Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010709

Physical Location & Seq

Genomic Coordinates Reverse (-)

9120980 .. 9122507

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG107300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTTGGGTCTTATACACACCTTCCTGAACCTCTCAGCTCCCCCATTCACCTTCTTCTCCCTCTTGCTTCTTCTACCGCCGCTTTATCTCTTCAAGTTCTTCACCTCTCTCTTGAGCACCATCTTCAGCGAAAGTGTCGCCGGCAAGGTCGTCCTCATCACCGGTGCCTCCTCCGGTATCGGCGAGCACTTGGCTTACGAGTATGCAAGGAGAGGGGCACGATTGGCCCTAGTTGGCAGGAGAGAAAACGCGCTAAGGGAAGTCGTTGATCGAGCAGCTCAGTGTGGCTCTCCAGAGGTCATTATGATTGGGGCTGATGTTTCAAAGGCTGAGGACTGCAAGAGACTTGTTGATGAAACTATCAACCACGTCGGAAGGTTGGACCATCTGGTGAATAATGCTGGGATCACTACTTGTAGCATGTTGGAAGATGTCACCAATATCACAAATTTCAGATCCGTAATGGATACAAACTTCTGGGGATCCGTCTATACCACTCATTTTGCAGCTCCACACCTCAGAAACAACAAAGGTAGAATCGTGGTGCTTTCTTCCGTTAATGCATGGTTTCCTGTGCCAAGAATGAGCATATACAATAAAACCCCTTCTTCTTTTGCTGAAAACTCCAGATTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0016020 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

212

Amino Acids

23.42

Weight (kDa)

8.86

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	49 - 199	4.5e-37	short chain dehydrogenase
KR	PF08659	51 - 198	1.2e-11	KR domain
adh_short_C2	PF13561	55 - 200	2.2e-26	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50600 AT5G50700
fragaria_vesca	FvH4_5g08690 FvH4_5g08690 FvH4_5g08690
malus_domestica	MD14G1153000.v1.1
prunus_persica	Prupe.5G148100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0189581 RchiOBHm_Chr7g0189691
rosa_laevigata	RLG00000004597
rosa_multiflora	Rmu_sc0001924.1_g000017
rosa_roxburghii	Rroxscaffold_3G00265260
rosa_rugosa	Rorug06G0499100
rosa_samantha	Rh7AG104200 Rh7BG106800 Rh7CG108900 Rh7DG106200 Rh7DG107300
rosa_wichuraiana	Rw7G008990 Rw7G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	1 cut(s)	251
AciI	CCGC	2 cut(s)	77, 80
AclWI	GGATC	4 cut(s)	413, 450, 477, 490
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	109
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	94, 324
AjiI	CACGTC	1 cut(s)	370
AluBI	AGCT	3 cut(s)	38, 278, 509
AluI	AGCT	3 cut(s)	38, 278, 509
Alw21I	GWGCWC	2 cut(s)	119, 189
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	4 cut(s)	413, 450, 477, 490
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	275, 506
ApoI	RAATTY	1 cut(s)	448
AsiGI	ACCGGT	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	226, 382
AsuHPI	GGTGA	5 cut(s)	40, 94, 151, 403, 427
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	164
Bbv12I	GWGCWC	2 cut(s)	119, 189
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	287, 518
BccI	CCATC	2 cut(s)	128, 393
BciVI	GTATCC	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	3 cut(s)	80, 276, 507
BlsI	GCNGC	3 cut(s)	81, 277, 508
Bme18I	GGWCC	1 cut(s)	382
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	226, 382
BmiI	GGNNCC	2 cut(s)	166, 484
BpmI	CTGGAG	2 cut(s)	276, 610
Bpu10I	CCTNAGC	2 cut(s)	254, 330
BpuEI	CTTGAG	1 cut(s)	133
BsaWI	WCCGGW	2 cut(s)	161, 173
Bse118I	RCCGGY	2 cut(s)	140, 161
BseMII	CTCAG	4 cut(s)	48, 293, 321, 532
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	287, 518
BseYI	CCCAGC	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	119, 189
BsiSI	CCGG	3 cut(s)	141, 162, 174
BsmAI	GTCTC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	3 cut(s)	119, 189, 220
Bsp143I	GATC	4 cut(s)	268, 405, 455, 482
BspACI	CCGC	2 cut(s)	77, 80
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	4 cut(s)	47, 292, 322, 531
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	166, 484
BspPI	GGATC	4 cut(s)	413, 450, 477, 490
BspT107I	GGYRCC	1 cut(s)	164
BsrFI	RCCGGY	2 cut(s)	140, 161
BssAI	RCCGGY	2 cut(s)	140, 161
BssMI	GATC	4 cut(s)	268, 405, 455, 482
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	142, 185
BstDEI	CTNAG	5 cut(s)	34, 254, 279, 330, 518
BstFNI	CGCG	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	4 cut(s)	271, 408, 458, 485
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	4 cut(s)	268, 405, 455, 482
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	424
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	287, 518
BstX2I	RGATCY	2 cut(s)	455, 482
BstYI	RGATCY	2 cut(s)	455, 482
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	227
BtrI	CACGTC	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	2 cut(s)	142, 185
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	2 cut(s)	140, 161
Cfr13I	GGNCC	2 cut(s)	226, 382
CspAI	ACCGGT	1 cut(s)	161
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	2 cut(s)	421, 564
CviJI	RGCY	8 cut(s)	38, 194, 227, 278, 288, 314, 329, 509
CviKI_1	RGCY	8 cut(s)	38, 194, 227, 278, 288, 314, 329, 509
DdeI	CTNAG	5 cut(s)	34, 254, 279, 330, 518
DpnI	GATC	4 cut(s)	270, 407, 457, 484
DpnII	GATC	4 cut(s)	268, 405, 455, 482
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	565
FaeI	CATG	2 cut(s)	424, 567
FaiI	YATR	9 cut(s)	14, 204, 305, 422, 492, 565, 590, 592, 637
FatI	CATG	2 cut(s)	420, 563
Fnu4HI	GCNGC	3 cut(s)	80, 276, 507
Fsp4HI	GCNGC	3 cut(s)	80, 276, 507
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	3 cut(s)	80, 276, 507
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	2 cut(s)	276, 610
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	3 cut(s)	141, 162, 174
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	424, 567
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	1 cut(s)	537
HpaII	CCGG	3 cut(s)	141, 162, 174
HphI	GGTGA	5 cut(s)	40, 94, 151, 403, 427
Hpy188I	TCNGA	3 cut(s)	374, 455, 521
Hpy188III	TCNNGA	4 cut(s)	25, 112, 293, 627
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	4 cut(s)	31, 61, 369, 615
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	4 cut(s)	206, 339, 506, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	5 cut(s)	34, 254, 279, 330, 518
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	424, 567
HspAI	GCGC	1 cut(s)	251
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	268, 405, 455, 482
LmnI	GCTCC	2 cut(s)	43, 514
Lsp1109I	GCAGC	2 cut(s)	287, 518
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	4 cut(s)	270, 407, 457, 484
MboI	GATC	4 cut(s)	268, 405, 455, 482
MboII	GAAGA	8 cut(s)	46, 62, 82, 91, 115, 440, 543, 600
MflI	RGATCY	2 cut(s)	455, 482
MhlI	GDGCHC	3 cut(s)	119, 189, 220
MluCI	AATT	1 cut(s)	448
MmeI	TCCRAC	3 cut(s)	352, 360, 405
Mph1103I	ATGCAT	1 cut(s)	565
MroNI	GCCGGC	1 cut(s)	140
MseI	TTAA	1 cut(s)	558
MspI	CCGG	3 cut(s)	141, 162, 174
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	224
NaeI	GCCGGC	1 cut(s)	142
NdeII	GATC	4 cut(s)	268, 405, 455, 482
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	2 cut(s)	424, 567
NlaIV	GGNNCC	2 cut(s)	166, 484
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	1 cut(s)	424
PdiI	GCCGGC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	537
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	81, 277, 508
PspFI	CCCAGC	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	166, 484
PspPI	GGNCC	2 cut(s)	226, 382
PsuI	RGATCY	2 cut(s)	455, 482
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	3 cut(s)	80, 276, 507
Sau3AI	GATC	4 cut(s)	268, 405, 455, 482
Sau96I	GGNCC	2 cut(s)	226, 382
SduI	GDGCHC	3 cut(s)	119, 189, 220
SgrAI	CRCCGGYG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	1 cut(s)	448
SsiI	CCGC	2 cut(s)	77, 80
SspMI	CTAG	1 cut(s)	230
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	1 cut(s)	271
TasI	AATT	1 cut(s)	448
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	275, 506
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	1 cut(s)	369
TspGWI	ACGGA	3 cut(s)	448, 475, 544
TspRI	CASTG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	1 cut(s)	230
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.