Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010564

Physical Location & Seq

Genomic Coordinates Forward (+)

10287777 .. 10289068

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG128900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAAGGTGAGGATGGTTATGTTCCGGTGGAAGCTAAGGATTTTTATAAGGACTACAGTCCTCGAAAGACTTTCTCGCCCGAGATTGTGGAGCTCGGAGAGGATATCACGAGTACTAGTGATATCACTCCAGGCAGCACTAGCAGAGATATTGTAGGTGTCAATGATGTTTATGTGGCTGTTGGTAAAGAAGACACTGATGTTCTGAAATGGGTGCTTGATAATGCTGTTTCGCCTGGTTCTCGGGTCTTTCTTGTCCATGTCTTCCCTCCAATCACCCACATCCCTACACCAGTTGGACGATTATCAATGAGCCAATTAAGTGAAGATCAAGTGAGATTTTACGTCAATGAAGAGAATAATAAGAGGAAGAACCTCTTGCAGAAATACGTCTGCTTATGCAACAATGCTAAGGTAACAGTGGACACAATGCTCCTGGAGAGCAGCGACAGAACAAAAGCAATCACTGATCTTCTGTCCGTTCTTAGGATCACTCACCTTGTCATAGGAACCAAAAGAGCACCTCATTCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

178

Amino Acids

19.9

Weight (kDa)

5.58

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06120 FvH4_5g06120 FvH4_5g06120 FvH4_5g06120
malus_domestica	MD06G1166500.v1.1 MD14G1172200.v1.1
prunus_persica	Prupe.5G166500_v2.0.a1 Prupe.5G166500_v2.0.a1
pyrus_communis	pycom06g14920
rosa_chinensis	RchiOBHm_Chr7g0192691
rosa_laevigata	RLG00000004336
rosa_multiflora	Rmu_sc0002040.1_g000010 Rmu_sc0002040.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262740
rosa_rugosa	Rorug07G0003900 Rorug07G0004000
rosa_samantha	Rh7AG128900 Rh7BG130400 Rh7CG133800 Rh7DG131200
rosa_wichuraiana	Rw7G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
AclWI	GGATC	1 cut(s)	497
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	486
AgsI	TTSAA	1 cut(s)	531
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	3 cut(s)	130, 235, 435
AluBI	AGCT	2 cut(s)	35, 94
AluI	AGCT	2 cut(s)	35, 94
Alw21I	GWGCWC	2 cut(s)	96, 523
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	2 cut(s)	80, 243
ApeKI	GCWGC	2 cut(s)	135, 444
AsuHPI	GGTGA	3 cut(s)	20, 268, 488
AvaI	CYCGRG	2 cut(s)	80, 243
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	109
BbsI	GAAGAC	2 cut(s)	198, 256
Bbv12I	GWGCWC	2 cut(s)	96, 523
BbvI	GCAGC	2 cut(s)	147, 456
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	3 cut(s)	132, 237, 437
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	2 cut(s)	117, 141
BfmI	CTRYAG	1 cut(s)	55
BisI	GCNGC	2 cut(s)	136, 445
BlsI	GCNGC	2 cut(s)	137, 446
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	3 cut(s)	132, 237, 437
BmeT110I	CYCGRG	2 cut(s)	80, 243
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	3 cut(s)	132, 237, 437
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	2 cut(s)	198, 256
BpmI	CTGGAG	2 cut(s)	114, 458
Bpu10I	CCTNAGC	2 cut(s)	36, 411
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	293
BseBI	CCWGG	3 cut(s)	132, 237, 437
BseGI	GGATG	2 cut(s)	19, 282
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	147, 456
BsiHKAI	GWGCWC	2 cut(s)	96, 523
BsiHKCI	CYCGRG	2 cut(s)	80, 243
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	486
BsoBI	CYCGRG	2 cut(s)	80, 243
Bsp1286I	GDGCHC	2 cut(s)	96, 523
Bsp143I	GATC	3 cut(s)	328, 469, 489
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	293
BssMI	GATC	3 cut(s)	328, 469, 489
BssSI	CACGAG	1 cut(s)	109
Bst2BI	CACGAG	1 cut(s)	109
Bst2UI	CCWGG	3 cut(s)	132, 237, 437
Bst4CI	ACNGT	2 cut(s)	59, 421
Bst6I	CTCTTC	1 cut(s)	348
BstDEI	CTNAG	3 cut(s)	36, 411, 485
BstF5I	GGATG	2 cut(s)	19, 282
BstKTI	GATC	3 cut(s)	331, 472, 492
BstMBI	GATC	3 cut(s)	328, 469, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	3 cut(s)	132, 237, 437
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSCI	CCNGG	3 cut(s)	130, 235, 435
BstSFI	CTRYAG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	147, 456
BstV2I	GAAGAC	2 cut(s)	198, 256
BtsCI	GGATG	2 cut(s)	19, 282
BtsIMutI	CAGTG	3 cut(s)	195, 426, 465
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	4 cut(s)	35, 94, 179, 315
CviKI_1	RGCY	4 cut(s)	35, 94, 179, 315
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	3 cut(s)	36, 411, 485
DpnI	GATC	3 cut(s)	330, 471, 491
DpnII	GATC	3 cut(s)	328, 469, 489
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco32I	GATATC	2 cut(s)	106, 124
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	2 cut(s)	80, 243
EcoICRI	GAGCTC	1 cut(s)	94
EcoRII	CCWGG	3 cut(s)	130, 235, 435
EcoRV	GATATC	2 cut(s)	106, 124
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	1 cut(s)	263
FaiI	YATR	6 cut(s)	21, 48, 174, 261, 400, 506
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	136, 445
FokI	GGATG	2 cut(s)	26, 269
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	136, 445
FspBI	CTAG	2 cut(s)	117, 141
GluI	GCNGC	2 cut(s)	136, 445
GsuI	CTGGAG	2 cut(s)	114, 458
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	263
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	3 cut(s)	20, 268, 488
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	2 cut(s)	98, 207
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	424
HpyCH4III	ACNGT	2 cut(s)	59, 421
HpyCH4IV	ACGT	2 cut(s)	345, 390
HpyCH4V	TGCA	2 cut(s)	382, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	3 cut(s)	36, 411, 485
HpySE526I	ACGT	2 cut(s)	345, 390
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	3 cut(s)	328, 469, 489
LmnI	GCTCC	2 cut(s)	91, 438
LpnPI	CCDG	8 cut(s)	39, 117, 144, 222, 249, 306, 422, 449
Lsp1109I	GCAGC	2 cut(s)	147, 456
MaeI	CTAG	2 cut(s)	117, 141
MaeII	ACGT	2 cut(s)	345, 390
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	330, 471, 491
MboI	GATC	3 cut(s)	328, 469, 489
MboII	GAAGA	6 cut(s)	203, 256, 338, 365, 382, 464
MhlI	GDGCHC	2 cut(s)	96, 523
MluCI	AATT	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	7 cut(s)	4, 72, 94, 279, 360, 386, 534
MseI	TTAA	1 cut(s)	320
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	3 cut(s)	132, 237, 437
MvaI	CCWGG	3 cut(s)	132, 237, 437
MwoI	GCNNNNNNNGC	1 cut(s)	141
NdeII	GATC	3 cut(s)	328, 469, 489
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	511
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	137, 446
PshAI	GACNNNNGTC	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	3 cut(s)	130, 235, 435
PspGI	CCWGG	3 cut(s)	130, 235, 435
PspN4I	GGNNCC	1 cut(s)	511
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	2 cut(s)	136, 445
Sau3AI	GATC	3 cut(s)	328, 469, 489
ScaI	AGTACT	1 cut(s)	115
ScrFI	CCNGG	3 cut(s)	132, 237, 437
SduI	GDGCHC	2 cut(s)	96, 523
SfcI	CTRYAG	1 cut(s)	55
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	1 cut(s)	317
SspMI	CTAG	2 cut(s)	117, 141
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	130, 235, 435
TaaI	ACNGT	2 cut(s)	59, 421
TaiI	ACGT	2 cut(s)	348, 393
TaqI	TCGA	1 cut(s)	64
TasI	AATT	1 cut(s)	317
TatI	WGTACW	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	3 cut(s)	202, 426, 472
TseI	GCWGC	2 cut(s)	135, 444
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	3 cut(s)	202, 426, 472
XspI	CTAG	2 cut(s)	117, 141
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.