Rroxscaffold_3G00262740

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010564
Physical Location & Seq
Reverse (-)
56728795 .. 56730835
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262740.1

Sequence Viewer

Length: 714 bp
ATGGAAGGCGGGGATGGTTATGTTCCGGTGGAAGCTAAGGATTTTTATAAGGACTATAGTCATCGAAGGACTTTCTCGCCCGAGATTGTGGAGCTCGGAGAGGATATCACGAGTACTAGTGATATCACTCCAGGCAGCACTAGCAGAGATATTGTAGGTGTCAATGATGTTTATGTGGCTGTTGGTAAAGATGACACTGATGTTCTGAAATGGGTGCTTGATAATGCTGTTTCGCCAGGTTCTCGGGTCTTTCTTGTCCATGTCTTCCCTCCAATCACCCACATCCCTACACCAGTTGGACGATTATCAATGAGCCAATTAAGTGAAGATCAAGTGAGATTTTACGTCAATGAAGAGAATAATAAGAGGAAGAACCTCTTGCAGAAATACGTCTGCTTATGCAACAATGCTAAGGTAACAGTGGACACAATGCTCCTGGAGAGCAGCGACAGAACAAAAGCAATCACTGATCTTATGTCCGTTCTTAGGATCACTCACCTTGTCATTGGAGCCAAAAGAGCACCTCATTCAAGAGATAAGCTCATGTCTGGTAAATGTGTTACATCAAAGCAGTCAATTAACAGGTTAGCATCATTCATGAAGGCAATAAGAATTAGAGTTGAGAAAACAGATCGAAGATTGAATATGGAAGAAAATGATAGCAGAGCGAGTGTCAAGTGTTTGAAGCGATCTCAAATGTCAACCACTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

237

Amino Acids

26.66

Weight (kDa)

8.82

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 497
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 3 cut(s) 531, 643, 685
AhlI ACTAGT 1 cut(s) 116
AjnI CCWGG 3 cut(s) 130, 235, 435
AluBI AGCT 3 cut(s) 35, 94, 541
AluI AGCT 3 cut(s) 35, 94, 541
Alw21I GWGCWC 2 cut(s) 96, 523
AlwI GGATC 1 cut(s) 497
Ama87I CYCGRG 2 cut(s) 80, 243
ApeKI GCWGC 2 cut(s) 135, 444
AsuHPI GGTGA 2 cut(s) 268, 488
AvaI CYCGRG 2 cut(s) 80, 243
BanII GRGCYC 1 cut(s) 96
BauI CACGAG 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 96, 523
BbvI GCAGC 2 cut(s) 147, 456
BccI CCATC 1 cut(s) 8
BciT130I CCWGG 3 cut(s) 132, 237, 437
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 2 cut(s) 117, 141
BfmI CTRYAG 1 cut(s) 55
BisI GCNGC 2 cut(s) 136, 445
BlsI GCNGC 2 cut(s) 137, 446
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 3 cut(s) 132, 237, 437
BmeT110I CYCGRG 2 cut(s) 80, 243
BmiI GGNNCC 1 cut(s) 511
BmrFI CCNGG 3 cut(s) 132, 237, 437
BmsI GCATC 1 cut(s) 599
BoxI GACNNNNGTC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 525, 557
BpmI CTGGAG 2 cut(s) 114, 458
Bpu10I CCTNAGC 2 cut(s) 36, 411
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse1I ACTGG 1 cut(s) 293
BseBI CCWGG 3 cut(s) 132, 237, 437
BseGI GGATG 2 cut(s) 19, 282
BseLI CCNNNNNNNGG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 147, 456
BsiHKAI GWGCWC 2 cut(s) 96, 523
BsiHKCI CYCGRG 2 cut(s) 80, 243
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 486
BsoBI CYCGRG 2 cut(s) 80, 243
Bsp1286I GDGCHC 2 cut(s) 96, 523
Bsp143I GATC 5 cut(s) 328, 469, 489, 631, 689
BspACI CCGC 1 cut(s) 9
BspHI TCATGA 1 cut(s) 597
BspLI GGNNCC 1 cut(s) 511
BspPI GGATC 1 cut(s) 497
BsrI ACTGG 1 cut(s) 293
BssMI GATC 5 cut(s) 328, 469, 489, 631, 689
BssSI CACGAG 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 109
Bst2UI CCWGG 3 cut(s) 132, 237, 437
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 36, 411, 485
BstF5I GGATG 2 cut(s) 19, 282
BstKTI GATC 5 cut(s) 331, 472, 492, 634, 692
BstMBI GATC 5 cut(s) 328, 469, 489, 631, 689
BstMWI GCNNNNNNNGC 2 cut(s) 141, 518
BstNI CCWGG 3 cut(s) 132, 237, 437
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 3 cut(s) 130, 235, 435
BstSFI CTRYAG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 147, 456
BstV2I GAAGAC 1 cut(s) 256
BtsCI GGATG 2 cut(s) 19, 282
BtsIMutI CAGTG 4 cut(s) 195, 426, 465, 705
CciI TCATGA 1 cut(s) 597
Csp6I GTAC 1 cut(s) 114
CviAII CATG 3 cut(s) 260, 544, 598
CviJI RGCY 6 cut(s) 35, 94, 179, 315, 512, 541
CviKI_1 RGCY 6 cut(s) 35, 94, 179, 315, 512, 541
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 3 cut(s) 36, 411, 485
DpnI GATC 5 cut(s) 330, 471, 491, 633, 691
DpnII GATC 5 cut(s) 328, 469, 489, 631, 689
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 96
Eco32I GATATC 2 cut(s) 106, 124
Eco53kI GAGCTC 1 cut(s) 94
Eco88I CYCGRG 2 cut(s) 80, 243
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 3 cut(s) 130, 235, 435
EcoRV GATATC 2 cut(s) 106, 124
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 3 cut(s) 263, 547, 601
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FatI CATG 3 cut(s) 259, 543, 597
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 2 cut(s) 136, 445
FokI GGATG 2 cut(s) 26, 269
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 136, 445
FspBI CTAG 2 cut(s) 117, 141
GluI GCNGC 2 cut(s) 136, 445
GsuI CTGGAG 2 cut(s) 114, 458
HapII CCGG 1 cut(s) 26
Hin1II CATG 3 cut(s) 263, 547, 601
HincII GTYRAC 1 cut(s) 702
HindII GTYRAC 1 cut(s) 702
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 268, 488
Hpy166II GTNNAC 2 cut(s) 424, 702
Hpy188I TCNGA 2 cut(s) 98, 207
Hpy188III TCNNGA 3 cut(s) 109, 531, 598
Hpy8I GTNNAC 2 cut(s) 424, 702
HpyAV CCTTC 2 cut(s) 60, 595
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 2 cut(s) 345, 390
HpyCH4V TGCA 2 cut(s) 382, 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 518
HpyF3I CTNAG 3 cut(s) 36, 411, 485
HpySE526I ACGT 2 cut(s) 345, 390
Hsp92II CATG 3 cut(s) 263, 547, 601
Kzo9I GATC 5 cut(s) 328, 469, 489, 631, 689
LmnI GCTCC 3 cut(s) 91, 438, 509
Lsp1109I GCAGC 2 cut(s) 147, 456
LweI GCATC 1 cut(s) 599
MaeI CTAG 2 cut(s) 117, 141
MaeII ACGT 2 cut(s) 345, 390
MaeIII GTNAC 2 cut(s) 415, 559
MalI GATC 5 cut(s) 330, 471, 491, 633, 691
MboI GATC 5 cut(s) 328, 469, 489, 631, 689
MboII GAAGA 6 cut(s) 256, 338, 365, 382, 648, 662
MhlI GDGCHC 2 cut(s) 96, 523
MluCI AATT 3 cut(s) 317, 576, 612
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 5 cut(s) 94, 279, 360, 386, 534
MseI TTAA 2 cut(s) 320, 579
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 3 cut(s) 132, 237, 437
MvaI CCWGG 3 cut(s) 132, 237, 437
MwoI GCNNNNNNNGC 2 cut(s) 141, 518
NdeII GATC 5 cut(s) 328, 469, 489, 631, 689
NlaIII CATG 3 cut(s) 263, 547, 601
NlaIV GGNNCC 1 cut(s) 511
PagI TCATGA 1 cut(s) 597
PfoI TCCNGGA 1 cut(s) 435
PkrI GCNGC 2 cut(s) 137, 446
PshAI GACNNNNGTC 1 cut(s) 57
PsiI TTATAA 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 3 cut(s) 130, 235, 435
PspGI CCWGG 3 cut(s) 130, 235, 435
PspN4I GGNNCC 1 cut(s) 511
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 320, 579
SatI GCNGC 2 cut(s) 136, 445
Sau3AI GATC 5 cut(s) 328, 469, 489, 631, 689
ScaI AGTACT 1 cut(s) 115
ScrFI CCNGG 3 cut(s) 132, 237, 437
SduI GDGCHC 2 cut(s) 96, 523
SfaNI GCATC 1 cut(s) 599
SfcI CTRYAG 1 cut(s) 55
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 3 cut(s) 317, 576, 612
SsiI CCGC 1 cut(s) 9
SspMI CTAG 2 cut(s) 117, 141
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 3 cut(s) 130, 235, 435
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 2 cut(s) 348, 393
TaqI TCGA 2 cut(s) 64, 634
TasI AATT 3 cut(s) 317, 576, 612
TatI WGTACW 1 cut(s) 113
Tru1I TTAA 2 cut(s) 320, 579
Tru9I TTAA 2 cut(s) 320, 579
TscAI CASTG 4 cut(s) 202, 426, 472, 712
TseI GCWGC 2 cut(s) 135, 444
TspDTI ATGAA 3 cut(s) 366, 586, 614
TspGWI ACGGA 1 cut(s) 469
TspRI CASTG 4 cut(s) 202, 426, 472, 712
XspI CTAG 2 cut(s) 117, 141
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.