Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010709

Physical Location & Seq

Genomic Coordinates Forward (+)

58689071 .. 58691029

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTTGGGTCTTATACACACCTTCCTGAACCTCTCAGCTCCCCCATTCACCTTCTTCTCCCTCTTGCTTCTCCTACCGCCGCTTTATCTCTTCAAGTTCTTCACCTCTCTCTTGAGCACCATCTTCAGCGAAAATGTCGCCGGCAAGGTCGTCCTCATCACCGGTGCCTCCTCCGGTATCGGCGAGTATGCAAGGAGGGGGGCACGATTGGCCCTAGTTGGCAGGAGAGAAAACACGCTAAGGGAAGTCGTTGATCGAGCAGCTCAGTGTGGTTCTCCAGAGGTTATTATGATTGGGGCTGATGTTTCAAAGGCTGAGGACTGCAAGAGACTTGTTGATGAAACTATCAACCACTTCGAAAGGTTGGACCATCTGGTGAATAATGCTGGGATCACTACTTGTAGCATGTTGGAAGATGTCACCGATATCACAAATTTCAGATCCGTAATGGATACGAACTTCTGGGGATCCGTCTATACCACTCATTTTGCAGCTCCACACCTCAGAAACAACAAAGGTAGAATCGTGGTGCTTTCTTCCGTTAATGCATGGTTGCCTGTGCCAAGAATGAGCATATACAATGCTAGTAAAGCAGCTATGTTGAGCATGTTTGAGACACTGAGGGTTGAATTTGGGCCAGAAGTTCATATAACAATCGTGACTCCTGGATACATAGAGTCTGAGATGAACAAAGGCAAATACTTATTGCCCGAAGGCAAGATGACCGTAGATGAAGAAATGAGGGATGTTCAAGTTAGCGCAATTCCTGTTGAAAGAGTGCAAGAATGCGCGAATGCAATTGTGAACAGTGTTTGTCGTGGACAAAGGTGCTTGACAGAGCCAGCATGGTATAAAGTCATATATATATGGAAGGTGTTCTGCCCTGAGCTACTCGAATGGGGTTACAAATTTTTCTACATGGCTAGGCCTGGGGCTCCTGCTAATGAAGCACCCAGCAAGAAAATCTTGGACTATACTGGCGTGAAGAATGTCGTGTACCCCGAGTCCCTTCACAATCCTGAGATCAAGACAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0016020 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

345

Amino Acids

38.7

Weight (kDa)

6.41

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	49 - 232	2.1e-44	short chain dehydrogenase
KR	PF08659	51 - 207	4.4e-09	KR domain
adh_short_C2	PF13561	62 - 266	2.4e-31	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50600 AT5G50700
fragaria_vesca	FvH4_5g08690 FvH4_5g08690 FvH4_5g08690
malus_domestica	MD14G1153000.v1.1
prunus_persica	Prupe.5G148100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0189581 RchiOBHm_Chr7g0189691
rosa_laevigata	RLG00000004597
rosa_multiflora	Rmu_sc0001924.1_g000017
rosa_roxburghii	Rroxscaffold_3G00265260
rosa_rugosa	Rorug06G0499100
rosa_samantha	Rh7AG104200 Rh7BG106800 Rh7CG108900 Rh7DG106200 Rh7DG107300
rosa_wichuraiana	Rw7G008990 Rw7G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	1 cut(s)	791
AciI	CCGC	2 cut(s)	77, 80
AclWI	GGATC	4 cut(s)	398, 435, 462, 475
AcsI	RAATTY	3 cut(s)	433, 629, 908
AcuI	CTGAAG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	998
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	5 cut(s)	94, 309, 629, 752, 773
AjnI	CCWGG	2 cut(s)	664, 928
AluBI	AGCT	5 cut(s)	38, 263, 494, 596, 889
AluI	AGCT	5 cut(s)	38, 263, 494, 596, 889
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	322, 608
AlwI	GGATC	4 cut(s)	398, 435, 462, 475
Ama87I	CYCGRG	1 cut(s)	1001
AoxI	GGCC	3 cut(s)	210, 635, 926
ApeKI	GCWGC	3 cut(s)	260, 491, 593
ApoI	RAATTY	3 cut(s)	433, 629, 908
AsiGI	ACCGGT	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	875
AspLEI	GCGC	2 cut(s)	761, 791
AspS9I	GGNCC	3 cut(s)	211, 367, 635
AsuHPI	GGTGA	5 cut(s)	40, 94, 151, 388, 412
AsuII	TTCGAA	1 cut(s)	357
AvaI	CYCGRG	1 cut(s)	1001
AvaII	GGWCC	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	937
Bbv12I	GWGCWC	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	272, 503, 605
BccI	CCATC	2 cut(s)	128, 378
BciT130I	CCWGG	2 cut(s)	666, 930
BciVI	GTATCC	2 cut(s)	445, 662
BcoDI	GTCTC	2 cut(s)	322, 608
BfaI	CTAG	3 cut(s)	215, 585, 924
BfuI	GTATCC	2 cut(s)	445, 662
BisI	GCNGC	4 cut(s)	80, 261, 492, 594
BlsI	GCNGC	4 cut(s)	81, 262, 493, 595
Bme1390I	CCNGG	2 cut(s)	666, 930
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	1001
BmgT120I	GGNCC	3 cut(s)	211, 367, 635
BmiI	GGNNCC	3 cut(s)	166, 469, 936
BmrFI	CCNGG	2 cut(s)	666, 930
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	3 cut(s)	239, 315, 885
Bpu14I	TTCGAA	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	929
BsaWI	WCCGGW	2 cut(s)	161, 173
Bse118I	RCCGGY	2 cut(s)	140, 161
Bse1I	ACTGG	1 cut(s)	982
BseBI	CCWGG	2 cut(s)	666, 930
BseDI	CCNNGG	1 cut(s)	929
BseGI	GGATG	1 cut(s)	751
BseMII	CTCAG	8 cut(s)	48, 278, 306, 517, 611, 672, 876, 1011
BseNI	ACTGG	1 cut(s)	982
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	272, 503, 605
BseYI	CCCAGC	2 cut(s)	386, 953
Bsh1236I	CGCG	1 cut(s)	791
BshFI	GGCC	3 cut(s)	212, 637, 928
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	1001
BsiSI	CCGG	3 cut(s)	141, 162, 174
BslFI	GGGAC	1 cut(s)	991
BsmAI	GTCTC	2 cut(s)	322, 608
BsmFI	GGGAC	1 cut(s)	991
BsmI	GAATGC	2 cut(s)	791, 799
BsnI	GGCC	3 cut(s)	212, 637, 928
BsoBI	CYCGRG	1 cut(s)	1001
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	3 cut(s)	119, 205, 937
Bsp143I	GATC	5 cut(s)	253, 390, 440, 467, 1023
BspACI	CCGC	2 cut(s)	77, 80
BspANI	GGCC	3 cut(s)	212, 637, 928
BspCNI	CTCAG	8 cut(s)	47, 277, 307, 516, 612, 673, 877, 1012
BspFNI	CGCG	1 cut(s)	791
BspLI	GGNNCC	3 cut(s)	166, 469, 936
BspPI	GGATC	4 cut(s)	398, 435, 462, 475
BspT104I	TTCGAA	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	164
BsrFI	RCCGGY	2 cut(s)	140, 161
BsrI	ACTGG	1 cut(s)	982
BssAI	RCCGGY	2 cut(s)	140, 161
BssECI	CCNNGG	1 cut(s)	929
BssMI	GATC	5 cut(s)	253, 390, 440, 467, 1023
Bst2UI	CCWGG	2 cut(s)	666, 930
Bst4CI	ACNGT	2 cut(s)	727, 809
Bst6I	CTCTTC	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	142, 843
BstDEI	CTNAG	9 cut(s)	34, 239, 264, 315, 503, 620, 681, 885, 1020
BstF5I	GGATG	1 cut(s)	751
BstFNI	CGCG	1 cut(s)	791
BstHHI	GCGC	2 cut(s)	761, 791
BstKTI	GATC	5 cut(s)	256, 393, 443, 470, 1026
BstMAI	GTCTC	2 cut(s)	322, 608
BstMBI	GATC	5 cut(s)	253, 390, 440, 467, 1023
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 590, 947
BstNI	CCWGG	2 cut(s)	666, 930
BstNSI	RCATGY	2 cut(s)	409, 610
BstSCI	CCNGG	2 cut(s)	664, 928
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	1 cut(s)	791
BstV1I	GCAGC	3 cut(s)	272, 503, 605
BstX2I	RGATCY	2 cut(s)	440, 467
BstYI	RGATCY	2 cut(s)	440, 467
BsuI	GTATCC	2 cut(s)	445, 662
BsuRI	GGCC	3 cut(s)	212, 637, 928
BtsCI	GGATG	1 cut(s)	751
BtsIMutI	CAGTG	3 cut(s)	272, 617, 814
Cac8I	GCNNGC	2 cut(s)	142, 843
CfoI	GCGC	2 cut(s)	761, 791
Cfr10I	RCCGGY	2 cut(s)	140, 161
Cfr13I	GGNCC	3 cut(s)	211, 367, 635
Csp6I	GTAC	1 cut(s)	997
CspAI	ACCGGT	1 cut(s)	161
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	5 cut(s)	406, 549, 607, 846, 919
CviQI	GTAC	1 cut(s)	997
DdeI	CTNAG	9 cut(s)	34, 239, 264, 315, 503, 620, 681, 885, 1020
DpnI	GATC	5 cut(s)	255, 392, 442, 469, 1025
DpnII	GATC	5 cut(s)	253, 390, 440, 467, 1023
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	928
Eco24I	GRGCYC	1 cut(s)	937
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	1001
EcoRII	CCWGG	2 cut(s)	664, 928
EcoRV	GATATC	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	937
FaeI	CATG	5 cut(s)	409, 552, 610, 849, 922
FalI	AAGNNNNNCTT	2 cut(s)	950, 982
FaqI	GGGAC	1 cut(s)	991
FatI	CATG	5 cut(s)	405, 548, 606, 845, 918
Fnu4HI	GCNGC	4 cut(s)	80, 261, 492, 594
FokI	GGATG	1 cut(s)	758
FriOI	GRGCYC	1 cut(s)	937
Fsp4HI	GCNGC	4 cut(s)	80, 261, 492, 594
FspBI	CTAG	3 cut(s)	215, 585, 924
GlaI	GCGC	2 cut(s)	760, 790
GluI	GCNGC	4 cut(s)	80, 261, 492, 594
GsaI	CCCAGC	2 cut(s)	390, 957
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	212, 637, 928
HapII	CCGG	3 cut(s)	141, 162, 174
HhaI	GCGC	2 cut(s)	761, 791
Hin1II	CATG	5 cut(s)	409, 552, 610, 849, 922
Hin6I	GCGC	2 cut(s)	759, 789
HinP1I	GCGC	2 cut(s)	759, 789
HinfI	GANTC	4 cut(s)	522, 661, 677, 1004
HpaII	CCGG	3 cut(s)	141, 162, 174
HphI	GGTGA	5 cut(s)	40, 94, 151, 388, 412
Hpy166II	GTNNAC	3 cut(s)	805, 821, 997
Hpy188I	TCNGA	3 cut(s)	440, 506, 682
Hpy188III	TCNNGA	6 cut(s)	25, 112, 278, 658, 1019, 1027
Hpy8I	GTNNAC	3 cut(s)	805, 821, 997
HpyAV	CCTTC	5 cut(s)	31, 61, 707, 865, 1019
HpyCH4III	ACNGT	2 cut(s)	727, 809
HpyCH4V	TGCA	6 cut(s)	191, 324, 491, 548, 781, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 590, 947
HpyF3I	CTNAG	9 cut(s)	34, 239, 264, 315, 503, 620, 681, 885, 1020
Hsp92II	CATG	5 cut(s)	409, 552, 610, 849, 922
HspAI	GCGC	2 cut(s)	759, 789
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Kzo9I	GATC	5 cut(s)	253, 390, 440, 467, 1023
LmnI	GCTCC	3 cut(s)	43, 499, 940
Lsp1109I	GCAGC	3 cut(s)	272, 503, 605
MaeI	CTAG	3 cut(s)	215, 585, 924
MaeIII	GTNAC	3 cut(s)	418, 658, 902
MalI	GATC	5 cut(s)	255, 392, 442, 469, 1025
MboI	GATC	5 cut(s)	253, 390, 440, 467, 1023
MboII	GAAGA	8 cut(s)	46, 82, 91, 115, 425, 528, 746, 997
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	2 cut(s)	440, 467
MhlI	GDGCHC	3 cut(s)	119, 205, 937
MluCI	AATT	5 cut(s)	433, 629, 762, 798, 908
MlyI	GAGTC	3 cut(s)	655, 686, 1013
MmeI	TCCRAC	2 cut(s)	345, 390
Mph1103I	ATGCAT	1 cut(s)	550
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	875
MseI	TTAA	2 cut(s)	543, 1036
MspI	CCGG	3 cut(s)	141, 162, 174
MspR9I	CCNGG	2 cut(s)	666, 930
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	2 cut(s)	791, 799
MvaI	CCWGG	2 cut(s)	666, 930
MvnI	CGCG	1 cut(s)	791
MwoI	GCNNNNNNNGC	3 cut(s)	209, 590, 947
NaeI	GCCGGC	1 cut(s)	142
NdeII	GATC	5 cut(s)	253, 390, 440, 467, 1023
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	5 cut(s)	409, 552, 610, 849, 922
NlaIV	GGNNCC	3 cut(s)	166, 469, 936
NmuCI	GTSAC	2 cut(s)	418, 658
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	2 cut(s)	409, 610
NspV	TTCGAA	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	928
PcsI	WCGNNNNNNNCGW	1 cut(s)	999
PctI	GAATGC	2 cut(s)	791, 799
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	875
PfeI	GAWTC	1 cut(s)	522
PfoI	TCCNGGA	1 cut(s)	664
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	81, 262, 493, 595
PleI	GAGTC	3 cut(s)	655, 685, 1012
PpsI	GAGTC	3 cut(s)	655, 685, 1012
Psp6I	CCWGG	2 cut(s)	664, 928
PspFI	CCCAGC	2 cut(s)	386, 953
PspGI	CCWGG	2 cut(s)	664, 928
PspN4I	GGNNCC	3 cut(s)	166, 469, 936
PspPI	GGNCC	3 cut(s)	211, 367, 635
PsuI	RGATCY	2 cut(s)	440, 467
RsaI	GTAC	1 cut(s)	998
RsaNI	GTAC	1 cut(s)	997
SaqAI	TTAA	2 cut(s)	543, 1036
SatI	GCNGC	4 cut(s)	80, 261, 492, 594
Sau3AI	GATC	5 cut(s)	253, 390, 440, 467, 1023
Sau96I	GGNCC	3 cut(s)	211, 367, 635
SchI	GAGTC	3 cut(s)	655, 686, 1013
ScrFI	CCNGG	2 cut(s)	666, 930
SduI	GDGCHC	3 cut(s)	119, 205, 937
SfuI	TTCGAA	1 cut(s)	357
SgrAI	CRCCGGYG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	5 cut(s)	433, 629, 762, 798, 908
SseBI	AGGCCT	1 cut(s)	928
SsiI	CCGC	2 cut(s)	77, 80
SspMI	CTAG	3 cut(s)	215, 585, 924
StuI	AGGCCT	1 cut(s)	928
StyD4I	CCNGG	2 cut(s)	664, 928
TaaI	ACNGT	2 cut(s)	727, 809
TaqI	TCGA	3 cut(s)	256, 357, 894
TasI	AATT	5 cut(s)	433, 629, 762, 798, 908
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	522
Tru1I	TTAA	2 cut(s)	543, 1036
Tru9I	TTAA	2 cut(s)	543, 1036
TscAI	CASTG	3 cut(s)	272, 624, 814
TseFI	GTSAC	2 cut(s)	418, 658
TseI	GCWGC	3 cut(s)	260, 491, 593
Tsp45I	GTSAC	2 cut(s)	418, 658
TspDTI	ATGAA	5 cut(s)	354, 635, 701, 747, 960
TspGWI	ACGGA	3 cut(s)	433, 460, 529
TspRI	CASTG	3 cut(s)	272, 624, 814
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	3 cut(s)	433, 629, 908
XceI	RCATGY	2 cut(s)	409, 610
XmnI	GAANNNNTTC	1 cut(s)	875
XspI	CTAG	3 cut(s)	215, 585, 924
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.