Rmu_sc0002040.1_g000010

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002040.1
OG0010564
Physical Location & Seq
Forward (+)
35498 .. 35818
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002040.1_g000010.1.cds

Sequence Viewer

Length: 321 bp
atggaaggcgaggatggttatgttccggtggaagctaaggatttttataaggactacagtcctcgaaagactttctcgcccgagattgtggagctcggtgaggatatcacgagtactagtgatatcactccaggcagcactagcagagatattgtaggtgtcaatgatgtttatgtggctgttggtaaagatgacactgatgttctgaaatgggtgcttgataatgctgtttcgcctggttctcgggtctttcttgtccatgtcttccctccaatcacccacatccctacaccaggtaatgccagtgtcagtctcttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

106

Amino Acids

11.48

Weight (kDa)

4.36

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 293
AhlI ACTAGT 1 cut(s) 116
AjnI CCWGG 3 cut(s) 130, 235, 292
AluBI AGCT 2 cut(s) 35, 94
AluI AGCT 2 cut(s) 35, 94
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 317
Ama87I CYCGRG 2 cut(s) 80, 243
ApeKI GCWGC 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 110, 268
AvaI CYCGRG 2 cut(s) 80, 243
BanII GRGCYC 1 cut(s) 96
BauI CACGAG 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 8
BciT130I CCWGG 3 cut(s) 132, 237, 294
BcoDI GTCTC 1 cut(s) 317
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 2 cut(s) 117, 141
BfmI CTRYAG 1 cut(s) 55
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 3 cut(s) 132, 237, 294
BmeT110I CYCGRG 2 cut(s) 80, 243
BmrFI CCNGG 3 cut(s) 132, 237, 294
BoxI GACNNNNGTC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 303
BseBI CCWGG 3 cut(s) 132, 237, 294
BseGI GGATG 2 cut(s) 19, 282
BseLI CCNNNNNNNGG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 303
BseXI GCAGC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 2 cut(s) 80, 243
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 317
BsoBI CYCGRG 2 cut(s) 80, 243
Bsp1286I GDGCHC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 303
BssSI CACGAG 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 109
Bst2UI CCWGG 3 cut(s) 132, 237, 294
Bst4CI ACNGT 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 36
BstENI CCTNNNNNAGG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 19, 282
BstMAI GTCTC 1 cut(s) 317
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 3 cut(s) 132, 237, 294
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 3 cut(s) 130, 235, 292
BstSFI CTRYAG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 256
BtsCI GGATG 2 cut(s) 19, 282
BtsIMutI CAGTG 2 cut(s) 195, 310
CsiI ACCWGGT 1 cut(s) 292
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 260
CviJI RGCY 3 cut(s) 35, 94, 179
CviKI_1 RGCY 3 cut(s) 35, 94, 179
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 96
Eco32I GATATC 2 cut(s) 106, 124
Eco53kI GAGCTC 1 cut(s) 94
Eco88I CYCGRG 2 cut(s) 80, 243
EcoICRI GAGCTC 1 cut(s) 94
EcoNI CCTNNNNNAGG 1 cut(s) 291
EcoRII CCWGG 3 cut(s) 130, 235, 292
EcoRV GATATC 2 cut(s) 106, 124
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 1 cut(s) 263
FaiI YATR 4 cut(s) 21, 48, 174, 261
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 2 cut(s) 26, 269
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 2 cut(s) 117, 141
GluI GCNGC 1 cut(s) 136
GsuI CTGGAG 1 cut(s) 114
HapII CCGG 1 cut(s) 26
Hin1II CATG 1 cut(s) 263
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 110, 268
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 1 cut(s) 263
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 8 cut(s) 39, 117, 144, 222, 249, 279, 306, 316
Lsp1109I GCAGC 1 cut(s) 147
MabI ACCWGGT 1 cut(s) 292
MaeI CTAG 2 cut(s) 117, 141
MboII GAAGA 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 96
MnlI CCTC 4 cut(s) 4, 72, 94, 279
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 3 cut(s) 132, 237, 294
MvaI CCWGG 3 cut(s) 132, 237, 294
MwoI GCNNNNNNNGC 1 cut(s) 141
NlaIII CATG 1 cut(s) 263
PkrI GCNGC 1 cut(s) 137
PshAI GACNNNNGTC 1 cut(s) 57
PsiI TTATAA 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 3 cut(s) 130, 235, 292
PspGI CCWGG 3 cut(s) 130, 235, 292
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SacI GAGCTC 1 cut(s) 96
SatI GCNGC 1 cut(s) 136
ScaI AGTACT 1 cut(s) 115
ScrFI CCNGG 3 cut(s) 132, 237, 294
SduI GDGCHC 1 cut(s) 96
SetI ASST 4 cut(s) 37, 96, 160, 298
SexAI ACCWGGT 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 55
SpeI ACTAGT 1 cut(s) 116
SspMI CTAG 2 cut(s) 117, 141
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 3 cut(s) 130, 235, 292
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 64
TatI WGTACW 1 cut(s) 113
TscAI CASTG 2 cut(s) 202, 310
TseI GCWGC 1 cut(s) 135
TspRI CASTG 2 cut(s) 202, 310
XagI CCTNNNNNAGG 1 cut(s) 291
XspI CTAG 2 cut(s) 117, 141
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.