Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010564

Physical Location & Seq

Genomic Coordinates Forward (+)

26611885 .. 26612778

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1172200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTACGCCTCGATGGAAGACGAAGATTTTGTTCCAGTGGAAGCCAAGGATTTTTACAAGACTTACATTAAAGCAGGCGCGTTGTCACCGGAGATTGTGGTGAATCTGGAGATACAGGAAGAGGATAGCATGAGTACTAGTGTCACAGAAAGTACTAGCAAAGATGTAGTCCTCAACGATGTTTATGTTGCAGTTGGCAAAGATGACACAGATGTCCTGAAATGGACGCTTGACAATTCTGCTTCCCTTGGTAGTACTCGGGTTTTTCTTGTCCACTTCTTCCCTCCGATCAGCCACATCCCTACACCCGGTACACTAGTAACGGTGGAGACAATGCTAATTGAGACCAATTGCACATCAAAACTAATTCTTGATCTTATTCCTGTTCTTAGCATTACTCACCTTGTCATAGGAATAAAAAGGCATTCAAGGTGCGCAGCAGCATGCGCCAGTTATTTCATTTCCCCGACGAATTTTAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

162

Amino Acids

17.76

Weight (kDa)

4.7

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06120 FvH4_5g06120 FvH4_5g06120 FvH4_5g06120
malus_domestica	MD06G1166500.v1.1 MD14G1172200.v1.1
prunus_persica	Prupe.5G166500_v2.0.a1 Prupe.5G166500_v2.0.a1
pyrus_communis	pycom06g14920
rosa_chinensis	RchiOBHm_Chr7g0192691
rosa_laevigata	RLG00000004336
rosa_multiflora	Rmu_sc0002040.1_g000010 Rmu_sc0002040.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262740
rosa_rugosa	Rorug07G0003900 Rorug07G0004000
rosa_samantha	Rh7AG128900 Rh7BG130400 Rh7CG133800 Rh7DG131200
rosa_wichuraiana	Rw7G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
Acc16I	TGCGCA	1 cut(s)	436
AccII	CGCG	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	5 cut(s)	5, 136, 154, 256, 313
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	429
AhlI	ACTAGT	2 cut(s)	137, 316
Alw26I	GTCTC	2 cut(s)	323, 338
Ama87I	CYCGRG	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	437, 440
ApoI	RAATTY	1 cut(s)	472
ArsI	GACNNNNNNTTYG	4 cut(s)	11, 43, 153, 185
AspLEI	GCGC	3 cut(s)	80, 437, 449
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	3 cut(s)	78, 112, 392
AvaI	CYCGRG	1 cut(s)	258
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	449, 452
BccI	CCATC	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	323, 338
BcuI	ACTAGT	2 cut(s)	137, 316
BfaI	CTAG	3 cut(s)	138, 156, 317
BisI	GCNGC	2 cut(s)	438, 441
BlsI	GCNGC	2 cut(s)	439, 442
BmcAI	AGTACT	3 cut(s)	136, 154, 256
Bme1390I	CCNGG	1 cut(s)	309
BmeT110I	CYCGRG	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	45, 247
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	2 cut(s)	35, 450
BseDI	CCNNGG	2 cut(s)	45, 247
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	35, 450
BseXI	GCAGC	2 cut(s)	449, 452
Bsh1236I	CGCG	1 cut(s)	80
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	89, 309
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	2 cut(s)	323, 338
BsmI	GAATGC	1 cut(s)	424
Bso31I	GGTCTC	1 cut(s)	338
BsoBI	CYCGRG	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	288, 373
BspFNI	CGCG	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	35, 450
BssECI	CCNNGG	2 cut(s)	45, 247
BssMI	GATC	2 cut(s)	288, 373
BssT1I	CCWWGG	2 cut(s)	45, 247
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	76, 445
BstDEI	CTNAG	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	3 cut(s)	80, 437, 449
BstKTI	GATC	2 cut(s)	291, 376
BstMAI	GTCTC	2 cut(s)	323, 338
BstMBI	GATC	2 cut(s)	288, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	307
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	449, 452
BstV2I	GAAGAC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	76, 445
CfoI	GCGC	3 cut(s)	80, 437, 449
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	5 cut(s)	4, 135, 153, 255, 312
CviAII	CATG	2 cut(s)	130, 444
CviJI	RGCY	2 cut(s)	44, 294
CviKI_1	RGCY	2 cut(s)	44, 294
CviQI	GTAC	5 cut(s)	4, 135, 153, 255, 312
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	2 cut(s)	290, 375
DpnII	GATC	2 cut(s)	288, 373
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	45, 247
Eco31I	GGTCTC	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	258
EcoT14I	CCWWGG	2 cut(s)	45, 247
ErhI	CCWWGG	2 cut(s)	45, 247
FaeI	CATG	2 cut(s)	133, 447
FaiI	YATR	4 cut(s)	131, 186, 410, 445
FatI	CATG	2 cut(s)	129, 443
Fnu4HI	GCNGC	2 cut(s)	438, 441
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	438, 441
FspBI	CTAG	3 cut(s)	138, 156, 317
FspI	TGCGCA	1 cut(s)	436
GlaI	GCGC	3 cut(s)	79, 436, 448
GluI	GCNGC	2 cut(s)	438, 441
GsuI	CTGGAG	1 cut(s)	128
HapII	CCGG	2 cut(s)	89, 309
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	3 cut(s)	80, 437, 449
Hin1II	CATG	2 cut(s)	133, 447
Hin6I	GCGC	3 cut(s)	78, 435, 447
HinP1I	GCGC	3 cut(s)	78, 435, 447
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	89, 309
HphI	GGTGA	3 cut(s)	78, 112, 392
Hpy166II	GTNNAC	2 cut(s)	274, 314
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	3 cut(s)	107, 217, 371
Hpy8I	GTNNAC	2 cut(s)	274, 314
Hpy99I	CGWCG	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	191, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	1 cut(s)	389
Hsp92II	CATG	2 cut(s)	133, 447
HspAI	GCGC	3 cut(s)	78, 435, 447
Kzo9I	GATC	2 cut(s)	288, 373
LpnPI	CCDG	9 cut(s)	48, 60, 92, 101, 102, 230, 322, 396, 463
Lsp1109I	GCAGC	2 cut(s)	449, 452
MaeI	CTAG	3 cut(s)	138, 156, 317
MaeIII	GTNAC	3 cut(s)	84, 142, 319
MalI	GATC	2 cut(s)	290, 375
MboI	GATC	2 cut(s)	288, 373
MboII	GAAGA	4 cut(s)	29, 35, 131, 271
MfeI	CAATTG	1 cut(s)	349
MluCI	AATT	5 cut(s)	235, 339, 349, 366, 472
MnlI	CCTC	4 cut(s)	19, 115, 182, 294
MseI	TTAA	2 cut(s)	69, 484
MspI	CCGG	2 cut(s)	89, 309
MspR9I	CCNGG	1 cut(s)	309
MunI	CAATTG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	424
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	446
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	288, 373
NlaIII	CATG	2 cut(s)	133, 447
NmuCI	GTSAC	2 cut(s)	84, 142
NsbI	TGCGCA	1 cut(s)	436
NspI	RCATGY	1 cut(s)	447
PaeI	GCATGC	1 cut(s)	447
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	439, 442
RsaI	GTAC	5 cut(s)	5, 136, 154, 256, 313
RsaNI	GTAC	5 cut(s)	4, 135, 153, 255, 312
SaqAI	TTAA	2 cut(s)	69, 484
SatI	GCNGC	2 cut(s)	438, 441
Sau3AI	GATC	2 cut(s)	288, 373
ScaI	AGTACT	3 cut(s)	136, 154, 256
ScrFI	CCNGG	1 cut(s)	309
SetI	ASST	2 cut(s)	405, 434
SpeI	ACTAGT	2 cut(s)	137, 316
SphI	GCATGC	1 cut(s)	447
Sse9I	AATT	5 cut(s)	235, 339, 349, 366, 472
SspMI	CTAG	3 cut(s)	138, 156, 317
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	2 cut(s)	45, 247
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	11
TasI	AATT	5 cut(s)	235, 339, 349, 366, 472
TatI	WGTACW	3 cut(s)	134, 152, 254
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	69, 484
Tru9I	TTAA	2 cut(s)	69, 484
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	84, 142
TseI	GCWGC	2 cut(s)	437, 440
Tsp45I	GTSAC	2 cut(s)	84, 142
TspDTI	ATGAA	1 cut(s)	448
TspRI	CASTG	1 cut(s)	42
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	447
XspI	CTAG	3 cut(s)	138, 156, 317
ZrmI	AGTACT	3 cut(s)	136, 154, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.