Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010564

Physical Location & Seq

Genomic Coordinates Forward (+)

11035361 .. 11039829

Gene Structure 4469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG131200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAAGGCGAGGATGGTTATGTTCCGGTGGAAGCTAAGGATTTTTATAAGGACTATAGTCCTCGGAGGACTATCTCGCCCGAGATTGTGGAGCTCGGAGAGGATATCACGAGTACTAGTGATATCACTCCAGGCAGCACTAGCAGAGATATTGTAGGTGTCAATGATGTTTATGTGGCTGTTGGTAAAGATGACACTGATGTTCTGAAATGGGTGCTTGATAATGCTGTTTCGCCTGGTTCTCGGGTCTTTCTTGTCCATGTCTTCCCTCCAATCACCCACATCCCTACACCAGTTGGACGATTATCAATGAGCCAATTAAGTGAAGATCAAGTGAGATTTTACGTCAATGAAGCGAATAATAAGAGGAAGAACCTCTTGCAGAAATACGTCTGCTTATGCAACAATGCTAAGGTAACAGTGGACACAATGCTCCTGGAGAGCAGCGACAGAACAAAAGCAATCACTGATCTTATGTCCGTTCTTAGGATCACTCACCTTGTCATAGGAGCCAAAAGAGCACCTCATTCAAGGTTAAATTATGTTGTTCACGCGATCAGGAAGAAAAAATTATCACTAGGAGAATTTGTTAGGAAAAGTGCACCTGGGTATTGTCAGGTTAGCATCATTCATGAAGGCAATAAGGTAATGGTTGATGAACAAAGGCCTCCCCATAGCGAAAGAAGCATCTTCGAGTGGGCATGCTTTCCAGGCAAGTTCTTTTTGCAGACCAACATATCTACTTCAAGCATTTTTGTGAAGAAATTAATTATAATATGCAGGTTGCATACATTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

266

Amino Acids

29.93

Weight (kDa)

8.72

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06120 FvH4_5g06120 FvH4_5g06120 FvH4_5g06120
malus_domestica	MD06G1166500.v1.1 MD14G1172200.v1.1
prunus_persica	Prupe.5G166500_v2.0.a1 Prupe.5G166500_v2.0.a1
pyrus_communis	pycom06g14920
rosa_chinensis	RchiOBHm_Chr7g0192691
rosa_laevigata	RLG00000004336
rosa_multiflora	Rmu_sc0002040.1_g000010 Rmu_sc0002040.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262740
rosa_rugosa	Rorug07G0003900 Rorug07G0004000
rosa_samantha	Rh7AG128900 Rh7BG130400 Rh7CG133800 Rh7DG131200
rosa_wichuraiana	Rw7G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	48, 773
Acc36I	ACCTGC	1 cut(s)	771
AccII	CGCG	1 cut(s)	554
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	584
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	486
AgsI	TTSAA	2 cut(s)	531, 747
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	5 cut(s)	130, 235, 435, 604, 709
AluBI	AGCT	2 cut(s)	35, 94
AluI	AGCT	2 cut(s)	35, 94
Alw21I	GWGCWC	3 cut(s)	96, 523, 604
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	2 cut(s)	80, 243
AoxI	GGCC	1 cut(s)	665
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	2 cut(s)	135, 444
ApoI	RAATTY	1 cut(s)	584
AseI	ATTAAT	1 cut(s)	767
AsuHPI	GGTGA	2 cut(s)	268, 488
AvaI	CYCGRG	2 cut(s)	80, 243
BaeGI	GKGCMC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	3 cut(s)	96, 523, 604
BbvI	GCAGC	2 cut(s)	147, 456
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	5 cut(s)	132, 237, 437, 606, 711
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	3 cut(s)	117, 141, 578
BfmI	CTRYAG	1 cut(s)	55
BfuAI	ACCTGC	1 cut(s)	771
BisI	GCNGC	2 cut(s)	136, 445
BlsI	GCNGC	2 cut(s)	137, 446
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	5 cut(s)	132, 237, 437, 606, 711
BmeT110I	CYCGRG	2 cut(s)	80, 243
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	5 cut(s)	132, 237, 437, 606, 711
BmsI	GCATC	2 cut(s)	633, 696
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	256
BpmI	CTGGAG	2 cut(s)	114, 458
Bpu10I	CCTNAGC	2 cut(s)	36, 411
BsaJI	CCNNGG	2 cut(s)	62, 605
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	293
BseBI	CCWGG	5 cut(s)	132, 237, 437, 606, 711
BseDI	CCNNGG	2 cut(s)	62, 605
BseGI	GGATG	2 cut(s)	19, 282
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	2 cut(s)	147, 456
Bsh1236I	CGCG	1 cut(s)	554
BshFI	GGCC	1 cut(s)	667
BsiHKAI	GWGCWC	3 cut(s)	96, 523, 604
BsiHKCI	CYCGRG	2 cut(s)	80, 243
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	486
BsnI	GGCC	1 cut(s)	667
BsoBI	CYCGRG	2 cut(s)	80, 243
Bsp1286I	GDGCHC	3 cut(s)	96, 523, 604
Bsp143I	GATC	4 cut(s)	328, 469, 489, 555
BspANI	GGCC	1 cut(s)	667
BspFNI	CGCG	1 cut(s)	554
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	771
BspPI	GGATC	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	62, 605
BssMI	GATC	4 cut(s)	328, 469, 489, 555
BssSI	CACGAG	1 cut(s)	109
Bst2BI	CACGAG	1 cut(s)	109
Bst2UI	CCWGG	5 cut(s)	132, 237, 437, 606, 711
Bst4CI	ACNGT	2 cut(s)	421, 798
BstC8I	GCNNGC	1 cut(s)	703
BstDEI	CTNAG	3 cut(s)	36, 411, 485
BstF5I	GGATG	2 cut(s)	19, 282
BstFNI	CGCG	1 cut(s)	554
BstKTI	GATC	4 cut(s)	331, 472, 492, 558
BstMBI	GATC	4 cut(s)	328, 469, 489, 555
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 518, 684, 711
BstNI	CCWGG	5 cut(s)	132, 237, 437, 606, 711
BstNSI	RCATGY	1 cut(s)	705
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSCI	CCNGG	5 cut(s)	130, 235, 435, 604, 709
BstSFI	CTRYAG	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	604
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	2 cut(s)	147, 456
BstV2I	GAAGAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	667
BtsCI	GGATG	2 cut(s)	19, 282
BtsIMutI	CAGTG	3 cut(s)	195, 426, 465
BveI	ACCTGC	1 cut(s)	771
Cac8I	GCNNGC	1 cut(s)	703
CciI	TCATGA	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	3 cut(s)	260, 632, 702
CviJI	RGCY	6 cut(s)	35, 94, 179, 315, 512, 667
CviKI_1	RGCY	6 cut(s)	35, 94, 179, 315, 512, 667
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	3 cut(s)	36, 411, 485
DpnI	GATC	4 cut(s)	330, 471, 491, 557
DpnII	GATC	4 cut(s)	328, 469, 489, 555
Ecl136II	GAGCTC	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	96
Eco32I	GATATC	2 cut(s)	106, 124
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	2 cut(s)	80, 243
EcoICRI	GAGCTC	1 cut(s)	94
EcoRII	CCWGG	5 cut(s)	130, 235, 435, 604, 709
EcoRV	GATATC	2 cut(s)	106, 124
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	3 cut(s)	263, 635, 705
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	3 cut(s)	259, 631, 701
Fnu4HI	GCNGC	2 cut(s)	136, 445
FokI	GGATG	2 cut(s)	26, 269
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	136, 445
FspBI	CTAG	3 cut(s)	117, 141, 578
GluI	GCNGC	2 cut(s)	136, 445
GsuI	CTGGAG	2 cut(s)	114, 458
HaeIII	GGCC	1 cut(s)	667
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	3 cut(s)	263, 635, 705
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	268, 488
Hpy166II	GTNNAC	3 cut(s)	424, 550, 602
Hpy188I	TCNGA	3 cut(s)	66, 98, 207
Hpy188III	TCNNGA	3 cut(s)	109, 559, 632
Hpy8I	GTNNAC	3 cut(s)	424, 550, 602
HpyAV	CCTTC	1 cut(s)	629
HpyCH4III	ACNGT	2 cut(s)	421, 798
HpyCH4IV	ACGT	2 cut(s)	345, 390
HpyCH4V	TGCA	6 cut(s)	382, 402, 602, 727, 780, 787
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 518, 684, 711
HpyF3I	CTNAG	3 cut(s)	36, 411, 485
HpySE526I	ACGT	2 cut(s)	345, 390
Hsp92II	CATG	3 cut(s)	263, 635, 705
Kzo9I	GATC	4 cut(s)	328, 469, 489, 555
LmnI	GCTCC	3 cut(s)	91, 438, 509
Lsp1109I	GCAGC	2 cut(s)	147, 456
LweI	GCATC	2 cut(s)	633, 696
MaeI	CTAG	3 cut(s)	117, 141, 578
MaeII	ACGT	2 cut(s)	345, 390
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	4 cut(s)	330, 471, 491, 557
MboI	GATC	4 cut(s)	328, 469, 489, 555
MboII	GAAGA	6 cut(s)	256, 338, 382, 574, 682, 772
MhlI	GDGCHC	3 cut(s)	96, 523, 604
MluCI	AATT	6 cut(s)	317, 538, 569, 584, 764, 768
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	9 cut(s)	4, 60, 72, 94, 279, 360, 386, 534, 678
MseI	TTAA	3 cut(s)	320, 536, 767
MslI	CAYNNNNRTG	2 cut(s)	755, 796
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	5 cut(s)	132, 237, 437, 606, 711
MvaI	CCWGG	5 cut(s)	132, 237, 437, 606, 711
MvnI	CGCG	1 cut(s)	554
MwoI	GCNNNNNNNGC	4 cut(s)	141, 518, 684, 711
NdeII	GATC	4 cut(s)	328, 469, 489, 555
NlaIII	CATG	3 cut(s)	263, 635, 705
NlaIV	GGNNCC	1 cut(s)	511
NspI	RCATGY	1 cut(s)	705
PaeI	GCATGC	1 cut(s)	705
PagI	TCATGA	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	667
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	137, 446
PshAI	GACNNNNGTC	1 cut(s)	57
PshBI	ATTAAT	1 cut(s)	767
PsiI	TTATAA	2 cut(s)	48, 773
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	5 cut(s)	130, 235, 435, 604, 709
PspGI	CCWGG	5 cut(s)	130, 235, 435, 604, 709
PspN4I	GGNNCC	1 cut(s)	511
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	2 cut(s)	755, 796
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	320, 536, 767
SatI	GCNGC	2 cut(s)	136, 445
Sau3AI	GATC	4 cut(s)	328, 469, 489, 555
ScaI	AGTACT	1 cut(s)	115
ScrFI	CCNGG	5 cut(s)	132, 237, 437, 606, 711
SduI	GDGCHC	3 cut(s)	96, 523, 604
SfaNI	GCATC	2 cut(s)	633, 696
SfcI	CTRYAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	755, 796
SpeI	ACTAGT	1 cut(s)	116
SphI	GCATGC	1 cut(s)	705
Sse9I	AATT	6 cut(s)	317, 538, 569, 584, 764, 768
SseBI	AGGCCT	1 cut(s)	667
SspMI	CTAG	3 cut(s)	117, 141, 578
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	667
StyD4I	CCNGG	5 cut(s)	130, 235, 435, 604, 709
TaaI	ACNGT	2 cut(s)	421, 798
TaiI	ACGT	2 cut(s)	348, 393
TaqI	TCGA	1 cut(s)	693
TasI	AATT	6 cut(s)	317, 538, 569, 584, 764, 768
TatI	WGTACW	1 cut(s)	113
Tru1I	TTAA	3 cut(s)	320, 536, 767
Tru9I	TTAA	3 cut(s)	320, 536, 767
TscAI	CASTG	3 cut(s)	202, 426, 472
TseI	GCWGC	2 cut(s)	135, 444
TspDTI	ATGAA	4 cut(s)	366, 620, 648, 672
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	3 cut(s)	202, 426, 472
VneI	GTGCAC	1 cut(s)	600
VspI	ATTAAT	1 cut(s)	767
XapI	RAATTY	1 cut(s)	584
XceI	RCATGY	1 cut(s)	705
XspI	CTAG	3 cut(s)	117, 141, 578
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.