Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010564

Physical Location & Seq

Genomic Coordinates Forward (+)

14411407 .. 14413945

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G166500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAAGAAAAAGAGTATGTTCCGGTGGAAGCCAAGGATTTTTATAAGAGATATAGTGCACGAGCGTTGTCACCAGAGATTGTGGTGGTAAAAGAGGAGATAGAAGAAGAGATAGAAGAGGAGATAGAAGAAGAGATAGAAGAGGAGATAGAAGAAGAGATAGAAGAGGAGATAAAAGAGGAGATAGAAGAGGAGAGCAGGAGTTTTAGTACCGCTGCTGGCGGCACTAGCATAGATAGAGTTCTCAAGGATGTATATGTTGCTGTTGGTAAAGATGACACAGATGTTCTGAAATGGACGCTTGATAATGCTGTTTCCCCTGGCACTCGGGTTTTTCTAGTCCATGTCTTCCCTCCAATCACCTACATCCCTACACCAGTTGGAAGATTATCAAAGGGCCAATTGACTGAAGATCAAGTGAGATTATACATTAATGAAGAGAGTAACAAGAGGAGGAACCTGTTGCAGAAATATGTGAGCTTGTGCAATGATGCTAAGGTAACAGTGGAGACAATGCTCATTGATAGCAAGGACACAGCAAAAGCAATTCTTGATCTCATACCTGTTCTTAGCATCATCCACCTTGTCATAGGAACCAAAAGACCACCTCACTCAAGGCGAGTGCAGAAGAAATTGTCATTAGGAGAGTTTGTTAGGAAGAATGCGCCGGACTTTTGTGAGGTTAGCATTATTCATGAAGGCAAGAAGGTGGAGGCCGATCAGCAAGTAAATGGCCCGATCATGCCGGCAAATACTCACTACCCTGAAAGAAGCTTCTTCGCATGCTTTCCAGTGAGCTGCAAGATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

271

Amino Acids

30.75

Weight (kDa)

4.84

Isoelectric Point (pI)

80.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06120 FvH4_5g06120 FvH4_5g06120 FvH4_5g06120
malus_domestica	MD06G1166500.v1.1 MD14G1172200.v1.1
prunus_persica	Prupe.5G166500_v2.0.a1 Prupe.5G166500_v2.0.a1
pyrus_communis	pycom06g14920
rosa_chinensis	RchiOBHm_Chr7g0192691
rosa_laevigata	RLG00000004336
rosa_multiflora	Rmu_sc0002040.1_g000010 Rmu_sc0002040.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262740
rosa_rugosa	Rorug07G0003900 Rorug07G0004000
rosa_samantha	Rh7AG128900 Rh7BG130400 Rh7CG133800 Rh7DG131200
rosa_wichuraiana	Rw7G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
AciI	CCGC	2 cut(s)	213, 222
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	3 cut(s)	480, 774, 798
AluI	AGCT	3 cut(s)	480, 774, 798
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	503
Alw44I	GTGCAC	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	3 cut(s)	397, 714, 733
ApaLI	GTGCAC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	215, 798
AseI	ATTAAT	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	2 cut(s)	397, 734
AsuHPI	GGTGA	2 cut(s)	63, 352
AvaI	CYCGRG	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	61
BauI	CACGAG	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	202, 785
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	503
BfaI	CTAG	2 cut(s)	228, 338
BisI	GCNGC	3 cut(s)	216, 223, 799
BlsI	GCNGC	3 cut(s)	217, 224, 800
Bme1390I	CCNGG	1 cut(s)	321
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	2 cut(s)	397, 734
BmiI	GGNNCC	2 cut(s)	458, 595
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	481, 582
BpiI	GAAGAC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	230, 598
BsaJI	CCNNGG	2 cut(s)	33, 319
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 636, 666
Bse118I	RCCGGY	1 cut(s)	745
Bse1I	ACTGG	2 cut(s)	377, 791
Bse3DI	GCAATG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	33, 319
BseGI	GGATG	3 cut(s)	256, 366, 576
BseMI	GCAATG	1 cut(s)	493
BseNI	ACTGG	2 cut(s)	377, 791
BseRI	GAGGAG	7 cut(s)	110, 134, 158, 182, 194, 206, 466
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	202, 785
BsgI	GTGCAG	1 cut(s)	644
BshFI	GGCC	3 cut(s)	399, 716, 735
BsiHKAI	GWGCWC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	3 cut(s)	23, 668, 746
BsmAI	GTCTC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	3 cut(s)	399, 716, 735
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	4 cut(s)	412, 553, 718, 738
BspACI	CCGC	2 cut(s)	213, 222
BspANI	GGCC	3 cut(s)	399, 716, 735
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	458, 595
BsrDI	GCAATG	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	745
BsrI	ACTGG	2 cut(s)	377, 791
BssAI	RCCGGY	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	33, 319
BssMI	GATC	4 cut(s)	412, 553, 718, 738
BssSI	CACGAG	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	8 cut(s)	102, 111, 126, 135, 150, 159, 183, 432
BstC8I	GCNNGC	3 cut(s)	220, 747, 784
BstDEI	CTNAG	2 cut(s)	495, 569
BstF5I	GGATG	3 cut(s)	256, 366, 576
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	4 cut(s)	415, 556, 721, 741
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	4 cut(s)	412, 553, 718, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	786
BstSCI	CCNGG	1 cut(s)	319
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	202, 785
BstV2I	GAAGAC	1 cut(s)	340
BsuRI	GGCC	3 cut(s)	399, 716, 735
BtsCI	GGATG	3 cut(s)	256, 366, 576
BtsIMutI	CAGTG	2 cut(s)	510, 798
Cac8I	GCNNGC	3 cut(s)	220, 747, 784
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	1 cut(s)	667
Cfr10I	RCCGGY	1 cut(s)	745
Cfr13I	GGNCC	2 cut(s)	397, 734
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	4 cut(s)	344, 695, 742, 783
CviJI	RGCY	7 cut(s)	32, 399, 480, 716, 735, 774, 798
CviKI_1	RGCY	7 cut(s)	32, 399, 480, 716, 735, 774, 798
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	495, 569
DpnI	GATC	4 cut(s)	414, 555, 720, 740
DpnII	GATC	4 cut(s)	412, 553, 718, 738
Eam1104I	CTCTTC	8 cut(s)	102, 111, 126, 135, 150, 159, 183, 432
EarI	CTCTTC	8 cut(s)	102, 111, 126, 135, 150, 159, 183, 432
Eco130I	CCWWGG	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	4 cut(s)	347, 698, 745, 786
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FatI	CATG	4 cut(s)	343, 694, 741, 782
Fnu4HI	GCNGC	3 cut(s)	216, 223, 799
FokI	GGATG	3 cut(s)	263, 353, 563
Fsp4HI	GCNGC	3 cut(s)	216, 223, 799
FspBI	CTAG	2 cut(s)	228, 338
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	3 cut(s)	216, 223, 799
HaeIII	GGCC	3 cut(s)	399, 716, 735
HapII	CCGG	3 cut(s)	23, 668, 746
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	4 cut(s)	347, 698, 745, 786
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HindIII	AAGCTT	1 cut(s)	772
HpaII	CCGG	3 cut(s)	23, 668, 746
HphI	GGTGA	2 cut(s)	63, 352
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	551, 695
Hpy8I	GTNNAC	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	692, 700
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	5 cut(s)	59, 466, 486, 625, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	2 cut(s)	495, 569
Hsp92II	CATG	4 cut(s)	347, 698, 745, 786
HspAI	GCGC	1 cut(s)	665
KroI	GCCGGC	1 cut(s)	745
KroNI	GCCGGC	1 cut(s)	747
Kzo9I	GATC	4 cut(s)	412, 553, 718, 738
Lsp1109I	GCAGC	2 cut(s)	202, 785
LweI	GCATC	2 cut(s)	481, 582
MaeI	CTAG	2 cut(s)	228, 338
MaeIII	GTNAC	3 cut(s)	69, 443, 499
MalI	GATC	4 cut(s)	414, 555, 720, 740
MboI	GATC	4 cut(s)	412, 553, 718, 738
MfeI	CAATTG	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	3 cut(s)	401, 546, 632
MmeI	TCCRAC	1 cut(s)	361
MroNI	GCCGGC	1 cut(s)	745
MseI	TTAA	2 cut(s)	432, 811
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	3 cut(s)	23, 668, 746
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	228
NaeI	GCCGGC	1 cut(s)	747
NdeII	GATC	4 cut(s)	412, 553, 718, 738
NgoMIV	GCCGGC	1 cut(s)	745
NlaIII	CATG	4 cut(s)	347, 698, 745, 786
NlaIV	GGNNCC	2 cut(s)	458, 595
NmuCI	GTSAC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	786
PaeI	GCATGC	1 cut(s)	786
PagI	TCATGA	1 cut(s)	694
PctI	GAATGC	1 cut(s)	667
PdiI	GCCGGC	1 cut(s)	747
PkrI	GCNGC	3 cut(s)	217, 224, 800
PshBI	ATTAAT	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	458, 595
PspPI	GGNCC	2 cut(s)	397, 734
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	432, 811
SatI	GCNGC	3 cut(s)	216, 223, 799
Sau3AI	GATC	4 cut(s)	412, 553, 718, 738
Sau96I	GGNCC	2 cut(s)	397, 734
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	2 cut(s)	481, 582
SmlI	CTYRAG	2 cut(s)	245, 613
SmoI	CTYRAG	2 cut(s)	245, 613
SphI	GCATGC	1 cut(s)	786
Sse9I	AATT	3 cut(s)	401, 546, 632
SsiI	CCGC	2 cut(s)	213, 222
SspMI	CTAG	2 cut(s)	228, 338
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	505
TasI	AATT	3 cut(s)	401, 546, 632
TauI	GCSGC	1 cut(s)	225
Tru1I	TTAA	2 cut(s)	432, 811
Tru9I	TTAA	2 cut(s)	432, 811
TscAI	CASTG	2 cut(s)	510, 798
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	2 cut(s)	215, 798
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	3 cut(s)	450, 683, 711
TspRI	CASTG	2 cut(s)	510, 798
VneI	GTGCAC	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	432
XceI	RCATGY	1 cut(s)	786
XspI	CTAG	2 cut(s)	228, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.