Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010564

Physical Location & Seq

Genomic Coordinates Forward (+)

30679238 .. 30679714

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1166500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAAGACGAAGATTATGTTCCGATGGAAGCCAAGGATTTTTACAAGATTTACGTTAAAGCAGGCGCGTTGTCGCCGGAGATTGTGAAGAATCCGGAGATACAAGAAGAGGATAGCGAGAGTCCTAATTTCACAGAAAGTACTAGCAAAAATGTAGTCGTCAACGATGTTTATGTTGCTGTTGGCAAAGATGACACAGATGTTCTGAAATGGACGCTTGAGAATGCTGCTTCCTCCGGTAGTACTCGAGTTTTTCTTGTCCATGTCTTCCCTCCGGTCACCCACGTCCCCACACCCGGTAACACCAGTTCACCTGTTAATGTTTTTATTGTCCATTTCTGTCCATGCTGTCTATTATGTTTATGGGATTCTGATCAAACGCTTCATTCATTCATCAAATATCTTTTTTTCGGGTTCGGATATGTGATCAAACCACCATGTATACATCAAATTGTTTTTCCTGATCACCAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

159

Amino Acids

17.75

Weight (kDa)

4.74

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06120 FvH4_5g06120 FvH4_5g06120 FvH4_5g06120
malus_domestica	MD06G1166500.v1.1 MD14G1172200.v1.1
prunus_persica	Prupe.5G166500_v2.0.a1 Prupe.5G166500_v2.0.a1
pyrus_communis	pycom06g14920
rosa_chinensis	RchiOBHm_Chr7g0192691
rosa_laevigata	RLG00000004336
rosa_multiflora	Rmu_sc0002040.1_g000010 Rmu_sc0002040.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262740
rosa_rugosa	Rorug07G0003900 Rorug07G0004000
rosa_samantha	Rh7AG128900 Rh7BG130400 Rh7CG133800 Rh7DG131200
rosa_wichuraiana	Rw7G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	442
AccII	CGCG	1 cut(s)	68
AccIII	TCCGGA	1 cut(s)	94
AfaI	GTAC	2 cut(s)	142, 244
AfiI	CCNNNNNNNGG	1 cut(s)	296
AjiI	CACGTC	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	246
Aor13HI	TCCGGA	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	227
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspLEI	GCGC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	271, 303, 458
AvaI	CYCGRG	1 cut(s)	246
BbsI	GAAGAC	2 cut(s)	12, 259
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	19
BclI	TGATCA	3 cut(s)	373, 426, 463
BcnI	CCSGG	1 cut(s)	297
BfaI	CTAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmcAI	AGTACT	2 cut(s)	142, 244
Bme1390I	CCNGG	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	246
BmgBI	CACGTC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	297
BpiI	GAAGAC	2 cut(s)	12, 259
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	3 cut(s)	94, 236, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	33
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	5 cut(s)	77, 95, 237, 275, 297
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	246
Bsp13I	TCCGGA	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	373, 426, 463
BspEI	TCCGGA	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	3 cut(s)	373, 426, 463
BssNAI	GTATAC	1 cut(s)	443
BssT1I	CCWWGG	1 cut(s)	33
Bst1107I	GTATAC	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	64
BstEII	GGTNACC	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	3 cut(s)	376, 429, 466
BstMBI	GATC	3 cut(s)	373, 426, 463
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	295
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	2 cut(s)	12, 259
BstZ17I	GTATAC	1 cut(s)	443
BtrI	CACGTC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	68
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	141, 243
CviAII	CATG	3 cut(s)	263, 345, 438
CviJI	RGCY	1 cut(s)	32
CviKI_1	RGCY	1 cut(s)	32
CviQI	GTAC	2 cut(s)	141, 243
DpnI	GATC	3 cut(s)	375, 428, 465
DpnII	GATC	3 cut(s)	373, 426, 463
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	246
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	266, 348, 441
FaiI	YATR	9 cut(s)	18, 174, 264, 346, 358, 364, 423, 439, 443
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	262, 344, 437
FbaI	TGATCA	3 cut(s)	373, 426, 463
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	228
HapII	CCGG	5 cut(s)	77, 95, 237, 275, 297
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	266, 348, 441
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	91, 121, 368
HpaII	CCGG	5 cut(s)	77, 95, 237, 275, 297
HphI	GGTGA	3 cut(s)	271, 303, 458
Hpy166II	GTNNAC	3 cut(s)	163, 311, 443
Hpy188I	TCNGA	4 cut(s)	24, 207, 373, 419
Hpy188III	TCNNGA	2 cut(s)	95, 461
Hpy8I	GTNNAC	3 cut(s)	163, 311, 443
HpyCH4IV	ACGT	2 cut(s)	54, 285
HpySE526I	ACGT	2 cut(s)	54, 285
Hsp92II	CATG	3 cut(s)	266, 348, 441
HspAI	GCGC	1 cut(s)	66
Kpn2I	TCCGGA	1 cut(s)	94
Ksp22I	TGATCA	3 cut(s)	373, 426, 463
Kzo9I	GATC	3 cut(s)	373, 426, 463
LpnPI	CCDG	8 cut(s)	48, 90, 108, 250, 288, 310, 319, 327
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	2 cut(s)	54, 285
MaeIII	GTNAC	2 cut(s)	277, 299
MalI	GATC	3 cut(s)	375, 428, 465
MboI	GATC	3 cut(s)	373, 426, 463
MboII	GAAGA	5 cut(s)	17, 23, 100, 119, 259
MluCI	AATT	2 cut(s)	127, 450
MlyI	GAGTC	1 cut(s)	130
MnlI	CCTC	3 cut(s)	103, 244, 282
MroI	TCCGGA	1 cut(s)	94
MseI	TTAA	2 cut(s)	57, 318
MspI	CCGG	5 cut(s)	77, 95, 237, 275, 297
MspR9I	CCNGG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	229
MvnI	CGCG	1 cut(s)	68
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	3 cut(s)	373, 426, 463
NlaIII	CATG	3 cut(s)	266, 348, 441
NmuCI	GTSAC	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	246
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	91, 368
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PspEI	GGTNACC	1 cut(s)	277
PspXI	VCTCGAGB	1 cut(s)	246
PsrI	GAACNNNNNNTAC	2 cut(s)	292, 324
RsaI	GTAC	2 cut(s)	142, 244
RsaNI	GTAC	2 cut(s)	141, 243
SaqAI	TTAA	2 cut(s)	57, 318
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	373, 426, 463
ScaI	AGTACT	2 cut(s)	142, 244
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	3 cut(s)	57, 288, 316
Sfr274I	CTCGAG	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	218, 246
SmoI	CTYRAG	2 cut(s)	218, 246
Sse9I	AATT	2 cut(s)	127, 450
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	33
TaiI	ACGT	2 cut(s)	57, 288
TaqI	TCGA	1 cut(s)	247
TasI	AATT	2 cut(s)	127, 450
TatI	WGTACW	2 cut(s)	140, 242
TfiI	GAWTC	2 cut(s)	91, 368
Tru1I	TTAA	2 cut(s)	57, 318
Tru9I	TTAA	2 cut(s)	57, 318
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	374, 378, 382
XhoI	CTCGAG	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	442
XspI	CTAG	1 cut(s)	144
ZrmI	AGTACT	2 cut(s)	142, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.