Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010564

Physical Location & Seq

Genomic Coordinates Reverse (-)

3610281 .. 3612910

Gene Structure 2630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAAGGCGATGATAGTTATGTTCCGGTGGAAGCTAAGGATTTTTATAAGGACTATAGTCCTAAAAGGACTTTCTCGCCGGAGATTGTGGAGTTGGGAGGGGAAATCACAAGTACAAGTGCTATCACTGCAGGCAGCAGTAGTAGAGATATTGCAGGTGTCAATGATGTTTATGTAGCTGTTGGTAAAGATGACACTGATGTTCTGAAATGGGTGCTTGATAATGCTGTTTCTCCTGGTTCTCGGGTTTTTCTTGTCCATGTCTTCCCTCCAATCACTCACATCCCTACACCAGTTGGAAGATTATCAACTAGCCATTTAAGTCAAGATCAAGTAAGATTTTACATCAATGAAGAGAACAATAAGAGGAGGAACCTCTTGCAGAAATATGTCTATTTATGCAACAATGCTAAGGTAACAGTAGACACAATGCTCCTGGAGAGCAGTGACAGAGCAAAAGCAATTGCCGATCTCATACCAGTTCTAATGATTTCTCACCTTGTCATAGGAACCAAAAGACCACCTCATTCAAGGAAGAAGAAAAAGTTATCACTAGGAGAATTTGTTAGGAAAAATGCACCCGAGTATTGTGAGGTTAGCATCGTTCATCAAGGCAATAAGGTCATGGTTGATGAACAAATAGCTACTTCCCAGAGGCGTCCCCAATGCGAAAGAAGCATCTACGAGTGGGCATGCTTTCCAGGCAAGTTTATAAGTACTTTCAGTGAAGAAGTTTATATGCAGTACGAGGAAAAAATCCCCGGATGTCTTAAGCAGCAGCAGCACTCACACCGCCATAGTTACATGAAACAAACGCTTCGATGGATTATGGACATTGAAGGACAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

284

Amino Acids

32.27

Weight (kDa)

8.17

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06120 FvH4_5g06120 FvH4_5g06120 FvH4_5g06120
malus_domestica	MD06G1166500.v1.1 MD14G1172200.v1.1
prunus_persica	Prupe.5G166500_v2.0.a1 Prupe.5G166500_v2.0.a1
pyrus_communis	pycom06g14920
rosa_chinensis	RchiOBHm_Chr7g0192691
rosa_laevigata	RLG00000004336
rosa_multiflora	Rmu_sc0002040.1_g000010 Rmu_sc0002040.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262740
rosa_rugosa	Rorug07G0003900 Rorug07G0004000
rosa_samantha	Rh7AG128900 Rh7BG130400 Rh7CG133800 Rh7DG131200
rosa_wichuraiana	Rw7G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	48, 713
AarI	CACCTGC	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	1 cut(s)	793
AcsI	RAATTY	1 cut(s)	560
AcyI	GRCGYC	1 cut(s)	658
AfaI	GTAC	3 cut(s)	115, 718, 746
AflII	CTTAAG	1 cut(s)	770
AgsI	TTSAA	2 cut(s)	531, 839
AjnI	CCWGG	3 cut(s)	235, 435, 700
AluBI	AGCT	3 cut(s)	35, 179, 644
AluI	AGCT	3 cut(s)	35, 179, 644
Ama87I	CYCGRG	2 cut(s)	243, 581
ApeKI	GCWGC	4 cut(s)	135, 775, 778, 781
ApoI	RAATTY	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	762
AsuHPI	GGTGA	1 cut(s)	488
AvaI	CYCGRG	2 cut(s)	243, 581
BbsI	GAAGAC	1 cut(s)	256
BbvI	GCAGC	4 cut(s)	147, 787, 790, 793
BccI	CCATC	1 cut(s)	816
BciT130I	CCWGG	3 cut(s)	237, 437, 702
BcnI	CCSGG	1 cut(s)	762
BfaI	CTAG	2 cut(s)	312, 554
BfmI	CTRYAG	2 cut(s)	55, 129
BfrI	CTTAAG	1 cut(s)	770
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	4 cut(s)	136, 776, 779, 782
BlsI	GCNGC	4 cut(s)	137, 777, 780, 783
BmcAI	AGTACT	1 cut(s)	718
Bme1390I	CCNGG	4 cut(s)	237, 437, 702, 762
BmeT110I	CYCGRG	2 cut(s)	243, 581
BmiI	GGNNCC	2 cut(s)	374, 511
BmrFI	CCNGG	4 cut(s)	237, 437, 702, 762
BmsI	GCATC	2 cut(s)	609, 687
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	458
Bpu10I	CCTNAGC	2 cut(s)	36, 411
BpuMI	CCSGG	1 cut(s)	762
BsaHI	GRCGYC	1 cut(s)	658
BsaJI	CCNNGG	1 cut(s)	760
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bse1I	ACTGG	2 cut(s)	293, 479
BseBI	CCWGG	3 cut(s)	237, 437, 702
BseDI	CCNNGG	1 cut(s)	760
BseGI	GGATG	2 cut(s)	282, 770
BseNI	ACTGG	2 cut(s)	293, 479
BseRI	GAGGAG	1 cut(s)	382
BseXI	GCAGC	4 cut(s)	147, 787, 790, 793
BsiHKCI	CYCGRG	2 cut(s)	243, 581
BsiSI	CCGG	3 cut(s)	26, 80, 762
BslFI	GGGAC	1 cut(s)	645
BsmFI	GGGAC	1 cut(s)	645
BsoBI	CYCGRG	2 cut(s)	243, 581
Bsp143I	GATC	2 cut(s)	328, 469
BspACI	CCGC	1 cut(s)	793
BspLI	GGNNCC	2 cut(s)	374, 511
BspMAI	CTGCAG	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	770
BsrI	ACTGG	2 cut(s)	293, 479
BssECI	CCNNGG	1 cut(s)	760
BssMI	GATC	2 cut(s)	328, 469
BssNI	GRCGYC	1 cut(s)	658
Bst2UI	CCWGG	3 cut(s)	237, 437, 702
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	658
BstAFI	CTTAAG	1 cut(s)	770
BstC8I	GCNNGC	2 cut(s)	133, 694
BstDEI	CTNAG	2 cut(s)	36, 411
BstF5I	GGATG	2 cut(s)	282, 770
BstKTI	GATC	2 cut(s)	331, 472
BstMBI	GATC	2 cut(s)	328, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 675, 702, 781
BstNI	CCWGG	3 cut(s)	237, 437, 702
BstNSI	RCATGY	1 cut(s)	696
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSCI	CCNGG	4 cut(s)	235, 435, 700, 760
BstSFI	CTRYAG	2 cut(s)	55, 129
BstV1I	GCAGC	4 cut(s)	147, 787, 790, 793
BstV2I	GAAGAC	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	282, 770
BtsI	GCAGTG	2 cut(s)	126, 451
BtsIMutI	CAGTG	4 cut(s)	126, 195, 451, 730
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	133, 694
CseI	GACGC	1 cut(s)	647
Csp6I	GTAC	3 cut(s)	114, 717, 745
CviAII	CATG	4 cut(s)	260, 625, 693, 805
CviJI	RGCY	4 cut(s)	35, 179, 315, 644
CviKI_1	RGCY	4 cut(s)	35, 179, 315, 644
CviQI	GTAC	3 cut(s)	114, 717, 745
DdeI	CTNAG	2 cut(s)	36, 411
DpnI	GATC	2 cut(s)	330, 471
DpnII	GATC	2 cut(s)	328, 469
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco88I	CYCGRG	2 cut(s)	243, 581
EcoRII	CCWGG	3 cut(s)	235, 435, 700
FaeI	CATG	4 cut(s)	263, 628, 696, 808
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	4 cut(s)	259, 624, 692, 804
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	4 cut(s)	136, 776, 779, 782
FokI	GGATG	2 cut(s)	269, 777
Fsp4HI	GCNGC	4 cut(s)	136, 776, 779, 782
FspBI	CTAG	2 cut(s)	312, 554
GluI	GCNGC	4 cut(s)	136, 776, 779, 782
GsuI	CTGGAG	1 cut(s)	458
HapII	CCGG	3 cut(s)	26, 80, 762
HgaI	GACGC	1 cut(s)	647
Hin1I	GRCGYC	1 cut(s)	658
Hin1II	CATG	4 cut(s)	263, 628, 696, 808
HpaII	CCGG	3 cut(s)	26, 80, 762
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	833
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	6 cut(s)	131, 155, 382, 402, 578, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 675, 702, 781
HpyF3I	CTNAG	2 cut(s)	36, 411
Hsp92I	GRCGYC	1 cut(s)	658
Hsp92II	CATG	4 cut(s)	263, 628, 696, 808
Kzo9I	GATC	2 cut(s)	328, 469
LmnI	GCTCC	1 cut(s)	438
Lsp1109I	GCAGC	4 cut(s)	147, 787, 790, 793
LweI	GCATC	2 cut(s)	609, 687
MaeI	CTAG	2 cut(s)	312, 554
MaeIII	GTNAC	3 cut(s)	415, 446, 800
MalI	GATC	2 cut(s)	330, 471
MboI	GATC	2 cut(s)	328, 469
MboII	GAAGA	6 cut(s)	256, 312, 365, 547, 550, 740
MfeI	CAATTG	1 cut(s)	462
MluCI	AATT	2 cut(s)	462, 560
MmeI	TCCRAC	1 cut(s)	277
MseI	TTAA	2 cut(s)	320, 771
MspCI	CTTAAG	1 cut(s)	770
MspI	CCGG	3 cut(s)	26, 80, 762
MspR9I	CCNGG	4 cut(s)	237, 437, 702, 762
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	3 cut(s)	237, 437, 702
MwoI	GCNNNNNNNGC	4 cut(s)	128, 675, 702, 781
NciI	CCSGG	1 cut(s)	762
NdeII	GATC	2 cut(s)	328, 469
NlaIII	CATG	4 cut(s)	263, 628, 696, 808
NlaIV	GGNNCC	2 cut(s)	374, 511
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	696
PaeI	GCATGC	1 cut(s)	696
PaqCI	CACCTGC	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	4 cut(s)	137, 777, 780, 783
PshAI	GACNNNNGTC	1 cut(s)	57
PsiI	TTATAA	2 cut(s)	48, 713
Psp6I	CCWGG	3 cut(s)	235, 435, 700
PspGI	CCWGG	3 cut(s)	235, 435, 700
PspN4I	GGNNCC	2 cut(s)	374, 511
PstI	CTGCAG	1 cut(s)	133
RsaI	GTAC	3 cut(s)	115, 718, 746
RsaNI	GTAC	3 cut(s)	114, 717, 745
SaqAI	TTAA	2 cut(s)	320, 771
SatI	GCNGC	4 cut(s)	136, 776, 779, 782
Sau3AI	GATC	2 cut(s)	328, 469
ScaI	AGTACT	1 cut(s)	718
ScrFI	CCNGG	4 cut(s)	237, 437, 702, 762
SfaNI	GCATC	2 cut(s)	609, 687
SfcI	CTRYAG	2 cut(s)	55, 129
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SphI	GCATGC	1 cut(s)	696
Sse9I	AATT	2 cut(s)	462, 560
SsiI	CCGC	1 cut(s)	793
SspMI	CTAG	2 cut(s)	312, 554
StyD4I	CCNGG	4 cut(s)	235, 435, 700, 760
TaaI	ACNGT	1 cut(s)	421
TaqI	TCGA	1 cut(s)	820
TasI	AATT	2 cut(s)	462, 560
TatI	WGTACW	2 cut(s)	113, 716
Tru1I	TTAA	2 cut(s)	320, 771
Tru9I	TTAA	2 cut(s)	320, 771
TscAI	CASTG	4 cut(s)	133, 202, 451, 730
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	4 cut(s)	135, 775, 778, 781
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	4 cut(s)	366, 596, 648, 821
TspRI	CASTG	4 cut(s)	133, 202, 451, 730
Vha464I	CTTAAG	1 cut(s)	770
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	1 cut(s)	696
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	2 cut(s)	312, 554
ZrmI	AGTACT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.