Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010564

Physical Location & Seq

Genomic Coordinates Reverse (-)

58420114 .. 58421636

Gene Structure 1523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004336

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAGGCGAGGATGGTTATGTTCCGGTGGAAGCCAAGGATTTTTATAAGGACTATAGTCCTCGACGGACTTTCTCGCCCGAGATTGTGGAGCTCGGAGAGGATATCACGAGTACTAGTGATATCACTCCAGGCAGCACTAGCAGAGATATTGTAGGTGTCAATGATGTTTATGTGGCTGTTGGTAAAGATGACACTGATGTTCTGAAATGGGTGCTTGATAATGCTGTTTCGCCTGGTTCTCGGGTCTTTCTTGTCCATGTCTTCCCTCCAATCACCCACATCCCTACACCAGTTGGACGATTATCAACGAGCCAATTAAGTAAAGATCAAGTGAGATTTTACGTCAATGAAGAGAATAATAAGAGGAAGAACCTCTTGCAGAAATACGTCTGCTTATGCAACAATGCTAAGGTAAAAGTGGACACTATGCTCCTGGAGAGCAGCGACAGAACAAAAGCAATCACTGATCTTCTGTCCGTTCTTAGGATCACTCACCTTGTCATAGGAACCAAAAGAGCACCTCATTCAAGGAGGAAAAAATTATCACTAGGAGAATTTGTTAGGAGAAGTGCACCTGGGTATTGTCAGGTTAGCATCATTCATGAAGGCAATAAGGTAATGGTTGATGAACAAAGGCCTCCCCATAGCGAAAGAAGCATCTTCGAGTGGGCATGCTTTCCAGTGCGTGGGAAAAATCCCAGGATGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

238

Amino Acids

26.73

Weight (kDa)

8.82

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06120 FvH4_5g06120 FvH4_5g06120 FvH4_5g06120
malus_domestica	MD06G1166500.v1.1 MD14G1172200.v1.1
prunus_persica	Prupe.5G166500_v2.0.a1 Prupe.5G166500_v2.0.a1
pyrus_communis	pycom06g14920
rosa_chinensis	RchiOBHm_Chr7g0192691
rosa_laevigata	RLG00000004336
rosa_multiflora	Rmu_sc0002040.1_g000010 Rmu_sc0002040.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262740
rosa_rugosa	Rorug07G0003900 Rorug07G0004000
rosa_samantha	Rh7AG128900 Rh7BG130400 Rh7CG133800 Rh7DG131200
rosa_wichuraiana	Rw7G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
AccB7I	CCANNNNNTGG	1 cut(s)	689
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	557
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	486, 689
AgsI	TTSAA	1 cut(s)	531
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	5 cut(s)	130, 235, 435, 577, 701
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	3 cut(s)	96, 523, 577
Alw44I	GTGCAC	1 cut(s)	573
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	2 cut(s)	80, 243
AoxI	GGCC	1 cut(s)	638
ApaLI	GTGCAC	1 cut(s)	573
ApeKI	GCWGC	2 cut(s)	135, 444
ApoI	RAATTY	1 cut(s)	557
AsuHPI	GGTGA	2 cut(s)	268, 488
AvaI	CYCGRG	2 cut(s)	80, 243
BaeGI	GKGCMC	1 cut(s)	577
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	256
Bbv12I	GWGCWC	3 cut(s)	96, 523, 577
BbvI	GCAGC	2 cut(s)	147, 456
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	5 cut(s)	132, 237, 437, 579, 703
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	3 cut(s)	117, 141, 551
BfmI	CTRYAG	1 cut(s)	55
BisI	GCNGC	2 cut(s)	136, 445
BlsI	GCNGC	2 cut(s)	137, 446
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	5 cut(s)	132, 237, 437, 579, 703
BmeT110I	CYCGRG	2 cut(s)	80, 243
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	5 cut(s)	132, 237, 437, 579, 703
BmsI	GCATC	2 cut(s)	606, 669
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	256
BpmI	CTGGAG	2 cut(s)	114, 458
Bpu10I	CCTNAGC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	36, 578, 701
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 689
Bse1I	ACTGG	2 cut(s)	293, 683
BseBI	CCWGG	5 cut(s)	132, 237, 437, 579, 703
BseDI	CCNNGG	3 cut(s)	36, 578, 701
BseGI	GGATG	3 cut(s)	19, 282, 711
BseLI	CCNNNNNNNGG	2 cut(s)	486, 689
BseNI	ACTGG	2 cut(s)	293, 683
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	2 cut(s)	147, 456
BshFI	GGCC	1 cut(s)	640
BsiHKAI	GWGCWC	3 cut(s)	96, 523, 577
BsiHKCI	CYCGRG	2 cut(s)	80, 243
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	486, 689
BsnI	GGCC	1 cut(s)	640
BsoBI	CYCGRG	2 cut(s)	80, 243
Bsp1286I	GDGCHC	3 cut(s)	96, 523, 577
Bsp143I	GATC	3 cut(s)	328, 469, 489
BspANI	GGCC	1 cut(s)	640
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	293, 683
BssECI	CCNNGG	3 cut(s)	36, 578, 701
BssMI	GATC	3 cut(s)	328, 469, 489
BssSI	CACGAG	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	109
Bst2UI	CCWGG	5 cut(s)	132, 237, 437, 579, 703
Bst6I	CTCTTC	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	2 cut(s)	411, 485
BstF5I	GGATG	3 cut(s)	19, 282, 711
BstKTI	GATC	3 cut(s)	331, 472, 492
BstMBI	GATC	3 cut(s)	328, 469, 489
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 657
BstNI	CCWGG	5 cut(s)	132, 237, 437, 579, 703
BstNSI	RCATGY	1 cut(s)	678
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSCI	CCNGG	5 cut(s)	130, 235, 435, 577, 701
BstSFI	CTRYAG	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	577
BstV1I	GCAGC	2 cut(s)	147, 456
BstV2I	GAAGAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	640
BtsCI	GGATG	3 cut(s)	19, 282, 711
BtsIMutI	CAGTG	3 cut(s)	195, 465, 690
Cac8I	GCNNGC	1 cut(s)	676
CciI	TCATGA	1 cut(s)	604
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	3 cut(s)	260, 605, 675
CviJI	RGCY	5 cut(s)	35, 94, 179, 315, 640
CviKI_1	RGCY	5 cut(s)	35, 94, 179, 315, 640
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	2 cut(s)	411, 485
DpnI	GATC	3 cut(s)	330, 471, 491
DpnII	GATC	3 cut(s)	328, 469, 489
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	640
Eco24I	GRGCYC	1 cut(s)	96
Eco32I	GATATC	2 cut(s)	106, 124
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	2 cut(s)	80, 243
EcoICRI	GAGCTC	1 cut(s)	94
EcoRII	CCWGG	5 cut(s)	130, 235, 435, 577, 701
EcoRV	GATATC	2 cut(s)	106, 124
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	3 cut(s)	263, 608, 678
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	3 cut(s)	259, 604, 674
Fnu4HI	GCNGC	2 cut(s)	136, 445
FokI	GGATG	2 cut(s)	26, 269
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	136, 445
FspBI	CTAG	3 cut(s)	117, 141, 551
GluI	GCNGC	2 cut(s)	136, 445
GsuI	CTGGAG	2 cut(s)	114, 458
HaeIII	GGCC	1 cut(s)	640
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	3 cut(s)	263, 608, 678
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	268, 488
Hpy166II	GTNNAC	2 cut(s)	424, 575
Hpy188I	TCNGA	2 cut(s)	98, 207
Hpy188III	TCNNGA	2 cut(s)	109, 605
Hpy8I	GTNNAC	2 cut(s)	424, 575
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	602
HpyCH4IV	ACGT	2 cut(s)	345, 390
HpyCH4V	TGCA	3 cut(s)	382, 402, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 657
HpyF3I	CTNAG	2 cut(s)	411, 485
HpySE526I	ACGT	2 cut(s)	345, 390
Hsp92II	CATG	3 cut(s)	263, 608, 678
Kzo9I	GATC	3 cut(s)	328, 469, 489
LmnI	GCTCC	2 cut(s)	91, 438
Lsp1109I	GCAGC	2 cut(s)	147, 456
LweI	GCATC	2 cut(s)	606, 669
MaeI	CTAG	3 cut(s)	117, 141, 551
MaeII	ACGT	2 cut(s)	345, 390
MalI	GATC	3 cut(s)	330, 471, 491
MboI	GATC	3 cut(s)	328, 469, 489
MboII	GAAGA	5 cut(s)	256, 365, 382, 464, 655
MhlI	GDGCHC	3 cut(s)	96, 523, 577
MluCI	AATT	3 cut(s)	317, 542, 557
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	9 cut(s)	4, 72, 94, 279, 360, 386, 528, 534, 651
MseI	TTAA	2 cut(s)	320, 712
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	5 cut(s)	132, 237, 437, 579, 703
MvaI	CCWGG	5 cut(s)	132, 237, 437, 579, 703
MwoI	GCNNNNNNNGC	2 cut(s)	141, 657
NdeII	GATC	3 cut(s)	328, 469, 489
NlaIII	CATG	3 cut(s)	263, 608, 678
NlaIV	GGNNCC	1 cut(s)	511
NspI	RCATGY	1 cut(s)	678
PaeI	GCATGC	1 cut(s)	678
PagI	TCATGA	1 cut(s)	604
PceI	AGGCCT	1 cut(s)	640
PflMI	CCANNNNNTGG	1 cut(s)	689
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	137, 446
PshAI	GACNNNNGTC	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	5 cut(s)	130, 235, 435, 577, 701
PspGI	CCWGG	5 cut(s)	130, 235, 435, 577, 701
PspN4I	GGNNCC	1 cut(s)	511
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	320, 712
SatI	GCNGC	2 cut(s)	136, 445
Sau3AI	GATC	3 cut(s)	328, 469, 489
ScaI	AGTACT	1 cut(s)	115
ScrFI	CCNGG	5 cut(s)	132, 237, 437, 579, 703
SduI	GDGCHC	3 cut(s)	96, 523, 577
SfaNI	GCATC	2 cut(s)	606, 669
SfcI	CTRYAG	1 cut(s)	55
SpeI	ACTAGT	1 cut(s)	116
SphI	GCATGC	1 cut(s)	678
Sse9I	AATT	3 cut(s)	317, 542, 557
SseBI	AGGCCT	1 cut(s)	640
SspMI	CTAG	3 cut(s)	117, 141, 551
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	640
StyD4I	CCNGG	5 cut(s)	130, 235, 435, 577, 701
StyI	CCWWGG	1 cut(s)	36
TaiI	ACGT	2 cut(s)	348, 393
TaqI	TCGA	2 cut(s)	64, 666
TasI	AATT	3 cut(s)	317, 542, 557
TatI	WGTACW	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	320, 712
Tru9I	TTAA	2 cut(s)	320, 712
TscAI	CASTG	3 cut(s)	202, 472, 690
TseI	GCWGC	2 cut(s)	135, 444
TspDTI	ATGAA	4 cut(s)	366, 593, 621, 645
TspGWI	ACGGA	2 cut(s)	82, 469
TspRI	CASTG	3 cut(s)	202, 472, 690
Van91I	CCANNNNNTGG	1 cut(s)	689
VneI	GTGCAC	1 cut(s)	573
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	1 cut(s)	678
XspI	CTAG	3 cut(s)	117, 141, 551
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.