RLG00000004597

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010709
Physical Location & Seq
Forward (+)
60611999 .. 60613909
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004597

Sequence Viewer

Length: 1053 bp
ATGTTGGGTCTTATACACACCTTCCTGAACCTCTCAGCTCCCCCATTCACCTTCTTCTCCCTCTTGCTTCTCCTACCGCCGCTTTATCTCTTCAAGTTCTTCACCTCTCTCTTGAGCACCATCTTCAGCGAAAGTGTCGCCGGCAAGGTCGTCCTCATCACCGGTGCCTCCTCCGGTATCGGCGAGCACTTGGCTTATGAGTATGCAAGGAGAGGGGCACGATTGGCCCTAGTTGGCAGGAGAGAAAACGCGCTAAGGGAAGTCGTTGATCGAGCAGCTCAGTGTGGCTCTCCAGAGGTTATTATGGTTGGGGCTGATGTTTCAAAGGCTGAGGACTGCAAGAGACTTCTTGATGAAACTATCAACCACTTCGGAAGGTTGGACCATCTGGTGAATAATGCTGGGATAACTACTTGTAGCATGTTGGAAGATGTCACCGATATCACAAATTTCAGATCCATAATGGAAACAAACTTCTGGGGATCCGTCTATACCACTCATTTTGCAGCTCCACACCTCAGAAACAACAAAGGTAGAATCGTGGTGCTTTCTTCCGTTAATGCATGGTTGCCTGTGCCAAGAATGAGCATATATAATGCAAGTAAAGCAGCTATGGTGAGCATGTTTGAGACACTGAGGGTTGAATTTGGGCCAGAAGTTCATATAACAATCGTGACTCCCGGATACATAGAGTCTGAGATGAACAAAGGCAAATACCTATCACCCGAAGGCAAGATGACCATAGATCAAGAAATGAGGGATGTTCAAGTTAACGCAATTCCTGTTGAAAGAGTGCAAGAATGCGCGAATGCAATTGTGAACAGTGTTTGTCGTGGACAAAGGTGCTTGACAGAGCCAGAATGGTATAAAGTCATATATATGTGGAAGGTGTTCTGCCCTGAGCTACTCGAATGGGGTTACAAATTTTTCTACATGGCTAGGCCTGGGGCTCCTGCTAATGAAGCACCTAGCAAAGATATCTTGGACTACACTGGCGTGAAGAATGTCCTGTACCCTGAGTCCCTCCACAATCCTGAGATCAAGACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0016020 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

351

Amino Acids

39.29

Weight (kDa)

6.1

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 49 - 237 2.8e-49 short chain dehydrogenase
KR PF08659 51 - 213 1.4e-12 KR domain
adh_short_C2 PF13561 55 - 271 9.1e-36 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010709)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50600 AT5G50700
fragaria_vesca FvH4_5g08690 FvH4_5g08690 FvH4_5g08690
malus_domestica MD14G1153000.v1.1
prunus_persica Prupe.5G148100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0189581 RchiOBHm_Chr7g0189691
rosa_laevigata RLG00000004597
rosa_multiflora Rmu_sc0001924.1_g000017
rosa_roxburghii Rroxscaffold_3G00265260
rosa_rugosa Rorug06G0499100
rosa_samantha Rh7AG104200 Rh7BG106800 Rh7CG108900 Rh7DG106200 Rh7DG107300
rosa_wichuraiana Rw7G008990 Rw7G009020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 2 cut(s) 251, 806
AciI CCGC 2 cut(s) 77, 80
AclWI GGATC 3 cut(s) 450, 477, 490
AcsI RAATTY 3 cut(s) 448, 644, 923
AcuI CTGAAG 1 cut(s) 109
AfaI GTAC 1 cut(s) 1013
AgeI ACCGGT 1 cut(s) 161
AgsI TTSAA 5 cut(s) 94, 324, 644, 767, 788
AjnI CCWGG 1 cut(s) 943
AleI CACNNNNGTG 1 cut(s) 995
AluBI AGCT 5 cut(s) 38, 278, 509, 611, 904
AluI AGCT 5 cut(s) 38, 278, 509, 611, 904
Alw21I GWGCWC 2 cut(s) 119, 189
Alw26I GTCTC 2 cut(s) 337, 623
AlwI GGATC 3 cut(s) 450, 477, 490
AoxI GGCC 3 cut(s) 225, 650, 941
ApeKI GCWGC 3 cut(s) 275, 506, 608
ApoI RAATTY 3 cut(s) 448, 644, 923
AsiGI ACCGGT 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 890
AspLEI GCGC 2 cut(s) 253, 806
AspS9I GGNCC 3 cut(s) 226, 382, 650
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 7 cut(s) 40, 94, 151, 403, 427, 628, 714
AvaII GGWCC 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 220
BamHI GGATCC 1 cut(s) 482
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 952
Bbv12I GWGCWC 2 cut(s) 119, 189
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 3 cut(s) 287, 518, 620
BccI CCATC 2 cut(s) 128, 393
BciT130I CCWGG 1 cut(s) 945
BciVI GTATCC 1 cut(s) 677
BcnI CCSGG 1 cut(s) 681
BcoDI GTCTC 2 cut(s) 337, 623
BfaI CTAG 3 cut(s) 230, 939, 969
BfuI GTATCC 1 cut(s) 677
BisI GCNGC 4 cut(s) 80, 276, 507, 609
BlsI GCNGC 4 cut(s) 81, 277, 508, 610
Bme1390I CCNGG 2 cut(s) 681, 945
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 3 cut(s) 226, 382, 650
BmiI GGNNCC 3 cut(s) 166, 484, 951
BmrFI CCNGG 2 cut(s) 681, 945
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 3 cut(s) 254, 330, 900
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 681
BsaJI CCNNGG 1 cut(s) 944
BsaWI WCCGGW 2 cut(s) 161, 173
Bse118I RCCGGY 2 cut(s) 140, 161
Bse1I ACTGG 1 cut(s) 997
BseBI CCWGG 1 cut(s) 945
BseDI CCNNGG 1 cut(s) 944
BseGI GGATG 1 cut(s) 766
BseMII CTCAG 9 cut(s) 48, 293, 321, 532, 626, 687, 891, 1008, 1026
BseNI ACTGG 1 cut(s) 997
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 3 cut(s) 287, 518, 620
BseYI CCCAGC 1 cut(s) 401
Bsh1236I CGCG 2 cut(s) 251, 806
BshFI GGCC 3 cut(s) 227, 652, 943
BshNI GGYRCC 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 161
BsiHKAI GWGCWC 2 cut(s) 119, 189
BsiSI CCGG 4 cut(s) 141, 162, 174, 681
BslFI GGGAC 1 cut(s) 1006
BsmAI GTCTC 2 cut(s) 337, 623
BsmFI GGGAC 1 cut(s) 1006
BsmI GAATGC 2 cut(s) 806, 814
BsnI GGCC 3 cut(s) 227, 652, 943
Bsp1286I GDGCHC 4 cut(s) 119, 189, 220, 952
Bsp143I GATC 5 cut(s) 268, 455, 482, 745, 1038
BspACI CCGC 2 cut(s) 77, 80
BspANI GGCC 3 cut(s) 227, 652, 943
BspCNI CTCAG 9 cut(s) 47, 292, 322, 531, 627, 688, 892, 1009, 1027
BspFNI CGCG 2 cut(s) 251, 806
BspLI GGNNCC 3 cut(s) 166, 484, 951
BspPI GGATC 3 cut(s) 450, 477, 490
BspT107I GGYRCC 1 cut(s) 164
BsrFI RCCGGY 2 cut(s) 140, 161
BsrI ACTGG 1 cut(s) 997
BssAI RCCGGY 2 cut(s) 140, 161
BssECI CCNNGG 1 cut(s) 944
BssMI GATC 5 cut(s) 268, 455, 482, 745, 1038
Bst2UI CCWGG 1 cut(s) 945
Bst4CI ACNGT 1 cut(s) 824
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 142, 185
BstF5I GGATG 1 cut(s) 766
BstFNI CGCG 2 cut(s) 251, 806
BstHHI GCGC 2 cut(s) 253, 806
BstKTI GATC 5 cut(s) 271, 458, 485, 748, 1041
BstMAI GTCTC 2 cut(s) 337, 623
BstMBI GATC 5 cut(s) 268, 455, 482, 745, 1038
BstMWI GCNNNNNNNGC 3 cut(s) 224, 605, 962
BstNI CCWGG 1 cut(s) 945
BstNSI RCATGY 2 cut(s) 424, 625
BstSCI CCNGG 2 cut(s) 679, 943
BstSLI GKGCMC 1 cut(s) 220
BstUI CGCG 2 cut(s) 251, 806
BstV1I GCAGC 3 cut(s) 287, 518, 620
BstX2I RGATCY 2 cut(s) 455, 482
BstYI RGATCY 2 cut(s) 455, 482
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 3 cut(s) 227, 652, 943
BtsCI GGATG 1 cut(s) 766
BtsIMutI CAGTG 4 cut(s) 287, 632, 829, 990
Cac8I GCNNGC 2 cut(s) 142, 185
CfoI GCGC 2 cut(s) 253, 806
Cfr10I RCCGGY 2 cut(s) 140, 161
Cfr13I GGNCC 3 cut(s) 226, 382, 650
Csp6I GTAC 1 cut(s) 1012
CspAI ACCGGT 1 cut(s) 161
CspCI CAANNNNNGTGG 2 cut(s) 484, 519
CviAII CATG 4 cut(s) 421, 564, 622, 934
CviQI GTAC 1 cut(s) 1012
DpnI GATC 5 cut(s) 270, 457, 484, 747, 1040
DpnII GATC 5 cut(s) 268, 455, 482, 745, 1038
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 1 cut(s) 952
Eco32I GATATC 2 cut(s) 442, 979
Eco47I GGWCC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 943
EcoRV GATATC 2 cut(s) 442, 979
EcoT22I ATGCAT 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 952
FaeI CATG 4 cut(s) 424, 567, 625, 937
FaqI GGGAC 1 cut(s) 1006
FatI CATG 4 cut(s) 420, 563, 621, 933
Fnu4HI GCNGC 4 cut(s) 80, 276, 507, 609
FokI GGATG 1 cut(s) 773
FriOI GRGCYC 1 cut(s) 952
Fsp4HI GCNGC 4 cut(s) 80, 276, 507, 609
FspBI CTAG 3 cut(s) 230, 939, 969
GlaI GCGC 2 cut(s) 252, 805
GluI GCNGC 4 cut(s) 80, 276, 507, 609
GsaI CCCAGC 1 cut(s) 405
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 3 cut(s) 227, 652, 943
HapII CCGG 4 cut(s) 141, 162, 174, 681
HhaI GCGC 2 cut(s) 253, 806
Hin1II CATG 4 cut(s) 424, 567, 625, 937
Hin6I GCGC 2 cut(s) 251, 804
HinP1I GCGC 2 cut(s) 251, 804
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 4 cut(s) 537, 676, 692, 1019
HpaI GTTAAC 1 cut(s) 772
HpaII CCGG 4 cut(s) 141, 162, 174, 681
HphI GGTGA 7 cut(s) 40, 94, 151, 403, 427, 628, 714
Hpy166II GTNNAC 3 cut(s) 772, 820, 836
Hpy188I TCNGA 4 cut(s) 374, 455, 521, 697
Hpy188III TCNNGA 8 cut(s) 25, 112, 293, 350, 673, 749, 1034, 1042
Hpy8I GTNNAC 3 cut(s) 772, 820, 836
HpyAV CCTTC 5 cut(s) 31, 61, 369, 722, 880
HpyCH4III ACNGT 1 cut(s) 824
HpyCH4V TGCA 7 cut(s) 206, 339, 506, 563, 599, 796, 812
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 605, 962
Hsp92II CATG 4 cut(s) 424, 567, 625, 937
HspAI GCGC 2 cut(s) 251, 804
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
KspAI GTTAAC 1 cut(s) 772
Kzo9I GATC 5 cut(s) 268, 455, 482, 745, 1038
LmnI GCTCC 3 cut(s) 43, 514, 955
Lsp1109I GCAGC 3 cut(s) 287, 518, 620
MaeI CTAG 3 cut(s) 230, 939, 969
MaeIII GTNAC 3 cut(s) 433, 673, 917
MalI GATC 5 cut(s) 270, 457, 484, 747, 1040
MboI GATC 5 cut(s) 268, 455, 482, 745, 1038
MboII GAAGA 7 cut(s) 46, 82, 91, 115, 440, 543, 1012
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 2 cut(s) 455, 482
MhlI GDGCHC 4 cut(s) 119, 189, 220, 952
MluCI AATT 5 cut(s) 448, 644, 777, 813, 923
MlyI GAGTC 3 cut(s) 670, 701, 1028
MmeI TCCRAC 2 cut(s) 360, 405
Mph1103I ATGCAT 1 cut(s) 565
MroNI GCCGGC 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 890
MseI TTAA 2 cut(s) 558, 771
MslI CAYNNNNRTG 2 cut(s) 878, 995
MspI CCGG 4 cut(s) 141, 162, 174, 681
MspR9I CCNGG 2 cut(s) 681, 945
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 2 cut(s) 806, 814
MvaI CCWGG 1 cut(s) 945
MvnI CGCG 2 cut(s) 251, 806
MwoI GCNNNNNNNGC 3 cut(s) 224, 605, 962
NaeI GCCGGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 681
NdeII GATC 5 cut(s) 268, 455, 482, 745, 1038
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 4 cut(s) 424, 567, 625, 937
NlaIV GGNNCC 3 cut(s) 166, 484, 951
NmuCI GTSAC 2 cut(s) 433, 673
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 2 cut(s) 424, 625
OliI CACNNNNGTG 1 cut(s) 995
PceI AGGCCT 1 cut(s) 943
PctI GAATGC 2 cut(s) 806, 814
PdiI GCCGGC 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 890
PfeI GAWTC 1 cut(s) 537
PfoI TCCNGGA 1 cut(s) 679
PinAI ACCGGT 1 cut(s) 161
PkrI GCNGC 4 cut(s) 81, 277, 508, 610
PleI GAGTC 3 cut(s) 670, 700, 1027
PpsI GAGTC 3 cut(s) 670, 700, 1027
Psp6I CCWGG 1 cut(s) 943
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 1 cut(s) 943
PspN4I GGNNCC 3 cut(s) 166, 484, 951
PspPI GGNCC 3 cut(s) 226, 382, 650
PsuI RGATCY 2 cut(s) 455, 482
RsaI GTAC 1 cut(s) 1013
RsaNI GTAC 1 cut(s) 1012
RseI CAYNNNNRTG 2 cut(s) 878, 995
SaqAI TTAA 2 cut(s) 558, 771
SatI GCNGC 4 cut(s) 80, 276, 507, 609
Sau3AI GATC 5 cut(s) 268, 455, 482, 745, 1038
Sau96I GGNCC 3 cut(s) 226, 382, 650
SchI GAGTC 3 cut(s) 670, 701, 1028
ScrFI CCNGG 2 cut(s) 681, 945
SduI GDGCHC 4 cut(s) 119, 189, 220, 952
SgrAI CRCCGGYG 1 cut(s) 161
SinI GGWCC 1 cut(s) 382
SmiMI CAYNNNNRTG 2 cut(s) 878, 995
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 5 cut(s) 448, 644, 777, 813, 923
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 2 cut(s) 77, 80
SspMI CTAG 3 cut(s) 230, 939, 969
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 2 cut(s) 679, 943
TaaI ACNGT 1 cut(s) 824
TaqI TCGA 2 cut(s) 271, 909
TasI AATT 5 cut(s) 448, 644, 777, 813, 923
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 1 cut(s) 537
Tru1I TTAA 2 cut(s) 558, 771
Tru9I TTAA 2 cut(s) 558, 771
TscAI CASTG 4 cut(s) 287, 639, 829, 997
TseFI GTSAC 2 cut(s) 433, 673
TseI GCWGC 3 cut(s) 275, 506, 608
Tsp45I GTSAC 2 cut(s) 433, 673
TspDTI ATGAA 4 cut(s) 369, 650, 716, 975
TspGWI ACGGA 2 cut(s) 475, 544
TspRI CASTG 4 cut(s) 287, 639, 829, 997
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 3 cut(s) 448, 644, 923
XceI RCATGY 2 cut(s) 424, 625
XmnI GAANNNNTTC 1 cut(s) 890
XspI CTAG 3 cut(s) 230, 939, 969
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.