Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010564

Physical Location & Seq

Genomic Coordinates Forward (+)

19527129 .. 19528648

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTACGCCTCGAGGGAAGATGAAGATTATGTTCCGAGGGAAGCCAAGGAATTTTACAAGATTTACGTTAAAGCAGGCGCGTTGTCGCCGGAGATTGTAAAGAATCCGGAGATTGTGAAGAATCGGGAGATACAAGAAGAGGATAGCGAGAGTCCTATTTTCACAGAAAGGACTAGCAAACATGTAGTCGTCAACGATGTTTATGTTGCTGTTGGCAAAGATGACACAGATGTTCTGAAATGGACGCTTGAGAATGCTGCTTCCTCCGGTAGTACTCGGGTTTTTCTTGTCCATGTCTTCCCTCCGGTCAACCACGTCCCTACACCCGGTAACACCAGTTCACCTGTAACAGCGGAAACAATACTCCACGAGAGCAATTGCACAGAAGAATCAATTCTTAATCTTATTCCTGCTCTTAGCATTACTCACCTTGTCATAGGAACAAAAAGGCATTCAAGGTGCGTAGCAGCGCAGGCCAGTTATTTCTTTTTCCCGAGAAAACAATTGTCGTTAGGAGAATTTGTTAAGAACAATGCACCGGGCTTTTGTGAGGTTAGCATCATTCATAAAGGCAATGAGGTGGAGGTCAATCAACAAGTAGATGGTCCAAAAAAGCCAGAAAATACTCGTCACTACGAAAAAACCCTTCTCTTTTCATGCTTTCCAGGCAAGTTCAATTCAGAAATCTACTATTTTTACATATACAGGCTACACATATATTGCCATCAGGTTTTGCAGTATAGTCTCCGAAATGAATCTCTCGCTCACTCTCAAATTTTTCGGATGGACAGTTTGCGGGAAGGCCAAGATTTCTTAATATCAACCTCAAAAAGCTGTGACAGAGATGAAACAAACTCAGCTATGCATTATGGGACAATGGGAAGACTACATACTCAAGAGATGATGAAGTGGAAAACTCGAAAGCTAGCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

312

Amino Acids

35.58

Weight (kDa)

6.5

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06120 FvH4_5g06120 FvH4_5g06120 FvH4_5g06120
malus_domestica	MD06G1166500.v1.1 MD14G1172200.v1.1
prunus_persica	Prupe.5G166500_v2.0.a1 Prupe.5G166500_v2.0.a1
pyrus_communis	pycom06g14920
rosa_chinensis	RchiOBHm_Chr7g0192691
rosa_laevigata	RLG00000004336
rosa_multiflora	Rmu_sc0002040.1_g000010 Rmu_sc0002040.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262740
rosa_rugosa	Rorug07G0003900 Rorug07G0004000
rosa_samantha	Rh7AG128900 Rh7BG130400 Rh7CG133800 Rh7DG131200
rosa_wichuraiana	Rw7G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	10
AccII	CGCG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	2 cut(s)	353, 796
AcsI	RAATTY	3 cut(s)	50, 518, 774
AfaI	GTAC	2 cut(s)	5, 274
AfiI	CCNNNNNNNGG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	456, 676
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	4 cut(s)	834, 860, 925, 933
AluI	AGCT	4 cut(s)	834, 860, 925, 933
Alw26I	GTCTC	1 cut(s)	749
Ama87I	CYCGRG	3 cut(s)	10, 276, 493
Aor13HI	TCCGGA	1 cut(s)	106
AoxI	GGCC	2 cut(s)	474, 802
ApeKI	GCWGC	2 cut(s)	257, 467
ApoI	RAATTY	3 cut(s)	50, 518, 774
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
Asp700I	GAANNNNTTC	1 cut(s)	393
AspLEI	GCGC	2 cut(s)	80, 472
AspS9I	GGNCC	1 cut(s)	605
AsuC2I	CCSGG	2 cut(s)	327, 540
AsuHPI	GGTGA	2 cut(s)	333, 419
AsuNHI	GCTAGC	1 cut(s)	925
AvaI	CYCGRG	3 cut(s)	10, 276, 493
AvaII	GGWCC	1 cut(s)	605
BarI	GAAGNNNNNNTAC	2 cut(s)	874, 906
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	2 cut(s)	289, 889
BbvI	GCAGC	2 cut(s)	244, 479
BccI	CCATC	3 cut(s)	596, 732, 778
BciT130I	CCWGG	1 cut(s)	666
BcnI	CCSGG	2 cut(s)	327, 540
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	2 cut(s)	174, 926
BisI	GCNGC	2 cut(s)	258, 468
BlsI	GCNGC	2 cut(s)	259, 469
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	3 cut(s)	327, 540, 666
Bme18I	GGWCC	1 cut(s)	605
BmeT110I	CYCGRG	3 cut(s)	10, 276, 493
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	605
BmrFI	CCNGG	3 cut(s)	327, 540, 666
BmsI	GCATC	1 cut(s)	567
BmtI	GCTAGC	1 cut(s)	929
BpiI	GAAGAC	2 cut(s)	289, 889
BpuEI	CTTGAG	2 cut(s)	269, 879
BpuMI	CCSGG	2 cut(s)	327, 540
BsaJI	CCNNGG	2 cut(s)	35, 45
BsaWI	WCCGGW	3 cut(s)	106, 266, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	336, 477
Bse3DI	GCAATG	1 cut(s)	580
BseAI	TCCGGA	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	35, 45
BseGI	GGATG	1 cut(s)	789
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	1 cut(s)	580
BseMII	CTCAG	1 cut(s)	870
BseNI	ACTGG	2 cut(s)	336, 477
BseXI	GCAGC	2 cut(s)	244, 479
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	476, 804
BsiHKCI	CYCGRG	3 cut(s)	10, 276, 493
BsiSI	CCGG	6 cut(s)	89, 107, 267, 305, 327, 539
BslFI	GGGAC	2 cut(s)	302, 886
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	749
BsmFI	GGGAC	2 cut(s)	302, 886
BsmI	GAATGC	2 cut(s)	259, 451
BsnI	GGCC	2 cut(s)	476, 804
BsoBI	CYCGRG	3 cut(s)	10, 276, 493
Bsp13I	TCCGGA	1 cut(s)	106
BspACI	CCGC	2 cut(s)	353, 796
BspANI	GGCC	2 cut(s)	476, 804
BspCNI	CTCAG	1 cut(s)	869
BspEI	TCCGGA	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	80
BspOI	GCTAGC	1 cut(s)	929
BsrDI	GCAATG	1 cut(s)	580
BsrI	ACTGG	2 cut(s)	336, 477
BssECI	CCNNGG	2 cut(s)	35, 45
BssSI	CACGAG	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	1 cut(s)	791
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	4 cut(s)	76, 474, 927, 931
BstDEI	CTNAG	2 cut(s)	416, 856
BstF5I	GGATG	1 cut(s)	789
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	80, 472
BstMAI	GTCTC	1 cut(s)	749
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 666
BstNI	CCWGG	1 cut(s)	666
BstNSI	RCATGY	1 cut(s)	185
BstSCI	CCNGG	3 cut(s)	325, 538, 664
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	244, 479
BstV2I	GAAGAC	2 cut(s)	289, 889
BsuRI	GGCC	2 cut(s)	476, 804
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	789
Cac8I	GCNNGC	4 cut(s)	76, 474, 927, 931
CfoI	GCGC	2 cut(s)	80, 472
Cfr13I	GGNCC	1 cut(s)	605
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	4, 273
CviAII	CATG	3 cut(s)	182, 293, 657
CviQI	GTAC	2 cut(s)	4, 273
DdeI	CTNAG	2 cut(s)	416, 856
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	605
Eco88I	CYCGRG	3 cut(s)	10, 276, 493
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	867
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	185, 296, 660
FaqI	GGGAC	2 cut(s)	302, 886
FatI	CATG	3 cut(s)	181, 292, 656
FauI	CCCGC	1 cut(s)	789
Fnu4HI	GCNGC	2 cut(s)	258, 468
FokI	GGATG	1 cut(s)	796
Fsp4HI	GCNGC	2 cut(s)	258, 468
FspBI	CTAG	2 cut(s)	174, 926
GlaI	GCGC	2 cut(s)	79, 471
GluI	GCNGC	2 cut(s)	258, 468
HaeIII	GGCC	2 cut(s)	476, 804
HapII	CCGG	6 cut(s)	89, 107, 267, 305, 327, 539
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	2 cut(s)	80, 472
Hin1II	CATG	3 cut(s)	185, 296, 660
Hin6I	GCGC	2 cut(s)	78, 470
HinP1I	GCGC	2 cut(s)	78, 470
HincII	GTYRAC	2 cut(s)	193, 310
HindII	GTYRAC	2 cut(s)	193, 310
HinfI	GANTC	5 cut(s)	103, 121, 151, 389, 755
HpaII	CCGG	6 cut(s)	89, 107, 267, 305, 327, 539
HphI	GGTGA	2 cut(s)	333, 419
Hpy166II	GTNNAC	3 cut(s)	193, 310, 341
Hpy188I	TCNGA	5 cut(s)	36, 237, 682, 749, 783
Hpy188III	TCNNGA	4 cut(s)	107, 125, 493, 896
Hpy8I	GTNNAC	3 cut(s)	193, 310, 341
HpyAV	CCTTC	2 cut(s)	656, 794
HpyCH4III	ACNGT	1 cut(s)	791
HpyCH4IV	ACGT	2 cut(s)	66, 315
HpyCH4V	TGCA	4 cut(s)	381, 536, 736, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 666
HpyF3I	CTNAG	2 cut(s)	416, 856
HpySE526I	ACGT	2 cut(s)	66, 315
Hsp92II	CATG	3 cut(s)	185, 296, 660
HspAI	GCGC	2 cut(s)	78, 470
Kpn2I	TCCGGA	1 cut(s)	106
Lsp1109I	GCAGC	2 cut(s)	244, 479
LweI	GCATC	1 cut(s)	567
MaeI	CTAG	2 cut(s)	174, 926
MaeII	ACGT	2 cut(s)	66, 315
MaeIII	GTNAC	4 cut(s)	329, 346, 629, 836
MboII	GAAGA	7 cut(s)	29, 35, 130, 149, 289, 398, 894
MfeI	CAATTG	2 cut(s)	376, 503
MluCI	AATT	7 cut(s)	50, 376, 393, 503, 518, 676, 774
MlyI	GAGTC	1 cut(s)	160
Mph1103I	ATGCAT	1 cut(s)	867
MroI	TCCGGA	1 cut(s)	106
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	4 cut(s)	69, 399, 525, 815
MspA1I	CMGCKG	2 cut(s)	353, 933
MspI	CCGG	6 cut(s)	89, 107, 267, 305, 327, 539
MspR9I	CCNGG	3 cut(s)	327, 540, 666
MunI	CAATTG	2 cut(s)	376, 503
Mva1269I	GAATGC	2 cut(s)	259, 451
MvaI	CCWGG	1 cut(s)	666
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	473, 666
NciI	CCSGG	2 cut(s)	327, 540
NheI	GCTAGC	1 cut(s)	925
NlaIII	CATG	3 cut(s)	185, 296, 660
NmuCI	GTSAC	2 cut(s)	629, 836
NsiI	ATGCAT	1 cut(s)	867
NspI	RCATGY	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	10
PciI	ACATGT	1 cut(s)	181
PctI	GAATGC	2 cut(s)	259, 451
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	4 cut(s)	103, 121, 389, 755
PkrI	GCNGC	2 cut(s)	259, 469
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PscI	ACATGT	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspPI	GGNCC	1 cut(s)	605
PspXI	VCTCGAGB	1 cut(s)	10
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PvuII	CAGCTG	1 cut(s)	933
RsaI	GTAC	2 cut(s)	5, 274
RsaNI	GTAC	2 cut(s)	4, 273
SaqAI	TTAA	4 cut(s)	69, 399, 525, 815
SatI	GCNGC	2 cut(s)	258, 468
Sau96I	GGNCC	1 cut(s)	605
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	3 cut(s)	327, 540, 666
SfaNI	GCATC	1 cut(s)	567
Sfr274I	CTCGAG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	605
SlaI	CTCGAG	1 cut(s)	10
SmlI	CTYRAG	3 cut(s)	10, 248, 894
SmoI	CTYRAG	3 cut(s)	10, 248, 894
Sse9I	AATT	7 cut(s)	50, 376, 393, 503, 518, 676, 774
SsiI	CCGC	2 cut(s)	353, 796
SspMI	CTAG	2 cut(s)	174, 926
StyD4I	CCNGG	3 cut(s)	325, 538, 664
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	791
TaiI	ACGT	2 cut(s)	69, 318
TaqI	TCGA	2 cut(s)	11, 919
TasI	AATT	7 cut(s)	50, 376, 393, 503, 518, 676, 774
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	4 cut(s)	103, 121, 389, 755
Tru1I	TTAA	4 cut(s)	69, 399, 525, 815
Tru9I	TTAA	4 cut(s)	69, 399, 525, 815
TseFI	GTSAC	2 cut(s)	629, 836
TseI	GCWGC	2 cut(s)	257, 467
Tsp45I	GTSAC	2 cut(s)	629, 836
TspDTI	ATGAA	6 cut(s)	36, 554, 645, 768, 861, 920
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	3 cut(s)	50, 518, 774
XceI	RCATGY	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	2 cut(s)	174, 926
ZrmI	AGTACT	1 cut(s)	274
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.