4_5g05750
malus_domestica	MD14G1175900.v1.1
prunus_persica	Prupe.5G169900_v2.0.a1
pyrus_communis	pycom14g08050 pycom14g14700
rosa_chinensis	RchiOBHm_Chr7g0193061
rosa_laevigata	RLG00000004298
rosa_multiflora	Rmu_ssc0000002.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262410
rosa_rugosa	Rorug07G0007400
rosa_samantha	Rh7AG132500 Rh7BG133400 Rh7CG136500 Rh7DG134400
rosa_wichuraiana	Rw7G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	323
AccB7I	CCANNNNNTGG	2 cut(s)	97, 811
AccBSI	CCGCTC	1 cut(s)	320
AciI	CCGC	3 cut(s)	222, 318, 972
AclWI	GGATC	2 cut(s)	14, 249
AcsI	RAATTY	3 cut(s)	272, 713, 1027
AfaI	GTAC	6 cut(s)	77, 226, 316, 386, 911, 1105
AfiI	CCNNNNNNNGG	2 cut(s)	97, 811
AgsI	TTSAA	5 cut(s)	173, 361, 828, 847, 947
AjnI	CCWGG	2 cut(s)	207, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	3 cut(s)	507, 588, 1046
AluI	AGCT	3 cut(s)	507, 588, 1046
Alw21I	GWGCWC	1 cut(s)	752
Alw26I	GTCTC	3 cut(s)	116, 636, 956
Alw44I	GTGCAC	1 cut(s)	748
AlwI	GGATC	2 cut(s)	14, 249
AoxI	GGCC	1 cut(s)	129
ApaLI	GTGCAC	1 cut(s)	748
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	3 cut(s)	272, 713, 1027
ArsI	GACNNNNNNTTYG	6 cut(s)	356, 388, 506, 538, 758, 790
AspLEI	GCGC	1 cut(s)	963
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	4 cut(s)	32, 46, 94, 139
BaeGI	GKGCMC	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	924
Bbv12I	GWGCWC	1 cut(s)	752
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	2 cut(s)	149, 783
BcgI	CGANNNNNNTGC	2 cut(s)	994, 1028
BciT130I	CCWGG	2 cut(s)	209, 720
BcoDI	GTCTC	3 cut(s)	116, 636, 956
BfaI	CTAG	2 cut(s)	228, 783
BfmI	CTRYAG	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	323
BglII	AGATCT	1 cut(s)	1114
BisI	GCNGC	2 cut(s)	508, 972
BlsI	GCNGC	2 cut(s)	509, 973
Bme1390I	CCNGG	2 cut(s)	209, 720
BmgT120I	GGNCC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	209, 720
BpiI	GAAGAC	1 cut(s)	924
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	903
BpuEI	CTTGAG	1 cut(s)	738
Bsa29I	ATCGAT	1 cut(s)	520
BsaI	GGTCTC	2 cut(s)	116, 956
BsaXI	ACNNNNNCTCC	4 cut(s)	261, 291, 538, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 811
Bse1I	ACTGG	4 cut(s)	371, 413, 845, 1028
Bse3DI	GCAATG	2 cut(s)	290, 1159
BseBI	CCWGG	2 cut(s)	209, 720
BseCI	ATCGAT	1 cut(s)	520
BseGI	GGATG	2 cut(s)	124, 794
BseLI	CCNNNNNNNGG	2 cut(s)	97, 811
BseMI	GCAATG	2 cut(s)	290, 1159
BseMII	CTCAG	1 cut(s)	1109
BseNI	ACTGG	4 cut(s)	371, 413, 845, 1028
BseRI	GAGGAG	1 cut(s)	546
BseSI	GKGCMC	1 cut(s)	752
BseXI	GCAGC	1 cut(s)	494
BshFI	GGCC	1 cut(s)	131
BshVI	ATCGAT	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	752
BslFI	GGGAC	2 cut(s)	902, 1015
BslI	CCNNNNNNNGG	2 cut(s)	97, 811
BsmAI	GTCTC	3 cut(s)	116, 636, 956
BsmFI	GGGAC	2 cut(s)	902, 1015
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	2 cut(s)	116, 956
Bsp1286I	GDGCHC	1 cut(s)	752
Bsp143I	GATC	3 cut(s)	6, 241, 1114
BspACI	CCGC	3 cut(s)	222, 318, 972
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	1108
BspDI	ATCGAT	1 cut(s)	520
BspMAI	CTGCAG	1 cut(s)	137
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	2 cut(s)	14, 249
BspTNI	GGTCTC	2 cut(s)	116, 956
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	290, 1159
BsrI	ACTGG	4 cut(s)	371, 413, 845, 1028
BssMI	GATC	3 cut(s)	6, 241, 1114
Bst2UI	CCWGG	2 cut(s)	209, 720
Bst4CI	ACNGT	5 cut(s)	59, 265, 618, 677, 982
Bst6I	CTCTTC	2 cut(s)	242, 564
BstC8I	GCNNGC	3 cut(s)	133, 959, 1137
BstDEI	CTNAG	2 cut(s)	903, 1095
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	124, 794
BstHHI	GCGC	1 cut(s)	963
BstKTI	GATC	3 cut(s)	9, 244, 1117
BstMAI	GTCTC	3 cut(s)	116, 636, 956
BstMBI	GATC	3 cut(s)	6, 241, 1114
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	209, 720
BstNSI	RCATGY	2 cut(s)	1015, 1139
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	207, 718
BstSFI	CTRYAG	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	752
BstV1I	GCAGC	1 cut(s)	494
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	1 cut(s)	1114
BstYI	RGATCY	1 cut(s)	1114
Bsu15I	ATCGAT	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	131
BsuTUI	ATCGAT	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	124, 794
BtsIMutI	CAGTG	5 cut(s)	64, 420, 623, 682, 709
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	3 cut(s)	133, 959, 1137
CfoI	GCGC	1 cut(s)	963
Cfr13I	GGNCC	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	520
Csp6I	GTAC	6 cut(s)	76, 225, 315, 385, 910, 1104
CviAII	CATG	7 cut(s)	79, 115, 532, 549, 563, 1012, 1136
CviJI	RGCY	9 cut(s)	94, 131, 436, 507, 588, 622, 734, 902, 1046
CviKI_1	RGCY	9 cut(s)	94, 131, 436, 507, 588, 622, 734, 902, 1046
CviQI	GTAC	6 cut(s)	76, 225, 315, 385, 910, 1104
DdeI	CTNAG	2 cut(s)	903, 1095
DpnI	GATC	3 cut(s)	8, 243, 1116
DpnII	GATC	3 cut(s)	6, 241, 1114
Eam1104I	CTCTTC	2 cut(s)	242, 564
EarI	CTCTTC	2 cut(s)	242, 564
Eco31I	GGTCTC	2 cut(s)	116, 956
Eco91I	GGTNACC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	129
EcoO65I	GGTNACC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	207, 718
EcoT22I	ATGCAT	1 cut(s)	468
FaeI	CATG	7 cut(s)	82, 118, 535, 552, 566, 1015, 1139
FaqI	GGGAC	2 cut(s)	902, 1015
FatI	CATG	7 cut(s)	78, 114, 531, 548, 562, 1011, 1135
FauNDI	CATATG	1 cut(s)	997
Fnu4HI	GCNGC	2 cut(s)	508, 972
FokI	GGATG	2 cut(s)	131, 801
Fsp4HI	GCNGC	2 cut(s)	508, 972
FspBI	CTAG	2 cut(s)	228, 783
GlaI	GCGC	1 cut(s)	962
GluI	GCNGC	2 cut(s)	508, 972
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	963
Hin1II	CATG	7 cut(s)	82, 118, 535, 552, 566, 1015, 1139
Hin6I	GCGC	1 cut(s)	961
HinP1I	GCGC	1 cut(s)	961
HindIII	AAGCTT	1 cut(s)	1044
HinfI	GANTC	2 cut(s)	296, 553
HphI	GGTGA	4 cut(s)	32, 46, 94, 139
Hpy166II	GTNNAC	2 cut(s)	529, 750
Hpy188I	TCNGA	3 cut(s)	246, 490, 514
Hpy188III	TCNNGA	2 cut(s)	449, 755
Hpy8I	GTNNAC	2 cut(s)	529, 750
HpyAV	CCTTC	3 cut(s)	355, 645, 941
HpyCH4III	ACNGT	5 cut(s)	59, 265, 618, 677, 982
HpyCH4IV	ACGT	1 cut(s)	1074
HpyCH4V	TGCA	9 cut(s)	135, 215, 304, 466, 728, 750, 1015, 1135, 1145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	903, 1095
HpySE526I	ACGT	1 cut(s)	1074
Hsp92II	CATG	7 cut(s)	82, 118, 535, 552, 566, 1015, 1139
HspAI	GCGC	1 cut(s)	961
Kzo9I	GATC	3 cut(s)	6, 241, 1114
LmnI	GCTCC	3 cut(s)	325, 339, 536
Lsp1109I	GCAGC	1 cut(s)	494
MaeI	CTAG	2 cut(s)	228, 783
MaeII	ACGT	1 cut(s)	1074
MaeIII	GTNAC	2 cut(s)	53, 145
MalI	GATC	3 cut(s)	8, 243, 1116
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	3 cut(s)	6, 241, 1114
MboII	GAAGA	7 cut(s)	97, 161, 259, 551, 827, 851, 929
MflI	RGATCY	1 cut(s)	1114
MhlI	GDGCHC	1 cut(s)	752
MluCI	AATT	7 cut(s)	173, 272, 454, 713, 808, 1027, 1090
MlyI	GAGTC	1 cut(s)	547
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	6 cut(s)	24, 66, 120, 567, 879, 892
Mph1103I	ATGCAT	1 cut(s)	468
MseI	TTAA	2 cut(s)	438, 924
MslI	CAYNNNNRTG	1 cut(s)	567
MspR9I	CCNGG	2 cut(s)	209, 720
MvaI	CCWGG	2 cut(s)	209, 720
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	3 cut(s)	6, 241, 1114
NlaIII	CATG	7 cut(s)	82, 118, 535, 552, 566, 1015, 1139
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	2 cut(s)	1015, 1139
PaeI	GCATGC	1 cut(s)	1139
PaqCI	CACCTGC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	296
PflMI	CCANNNNNTGG	2 cut(s)	97, 811
PkrI	GCNGC	2 cut(s)	509, 973
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Psp6I	CCWGG	2 cut(s)	207, 718
PspEI	GGTNACC	1 cut(s)	145
PspGI	CCWGG	2 cut(s)	207, 718
PspPI	GGNCC	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	1114
RsaI	GTAC	6 cut(s)	77, 226, 316, 386, 911, 1105
RsaNI	GTAC	6 cut(s)	76, 225, 315, 385, 910, 1104
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	438, 924
SatI	GCNGC	2 cut(s)	508, 972
Sau3AI	GATC	3 cut(s)	6, 241, 1114
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	2 cut(s)	209, 720
SduI	GDGCHC	1 cut(s)	752
SfcI	CTRYAG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	753
SmoI	CTYRAG	1 cut(s)	753
SphI	GCATGC	1 cut(s)	1139
Sse9I	AATT	7 cut(s)	173, 272, 454, 713, 808, 1027, 1090
SsiI	CCGC	3 cut(s)	222, 318, 972
SspMI	CTAG	2 cut(s)	228, 783
StyD4I	CCNGG	2 cut(s)	207, 718
TaaI	ACNGT	5 cut(s)	59, 265, 618, 677, 982
TaiI	ACGT	1 cut(s)	1077
TaqI	TCGA	1 cut(s)	520
TasI	AATT	7 cut(s)	173, 272, 454, 713, 808, 1027, 1090
TatI	WGTACW	2 cut(s)	909, 1103
TauI	GCSGC	1 cut(s)	974
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	438, 924
Tru9I	TTAA	2 cut(s)	438, 924
TscAI	CASTG	5 cut(s)	64, 420, 623, 682, 709
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	3 cut(s)	551, 683, 1076
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	5 cut(s)	64, 420, 623, 682, 709
Van91I	CCANNNNNTGG	2 cut(s)	97, 811
VneI	GTGCAC	1 cut(s)	748
XapI	RAATTY	3 cut(s)	272, 713, 1027
XceI	RCATGY	2 cut(s)	1015, 1139
XspI	CTAG	2 cut(s)	228, 783
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.