Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010709

Physical Location & Seq

Genomic Coordinates Forward (+)

4990965 .. 4993498

Gene Structure 2534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGCCGGGCATTAGATCATGTTCATTTCATATTACTCGGAAAAAAGCCAAGGAAAAGAAAGCGGCAAAATTAGGGAGTGTTTATCTCTACAATGCTGTCACCGTAAGGAATGTCTCCGCTACGTGTCCCAAGCTTTCTAGCTCCGTGTTTATCATCTGCAGCAGCTCAGCTTTGTCCAAAACCATGTTGGGTCTTATCCACACATTCCTGAACCTCTCAGCTCCCCCGTTCACCTTCTTCTCCCTCTTGCTTCTCCTGCCGCCGCTTTATCTCTACCGGTTCTTCACCTCTCTCTTGAGCACAATCTTCAGCGAAAACGTCTCCGGCAAGGTCGTCCTCATCACTGGTGCCTCCTCCGGTATCGGCGAGCACTTGGCTTATGAGTATGCAAGGAGAGGGGCACGATTGGCCCTTGTTGGCAGAAGAGAAAACGCACTGAGGGAAGTCGTTGATAGAGCAGTTAACTGTGGTTGTCCAGATGTTATTATGATTGTGGCTGATGTTTCAAAGGCTGAAGACTGCAAGAGACTTGTTGATGAAACTATCAGCCACTTCGGAAGGTTGGATCATCTGGTAAATAATGCTGGGATCACTGCTTGTAGCATGTTGGAAGAGGCCACCGATATCACAAATTTCCGATCCGTAATGGATACGAACTTCTGGGGATCAGTCTATACTACTCATTTTGCAGCTCCACACCTCAGAAACAACAAAGGTAGAATAGTGGCGATTTCTTCTGTTAATTCATGGTTGCCTGCGCCAAGAATGAGCATATATAATGCAAGTAAAGCAGCTATGTCGAGCATGTTTGAGACACTGAGGGTCGAACTGGGGCCAGAAGTTCATATCACAATCGTGACTCCCGGATACATAGAGTCTGAGATGAACAAAGGCAAATACTTGTCGACTGAAGGAAGGATGACCGTAGATCAAGAAATGAGGGATGTTCAAGTCAGCGCAATGCCAGTTGAGAGAGTGCAAGACTGCGCGTATGCAATAGTGAATGGTGTCTGTCGTGGCCAAAGGTGCTTGACAGAGCCAAGGTGGTGGAATGTCGTATATATGTGGAAGGTGTTCTGCCCTGAGCTATTTGAATGGGGTTTCAAATTTTCCCACATGGTTAGGCCCGGAGCCCCGGCTAAAGAAGCACCCAGCAAAAAAATCTTGGACTACACTGGCGTGAAGAATGTCTTGTATCCTGACTCCCTCCACAGTCCTGAGATCAAGACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0016020 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

412

Amino Acids

45.78

Weight (kDa)

9.02

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	110 - 298	5e-50	short chain dehydrogenase
KR	PF08659	112 - 274	5.5e-13	KR domain
adh_short_C2	PF13561	116 - 299	3e-35	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50600 AT5G50700
fragaria_vesca	FvH4_5g08690 FvH4_5g08690 FvH4_5g08690
malus_domestica	MD14G1153000.v1.1
prunus_persica	Prupe.5G148100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0189581 RchiOBHm_Chr7g0189691
rosa_laevigata	RLG00000004597
rosa_multiflora	Rmu_sc0001924.1_g000017
rosa_roxburghii	Rroxscaffold_3G00265260
rosa_rugosa	Rorug06G0499100
rosa_samantha	Rh7AG104200 Rh7BG106800 Rh7CG108900 Rh7DG106200 Rh7DG107300
rosa_wichuraiana	Rw7G008990 Rw7G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	905
AccII	CGCG	1 cut(s)	989
AciI	CCGC	4 cut(s)	62, 117, 260, 263
AclWI	GGATC	4 cut(s)	573, 596, 633, 673
AcoI	YGGCCR	1 cut(s)	1018
AcsI	RAATTY	2 cut(s)	631, 1106
AcuI	CTGAAG	3 cut(s)	292, 534, 930
AflIII	ACRYGT	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	507, 950, 1094, 1105
AleI	CACNNNNGTG	2 cut(s)	854, 1178
AluBI	AGCT	8 cut(s)	133, 141, 165, 170, 221, 692, 794, 1087
AluI	AGCT	8 cut(s)	133, 141, 165, 170, 221, 692, 794, 1087
Alw21I	GWGCWC	2 cut(s)	302, 372
Alw26I	GTCTC	4 cut(s)	118, 325, 520, 806
AlwI	GGATC	4 cut(s)	573, 596, 633, 673
AoxI	GGCC	5 cut(s)	408, 615, 833, 1018, 1124
ApeKI	GCWGC	4 cut(s)	159, 162, 689, 791
ApoI	RAATTY	2 cut(s)	631, 1106
AsiGI	ACCGGT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	1073
AspLEI	GCGC	3 cut(s)	760, 959, 989
AspS9I	GGNCC	3 cut(s)	409, 833, 1125
AsuC2I	CCSGG	4 cut(s)	6, 864, 1128, 1136
AsuHPI	GGTGA	3 cut(s)	91, 223, 277
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	1020
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	1135
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	2 cut(s)	302, 372
BbvI	GCAGC	4 cut(s)	171, 174, 701, 803
BcgI	CGANNNNNNTGC	2 cut(s)	780, 814
BciVI	GTATCC	3 cut(s)	643, 860, 1206
BcnI	CCSGG	4 cut(s)	6, 864, 1128, 1136
BcoDI	GTCTC	4 cut(s)	118, 325, 520, 806
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	157
BfuI	GTATCC	3 cut(s)	643, 860, 1206
BisI	GCNGC	7 cut(s)	63, 160, 163, 260, 263, 690, 792
BlpI	GCTNAGC	1 cut(s)	166
BlsI	GCNGC	7 cut(s)	64, 161, 164, 261, 264, 691, 793
Bme1390I	CCNGG	4 cut(s)	6, 864, 1128, 1136
BmgT120I	GGNCC	3 cut(s)	409, 833, 1125
BmiI	GGNNCC	3 cut(s)	349, 834, 1132
BmrFI	CCNGG	4 cut(s)	6, 864, 1128, 1136
BmrI	ACTGGG	1 cut(s)	839
BmuI	ACTGGG	1 cut(s)	839
BpiI	GAAGAC	1 cut(s)	522
Bpu10I	CCTNAGC	1 cut(s)	1083
Bpu1102I	GCTNAGC	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	316
BpuMI	CCSGG	4 cut(s)	6, 864, 1128, 1136
BsaAI	YACGTR	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	48, 1040, 1134
BsaWI	WCCGGW	2 cut(s)	276, 356
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	4 cut(s)	349, 834, 965, 1180
Bse3DI	GCAATG	1 cut(s)	966
BseDI	CCNNGG	3 cut(s)	48, 1040, 1134
BseGI	GGATG	2 cut(s)	924, 949
BseMI	GCAATG	1 cut(s)	966
BseMII	CTCAG	8 cut(s)	180, 231, 428, 715, 809, 870, 1074, 1209
BseNI	ACTGG	4 cut(s)	349, 834, 965, 1180
BseRI	GAGGAG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	4 cut(s)	171, 174, 701, 803
BseYI	CCCAGC	2 cut(s)	584, 1151
Bsh1236I	CGCG	1 cut(s)	989
BshFI	GGCC	5 cut(s)	410, 617, 835, 1020, 1126
BshNI	GGYRCC	1 cut(s)	347
BshTI	ACCGGT	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	302, 372
BsiSI	CCGG	7 cut(s)	5, 277, 324, 357, 864, 1128, 1136
BslFI	GGGAC	1 cut(s)	111
BsmAI	GTCTC	4 cut(s)	118, 325, 520, 806
BsmBI	CGTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	5 cut(s)	410, 617, 835, 1020, 1126
Bsp1286I	GDGCHC	4 cut(s)	302, 372, 403, 1135
Bsp143I	GATC	7 cut(s)	14, 565, 588, 638, 665, 928, 1221
Bsp1720I	GCTNAGC	1 cut(s)	166
BspACI	CCGC	4 cut(s)	62, 117, 260, 263
BspANI	GGCC	5 cut(s)	410, 617, 835, 1020, 1126
BspCNI	CTCAG	8 cut(s)	179, 230, 429, 714, 810, 871, 1075, 1210
BspFNI	CGCG	1 cut(s)	989
BspLI	GGNNCC	3 cut(s)	349, 834, 1132
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	4 cut(s)	573, 596, 633, 673
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	966
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	4 cut(s)	349, 834, 965, 1180
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	48, 1040, 1134
BssMI	GATC	7 cut(s)	14, 565, 588, 638, 665, 928, 1221
BssT1I	CCWWGG	2 cut(s)	48, 1040
Bst4CI	ACNGT	4 cut(s)	103, 467, 925, 1214
Bst6I	CTCTTC	2 cut(s)	418, 606
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	368, 756
BstDEI	CTNAG	8 cut(s)	166, 217, 437, 701, 818, 879, 1083, 1218
BstF5I	GGATG	2 cut(s)	924, 949
BstFNI	CGCG	1 cut(s)	989
BstHHI	GCGC	3 cut(s)	760, 959, 989
BstKTI	GATC	7 cut(s)	17, 568, 591, 641, 668, 931, 1224
BstMAI	GTCTC	4 cut(s)	118, 325, 520, 806
BstMBI	GATC	7 cut(s)	14, 565, 588, 638, 665, 928, 1221
BstMWI	GCNNNNNNNGC	5 cut(s)	256, 407, 788, 1026, 1145
BstNSI	RCATGY	2 cut(s)	607, 808
BstSCI	CCNGG	4 cut(s)	4, 862, 1126, 1134
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	1 cut(s)	989
BstV1I	GCAGC	4 cut(s)	171, 174, 701, 803
BstV2I	GAAGAC	1 cut(s)	522
BstXI	CCANNNNNNTGG	1 cut(s)	1047
BsuI	GTATCC	3 cut(s)	643, 860, 1206
BsuRI	GGCC	5 cut(s)	410, 617, 835, 1020, 1126
BtsCI	GGATG	2 cut(s)	924, 949
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	5 cut(s)	342, 434, 591, 815, 1173
Cac8I	GCNNGC	2 cut(s)	368, 756
CfoI	GCGC	3 cut(s)	760, 959, 989
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	3 cut(s)	409, 833, 1125
CspAI	ACCGGT	1 cut(s)	276
CviAII	CATG	6 cut(s)	18, 184, 604, 747, 805, 1117
DdeI	CTNAG	8 cut(s)	166, 217, 437, 701, 818, 879, 1083, 1218
DpnI	GATC	7 cut(s)	16, 567, 590, 640, 667, 930, 1223
DpnII	GATC	7 cut(s)	14, 565, 588, 638, 665, 928, 1221
EaeI	YGGCCR	1 cut(s)	1018
Eam1104I	CTCTTC	2 cut(s)	418, 606
EarI	CTCTTC	2 cut(s)	418, 606
Eco130I	CCWWGG	2 cut(s)	48, 1040
Eco24I	GRGCYC	1 cut(s)	1135
Eco32I	GATATC	1 cut(s)	625
Eco57I	CTGAAG	3 cut(s)	292, 534, 930
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	2 cut(s)	48, 1040
EcoT38I	GRGCYC	1 cut(s)	1135
ErhI	CCWWGG	2 cut(s)	48, 1040
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	6 cut(s)	21, 187, 607, 750, 808, 1120
FalI	AAGNNNNNCTT	2 cut(s)	1175, 1207
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	6 cut(s)	17, 183, 603, 746, 804, 1116
FblI	GTMKAC	1 cut(s)	905
Fnu4HI	GCNGC	7 cut(s)	63, 160, 163, 260, 263, 690, 792
FokI	GGATG	2 cut(s)	931, 956
FriOI	GRGCYC	1 cut(s)	1135
Fsp4HI	GCNGC	7 cut(s)	63, 160, 163, 260, 263, 690, 792
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	3 cut(s)	759, 958, 988
GluI	GCNGC	7 cut(s)	63, 160, 163, 260, 263, 690, 792
GsaI	CCCAGC	2 cut(s)	588, 1155
HaeIII	GGCC	5 cut(s)	410, 617, 835, 1020, 1126
HapII	CCGG	7 cut(s)	5, 277, 324, 357, 864, 1128, 1136
HhaI	GCGC	3 cut(s)	760, 959, 989
Hin1II	CATG	6 cut(s)	21, 187, 607, 750, 808, 1120
Hin6I	GCGC	3 cut(s)	758, 957, 987
HinP1I	GCGC	3 cut(s)	758, 957, 987
HincII	GTYRAC	2 cut(s)	463, 906
HindII	GTYRAC	2 cut(s)	463, 906
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	859, 875, 1202
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	7 cut(s)	5, 277, 324, 357, 864, 1128, 1136
HphI	GGTGA	3 cut(s)	91, 223, 277
Hpy166II	GTNNAC	3 cut(s)	231, 463, 906
Hpy188I	TCNGA	5 cut(s)	39, 557, 638, 704, 880
Hpy188III	TCNNGA	8 cut(s)	208, 295, 476, 856, 932, 1199, 1217, 1225
Hpy8I	GTNNAC	3 cut(s)	231, 463, 906
HpyAV	CCTTC	5 cut(s)	244, 552, 905, 909, 1063
HpyCH4III	ACNGT	4 cut(s)	103, 467, 925, 1214
HpyCH4IV	ACGT	2 cut(s)	122, 318
HpyCH4V	TGCA	7 cut(s)	159, 389, 522, 689, 782, 979, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	256, 407, 788, 1026, 1145
HpyF3I	CTNAG	8 cut(s)	166, 217, 437, 701, 818, 879, 1083, 1218
HpySE526I	ACGT	2 cut(s)	122, 318
Hsp92II	CATG	6 cut(s)	21, 187, 607, 750, 808, 1120
HspAI	GCGC	3 cut(s)	758, 957, 987
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	7 cut(s)	14, 565, 588, 638, 665, 928, 1221
LmnI	GCTCC	4 cut(s)	146, 226, 697, 1130
Lsp1109I	GCAGC	4 cut(s)	171, 174, 701, 803
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	2 cut(s)	122, 318
MaeIII	GTNAC	2 cut(s)	97, 856
MalI	GATC	7 cut(s)	16, 567, 590, 640, 667, 930, 1223
MboI	GATC	7 cut(s)	14, 565, 588, 638, 665, 928, 1221
MboII	GAAGA	8 cut(s)	229, 274, 298, 435, 527, 623, 726, 1195
MhlI	GDGCHC	4 cut(s)	302, 372, 403, 1135
MlsI	TGGCCA	1 cut(s)	1020
MluCI	AATT	4 cut(s)	68, 631, 742, 1106
MluNI	TGGCCA	1 cut(s)	1020
MlyI	GAGTC	3 cut(s)	853, 884, 1196
MmeI	TCCRAC	2 cut(s)	543, 588
Mox20I	TGGCCA	1 cut(s)	1020
MroXI	GAANNNNTTC	1 cut(s)	1073
MscI	TGGCCA	1 cut(s)	1020
MseI	TTAA	2 cut(s)	462, 741
MslI	CAYNNNNRTG	2 cut(s)	854, 1178
Msp20I	TGGCCA	1 cut(s)	1020
MspI	CCGG	7 cut(s)	5, 277, 324, 357, 864, 1128, 1136
MspR9I	CCNGG	4 cut(s)	6, 864, 1128, 1136
MvnI	CGCG	1 cut(s)	989
MwoI	GCNNNNNNNGC	5 cut(s)	256, 407, 788, 1026, 1145
NciI	CCSGG	4 cut(s)	6, 864, 1128, 1136
NdeII	GATC	7 cut(s)	14, 565, 588, 638, 665, 928, 1221
NlaIII	CATG	6 cut(s)	21, 187, 607, 750, 808, 1120
NlaIV	GGNNCC	3 cut(s)	349, 834, 1132
NmuCI	GTSAC	2 cut(s)	97, 856
NspI	RCATGY	2 cut(s)	607, 808
OliI	CACNNNNGTG	2 cut(s)	854, 1178
PdmI	GAANNNNTTC	1 cut(s)	1073
PfoI	TCCNGGA	1 cut(s)	862
PinAI	ACCGGT	1 cut(s)	276
PkrI	GCNGC	7 cut(s)	64, 161, 164, 261, 264, 691, 793
PleI	GAGTC	3 cut(s)	853, 883, 1196
PpsI	GAGTC	3 cut(s)	853, 883, 1196
Ppu21I	YACGTR	1 cut(s)	123
PspFI	CCCAGC	2 cut(s)	584, 1151
PspN4I	GGNNCC	3 cut(s)	349, 834, 1132
PspPI	GGNCC	3 cut(s)	409, 833, 1125
PstI	CTGCAG	1 cut(s)	161
RseI	CAYNNNNRTG	2 cut(s)	854, 1178
SalI	GTCGAC	1 cut(s)	904
SaqAI	TTAA	2 cut(s)	462, 741
SatI	GCNGC	7 cut(s)	63, 160, 163, 260, 263, 690, 792
Sau3AI	GATC	7 cut(s)	14, 565, 588, 638, 665, 928, 1221
Sau96I	GGNCC	3 cut(s)	409, 833, 1125
SchI	GAGTC	3 cut(s)	853, 884, 1196
ScrFI	CCNGG	4 cut(s)	6, 864, 1128, 1136
SduI	GDGCHC	4 cut(s)	302, 372, 403, 1135
SfcI	CTRYAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	854, 1178
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	4 cut(s)	68, 631, 742, 1106
SsiI	CCGC	4 cut(s)	62, 117, 260, 263
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	4 cut(s)	4, 862, 1126, 1134
StyI	CCWWGG	2 cut(s)	48, 1040
TaaI	ACNGT	4 cut(s)	103, 467, 925, 1214
TaiI	ACGT	2 cut(s)	125, 321
TaqI	TCGA	3 cut(s)	800, 825, 905
TasI	AATT	4 cut(s)	68, 631, 742, 1106
TauI	GCSGC	3 cut(s)	65, 262, 265
Tru1I	TTAA	2 cut(s)	462, 741
Tru9I	TTAA	2 cut(s)	462, 741
TscAI	CASTG	5 cut(s)	349, 441, 598, 822, 1180
TseFI	GTSAC	2 cut(s)	97, 856
TseI	GCWGC	4 cut(s)	159, 162, 689, 791
Tsp45I	GTSAC	2 cut(s)	97, 856
TspDTI	ATGAA	6 cut(s)	12, 17, 552, 735, 833, 899
TspGWI	ACGGA	2 cut(s)	133, 631
TspRI	CASTG	5 cut(s)	349, 441, 598, 822, 1180
XapI	RAATTY	2 cut(s)	631, 1106
XceI	RCATGY	2 cut(s)	607, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	905
XmnI	GAANNNNTTC	1 cut(s)	1073
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.