Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002040.1

Orthogroup ID

OG0010564

Physical Location & Seq

Genomic Coordinates Forward (+)

36185 .. 37112

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002040.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgagccaattaagtgaagatcaagtgagattttacgtcaatgaagagaataataagaggaagaacctcttgcagaaatacgtctgcttatgcaacaatgttaaggtaacagtggacacaatgctcctggagagcagcgacagaacaaaagcaatcactgatcttctgtccgttcttaggatcactcaccttgtcataggaaccaaaagagcacctcattcaaggttaaattatgttgttcatccgatcaggaggaaaaaattatcactaggagaatttgttaggaaaagtgcacctgggtattgtcaggttagcatcattcataaaggcaataagtgcgtgggaaaaatcccaggatgtcttaagcagcagcagcaccaacaatggtggtcacaccgccacggttacctgaaacaaatgcgccgatggactatggacatgaaaggccagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

151

Amino Acids

17.7

Weight (kDa)

10.14

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06120 FvH4_5g06120 FvH4_5g06120 FvH4_5g06120
malus_domestica	MD06G1166500.v1.1 MD14G1172200.v1.1
prunus_persica	Prupe.5G166500_v2.0.a1 Prupe.5G166500_v2.0.a1
pyrus_communis	pycom06g14920
rosa_chinensis	RchiOBHm_Chr7g0192691
rosa_laevigata	RLG00000004336
rosa_multiflora	Rmu_sc0002040.1_g000010 Rmu_sc0002040.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262740
rosa_rugosa	Rorug07G0003900 Rorug07G0004000
rosa_samantha	Rh7AG128900 Rh7BG130400 Rh7CG133800 Rh7DG131200
rosa_wichuraiana	Rw7G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	177
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	222
AjnI	CCWGG	3 cut(s)	126, 295, 352
Alw21I	GWGCWC	2 cut(s)	214, 295
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	445
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	4 cut(s)	135, 367, 370, 373
ApoI	RAATTY	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	423
AsuHPI	GGTGA	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	295
Bbv12I	GWGCWC	2 cut(s)	214, 295
BbvI	GCAGC	4 cut(s)	147, 379, 382, 385
BccI	CCATC	1 cut(s)	420
BciT130I	CCWGG	3 cut(s)	128, 297, 354
BfaI	CTAG	1 cut(s)	269
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	4 cut(s)	136, 368, 371, 374
BlsI	GCNGC	4 cut(s)	137, 369, 372, 375
Bme1390I	CCNGG	3 cut(s)	128, 297, 354
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	3 cut(s)	128, 297, 354
BmsI	GCATC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	296, 352, 400
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	128, 297, 354
BseDI	CCNNGG	3 cut(s)	296, 352, 400
BseGI	GGATG	2 cut(s)	241, 362
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	4 cut(s)	147, 379, 382, 385
BshFI	GGCC	1 cut(s)	447
BsiHKAI	GWGCWC	2 cut(s)	214, 295
BslI	CCNNNNNNNGG	1 cut(s)	177
BsnI	GGCC	1 cut(s)	447
Bsp1286I	GDGCHC	2 cut(s)	214, 295
Bsp143I	GATC	4 cut(s)	19, 160, 180, 246
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	188
BspTI	CTTAAG	1 cut(s)	362
BssECI	CCNNGG	3 cut(s)	296, 352, 400
BssMI	GATC	4 cut(s)	19, 160, 180, 246
Bst2UI	CCWGG	3 cut(s)	128, 297, 354
Bst4CI	ACNGT	2 cut(s)	112, 404
Bst6I	CTCTTC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	400
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	2 cut(s)	241, 362
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	4 cut(s)	22, 163, 183, 249
BstMBI	GATC	4 cut(s)	19, 160, 180, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 373
BstNI	CCWGG	3 cut(s)	128, 297, 354
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	3 cut(s)	126, 295, 352
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	4 cut(s)	147, 379, 382, 385
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	241, 362
BtsIMutI	CAGTG	2 cut(s)	117, 156
CfoI	GCGC	1 cut(s)	423
CspCI	CAANNNNNGTGG	2 cut(s)	368, 403
CviAII	CATG	1 cut(s)	439
CviJI	RGCY	2 cut(s)	6, 447
CviKI_1	RGCY	2 cut(s)	6, 447
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	4 cut(s)	21, 162, 182, 248
DpnII	GATC	4 cut(s)	19, 160, 180, 246
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
EcoRII	CCWGG	3 cut(s)	126, 295, 352
FaeI	CATG	1 cut(s)	442
FaiI	YATR	6 cut(s)	91, 197, 234, 324, 434, 440
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	1 cut(s)	438
Fnu4HI	GCNGC	4 cut(s)	136, 368, 371, 374
FokI	GGATG	2 cut(s)	228, 369
Fsp4HI	GCNGC	4 cut(s)	136, 368, 371, 374
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	4 cut(s)	136, 368, 371, 374
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	447
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	115, 293
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	115, 293
HpyCH4III	ACNGT	2 cut(s)	112, 404
HpyCH4IV	ACGT	2 cut(s)	36, 81
HpyCH4V	TGCA	3 cut(s)	73, 93, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 373
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	2 cut(s)	36, 81
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	19, 160, 180, 246
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	9 cut(s)	113, 140, 235, 282, 293, 309, 339, 366, 422
Lsp1109I	GCAGC	4 cut(s)	147, 379, 382, 385
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	2 cut(s)	36, 81
MaeIII	GTNAC	3 cut(s)	106, 390, 404
MalI	GATC	4 cut(s)	21, 162, 182, 248
MboI	GATC	4 cut(s)	19, 160, 180, 246
MboII	GAAGA	4 cut(s)	29, 56, 73, 155
MhlI	GDGCHC	2 cut(s)	214, 295
MluCI	AATT	4 cut(s)	8, 229, 260, 275
MnlI	CCTC	4 cut(s)	51, 77, 225, 246
MseI	TTAA	4 cut(s)	11, 102, 227, 363
MspCI	CTTAAG	1 cut(s)	362
MspR9I	CCNGG	3 cut(s)	128, 297, 354
MvaI	CCWGG	3 cut(s)	128, 297, 354
MwoI	GCNNNNNNNGC	2 cut(s)	336, 373
NdeII	GATC	4 cut(s)	19, 160, 180, 246
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	390
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	137, 369, 372, 375
Psp6I	CCWGG	3 cut(s)	126, 295, 352
PspEI	GGTNACC	1 cut(s)	404
PspGI	CCWGG	3 cut(s)	126, 295, 352
PspN4I	GGNNCC	1 cut(s)	202
SaqAI	TTAA	4 cut(s)	11, 102, 227, 363
SatI	GCNGC	4 cut(s)	136, 368, 371, 374
Sau3AI	GATC	4 cut(s)	19, 160, 180, 246
ScrFI	CCNGG	3 cut(s)	128, 297, 354
SduI	GDGCHC	2 cut(s)	214, 295
SfaNI	GCATC	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	8, 229, 260, 275
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	3 cut(s)	126, 295, 352
TaaI	ACNGT	2 cut(s)	112, 404
TaiI	ACGT	2 cut(s)	39, 84
TasI	AATT	4 cut(s)	8, 229, 260, 275
Tru1I	TTAA	4 cut(s)	11, 102, 227, 363
Tru9I	TTAA	4 cut(s)	11, 102, 227, 363
TscAI	CASTG	2 cut(s)	117, 163
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	4 cut(s)	135, 367, 370, 373
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	4 cut(s)	57, 230, 311, 455
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	117, 163
Vha464I	CTTAAG	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	275
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.