Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010709

Physical Location & Seq

Genomic Coordinates Reverse (-)

61474517 .. 61475948

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0499100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGCTGCTTACTGCAAAAAAGGGTAAAGATGAACGTTGGTTCACTGCTTCATTAGATCAAAAGATGTTATGTAGGCGCCATTTGCTATCTGTTATTGGGCTTAAAGAGGAACTCGTAGATTCTCTGATTCTTGAAAGGAAGAAAATGGATCTACTGCAACTACTTGTACATAAGCTTCGTTTCGCAGACAATGCTTACCAAAAGAAACCAATCAAGGCATGCTTGTCAGCTGATCAAGAGATGAGGAAACATAACTTGCATTTCCGGATGGTACATGGAAGCAAGAGTTTGGCCAAGGAAAAGCAGCTTCTGAAAGAGATCAATGGGAGCCAGAAGCAAGATGGGGAAGAGGATAGTTTTGATTCATTTTTTAATCAGTGGGAAGAAGATCTTGCATTTGTTTGTGATAATCTCGCTGGTAAGAAAATAGAGGAATCAAGGAAAACCCTATTGGCTCTTGGGCCAAAACGTGGTCAAGCTCAGAGATTCTTGGTGGGTGTGGAAAAAGATATAGAATTACTGAGGAAGAAATTGCCAGGACCGTTAGAAAAAGTAAAATGGACAAATCATCGGTTACCTAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0016020 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

196

Amino Acids

22.77

Weight (kDa)

9.62

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50600 AT5G50700
fragaria_vesca	FvH4_5g08690 FvH4_5g08690 FvH4_5g08690
malus_domestica	MD14G1153000.v1.1
prunus_persica	Prupe.5G148100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0189581 RchiOBHm_Chr7g0189691
rosa_laevigata	RLG00000004597
rosa_multiflora	Rmu_sc0001924.1_g000017
rosa_roxburghii	Rroxscaffold_3G00265260
rosa_rugosa	Rorug06G0499100
rosa_samantha	Rh7AG104200 Rh7BG106800 Rh7CG108900 Rh7DG106200 Rh7DG107300
rosa_wichuraiana	Rw7G008990 Rw7G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccIII	TCCGGA	1 cut(s)	267
AclI	AACGTT	1 cut(s)	37
AclWI	GGATC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	2 cut(s)	171, 276
AfiI	CCNNNNNNNGG	1 cut(s)	473
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	5 cut(s)	7, 178, 233, 310, 482
AluI	AGCT	5 cut(s)	7, 178, 233, 310, 482
AlwI	GGATC	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	313
Aor13HI	TCCGGA	1 cut(s)	267
AoxI	GGCC	2 cut(s)	294, 464
ApeKI	GCWGC	2 cut(s)	7, 307
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	464, 542
AvaII	GGWCC	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	78
BarI	GAAGNNNNNNTAC	2 cut(s)	162, 194
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	2 cut(s)	265, 338
BciT130I	CCWGG	1 cut(s)	540
BclI	TGATCA	1 cut(s)	235
BfoI	RGCGCY	1 cut(s)	82
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	2 cut(s)	8, 308
BlsI	GCNGC	2 cut(s)	9, 309
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	464, 542
BmiI	GGNNCC	2 cut(s)	80, 332
BmrFI	CCNGG	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
BseAI	TCCGGA	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMII	CTCAG	2 cut(s)	497, 515
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	2 cut(s)	296, 466
BshNI	GGYRCC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	473
BsnI	GGCC	2 cut(s)	296, 466
Bsp13I	TCCGGA	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	5 cut(s)	58, 151, 235, 321, 391
BspANI	GGCC	2 cut(s)	296, 466
BspCNI	CTCAG	2 cut(s)	496, 516
BspEI	TCCGGA	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	80, 332
BspPI	GGATC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	78
BsrGI	TGTACA	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	5 cut(s)	58, 151, 235, 321, 391
BssNI	GRCGYC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	546
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	79
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	483, 524
BstEII	GGTNACC	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	5 cut(s)	61, 154, 238, 324, 394
BstMBI	GATC	5 cut(s)	58, 151, 235, 321, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 194
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	1 cut(s)	225
BstPI	GGTNACC	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	538
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	2 cut(s)	151, 391
BstYI	RGATCY	2 cut(s)	151, 391
BsuRI	GGCC	2 cut(s)	296, 466
BtsCI	GGATG	1 cut(s)	276
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	45, 386
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	313
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	464, 542
Csp6I	GTAC	2 cut(s)	170, 275
CviAII	CATG	2 cut(s)	222, 278
CviQI	GTAC	2 cut(s)	170, 275
DdeI	CTNAG	2 cut(s)	483, 524
DinI	GGCGCC	1 cut(s)	80
DpnI	GATC	5 cut(s)	60, 153, 237, 323, 393
DpnII	GATC	5 cut(s)	58, 151, 235, 321, 391
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	542
Eco91I	GGTNACC	1 cut(s)	576
EcoO65I	GGTNACC	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	297
EgeI	GGCGCC	1 cut(s)	80
EheI	GGCGCC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	225, 281
FaiI	YATR	6 cut(s)	73, 174, 223, 255, 279, 515
FalI	AAGNNNNNCTT	4 cut(s)	209, 241, 378, 410
FatI	CATG	2 cut(s)	221, 277
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	8, 308
FokI	GGATG	1 cut(s)	283
Fsp4HI	GCNGC	2 cut(s)	8, 308
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	2 cut(s)	8, 308
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	296, 466
HapII	CCGG	1 cut(s)	268
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	225, 281
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	5 cut(s)	122, 130, 365, 437, 489
HpaII	CCGG	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	3 cut(s)	129, 315, 486
Hpy188III	TCNNGA	3 cut(s)	134, 239, 268
Hpy8I	GTNNAC	1 cut(s)	45
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4IV	ACGT	2 cut(s)	37, 472
HpyCH4V	TGCA	4 cut(s)	17, 160, 262, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 194
HpyF3I	CTNAG	2 cut(s)	483, 524
HpySE526I	ACGT	2 cut(s)	37, 472
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	225, 281
HspAI	GCGC	1 cut(s)	79
KasI	GGCGCC	1 cut(s)	78
Kpn2I	TCCGGA	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	58, 151, 235, 321, 391
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	5 cut(s)	281, 347, 405, 525, 552
Lsp1109I	GCAGC	1 cut(s)	319
MaeII	ACGT	2 cut(s)	37, 472
MaeIII	GTNAC	1 cut(s)	576
MalI	GATC	5 cut(s)	60, 153, 237, 323, 393
MboI	GATC	5 cut(s)	58, 151, 235, 321, 391
MboII	GAAGA	5 cut(s)	154, 362, 398, 401, 541
MflI	RGATCY	2 cut(s)	151, 391
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	2 cut(s)	518, 533
MluNI	TGGCCA	1 cut(s)	296
Mly113I	GGCGCC	1 cut(s)	79
MnlI	CCTC	5 cut(s)	103, 240, 346, 427, 519
Mox20I	TGGCCA	1 cut(s)	296
MroI	TCCGGA	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	3 cut(s)	105, 375, 589
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	2 cut(s)	85, 194
NarI	GGCGCC	1 cut(s)	79
NdeII	GATC	5 cut(s)	58, 151, 235, 321, 391
NlaIII	CATG	2 cut(s)	225, 281
NlaIV	GGNNCC	2 cut(s)	80, 332
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PfeI	GAWTC	5 cut(s)	122, 130, 365, 437, 489
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	9, 309
PluTI	GGCGCC	1 cut(s)	82
Psp1406I	AACGTT	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	538
PspEI	GGTNACC	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	80, 332
PspPI	GGNCC	2 cut(s)	464, 542
PstNI	CAGNNNCTG	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	151, 391
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	171, 276
RsaNI	GTAC	2 cut(s)	170, 275
SaqAI	TTAA	3 cut(s)	105, 375, 589
SatI	GCNGC	2 cut(s)	8, 308
Sau3AI	GATC	5 cut(s)	58, 151, 235, 321, 391
Sau96I	GGNCC	2 cut(s)	464, 542
ScrFI	CCNGG	1 cut(s)	540
SetI	ASST	8 cut(s)	9, 40, 180, 235, 312, 475, 484, 583
SfoI	GGCGCC	1 cut(s)	80
SinI	GGWCC	1 cut(s)	542
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	2 cut(s)	518, 533
SspDI	GGCGCC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	546
TaiI	ACGT	2 cut(s)	40, 475
TasI	AATT	2 cut(s)	518, 533
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	5 cut(s)	122, 130, 365, 437, 489
Tru1I	TTAA	3 cut(s)	105, 375, 589
Tru9I	TTAA	3 cut(s)	105, 375, 589
TscAI	CASTG	2 cut(s)	52, 386
TseI	GCWGC	2 cut(s)	7, 307
TspDTI	ATGAA	4 cut(s)	17, 42, 48, 357
TspRI	CASTG	2 cut(s)	52, 386
Van91I	CCANNNNNTGG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	542
XceI	RCATGY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.