RchiOBHm_Chr7g0189581

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
8895299 .. 8895757
459 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16932

Sequence Viewer

Length: 354 bp
ATGAACAAAGGCAAATACTTATCGCCCGAAGGCAAGATGACCGTAGATCAAGAAATGAGGGATGTTCAAGTTAGCGCAATTCCTGTTGAAAGAGTGCAAGAATGCGCGAATGCAATTGTGAACAGTGTGTGTCGTGGACAAAGGTGCTTGACAGAGCCAGCATGGTATAAAGTCATATATATGTGGAAGGTGTTCTGCCCTGAGCTACTCGAAAGGGGTTACAAATTTTTCTACATGGCTAGGCCTGGGGCTCCTGCTAATGAAGCACCTAGCAAAGATATCTTGGACTACACTGGCGTGAAGAATGTCCTGTACCCGGAGTCCCTCCACAATCCTGAGATCAAGACAGATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.41

Weight (kDa)

6.58

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010709)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 107
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 2 cut(s) 68, 89
AjnI CCWGG 1 cut(s) 244
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
AoxI GGCC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 2 cut(s) 77, 107
AsuC2I CCSGG 1 cut(s) 317
BanII GRGCYC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 317
BfaI CTAG 2 cut(s) 240, 270
Bme1390I CCNGG 2 cut(s) 246, 317
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 2 cut(s) 246, 317
Bpu10I CCTNAGC 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 192, 327
BseNI ACTGG 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 307
BsmI GAATGC 2 cut(s) 107, 115
BsnI GGCC 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 46, 339
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 2 cut(s) 193, 328
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 252
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 2 cut(s) 46, 339
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 43, 125
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 201, 336
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 2 cut(s) 77, 107
BstKTI GATC 2 cut(s) 49, 342
BstMBI GATC 2 cut(s) 46, 339
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 244, 315
BstUI CGCG 1 cut(s) 107
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 130, 291
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 2 cut(s) 77, 107
Csp6I GTAC 1 cut(s) 313
CviAII CATG 2 cut(s) 162, 235
CviJI RGCY 5 cut(s) 157, 205, 239, 244, 251
CviKI_1 RGCY 5 cut(s) 157, 205, 239, 244, 251
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 2 cut(s) 201, 336
DpnI GATC 2 cut(s) 48, 341
DpnII GATC 2 cut(s) 46, 339
Eco147I AGGCCT 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 253
Eco32I GATATC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 244
EcoRV GATATC 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 253
FaeI CATG 2 cut(s) 165, 238
FaiI YATR 7 cut(s) 163, 168, 176, 178, 180, 182, 236
FaqI GGGAC 1 cut(s) 307
FatI CATG 2 cut(s) 161, 234
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 253
FspBI CTAG 2 cut(s) 240, 270
GlaI GCGC 2 cut(s) 76, 106
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 317
HhaI GCGC 2 cut(s) 77, 107
Hin1II CATG 2 cut(s) 165, 238
Hin6I GCGC 2 cut(s) 75, 105
HinP1I GCGC 2 cut(s) 75, 105
HinfI GANTC 1 cut(s) 320
HpaII CCGG 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 121, 137
Hpy188III TCNNGA 3 cut(s) 50, 335, 343
Hpy8I GTNNAC 2 cut(s) 121, 137
HpyAV CCTTC 2 cut(s) 23, 181
HpyCH4III ACNGT 2 cut(s) 43, 125
HpyCH4V TGCA 2 cut(s) 97, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 2 cut(s) 201, 336
Hsp92II CATG 2 cut(s) 165, 238
HspAI GCGC 2 cut(s) 75, 105
Kzo9I GATC 2 cut(s) 46, 339
LmnI GCTCC 1 cut(s) 256
MaeI CTAG 2 cut(s) 240, 270
MaeIII GTNAC 1 cut(s) 218
MalI GATC 2 cut(s) 48, 341
MboI GATC 2 cut(s) 46, 339
MboII GAAGA 1 cut(s) 313
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 3 cut(s) 78, 114, 224
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 2 cut(s) 51, 335
MroXI GAANNNNTTC 1 cut(s) 191
MslI CAYNNNNRTG 2 cut(s) 179, 296
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 2 cut(s) 246, 317
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 2 cut(s) 107, 115
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 317
NdeII GATC 2 cut(s) 46, 339
NlaIII CATG 2 cut(s) 165, 238
NlaIV GGNNCC 1 cut(s) 252
OliI CACNNNNGTG 1 cut(s) 296
PceI AGGCCT 1 cut(s) 244
PctI GAATGC 2 cut(s) 107, 115
PdmI GAANNNNTTC 1 cut(s) 191
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 252
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 2 cut(s) 179, 296
Sau3AI GATC 2 cut(s) 46, 339
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 246, 317
SduI GDGCHC 1 cut(s) 253
SetI ASST 4 cut(s) 146, 192, 207, 271
SmiMI CAYNNNNRTG 2 cut(s) 179, 296
Sse9I AATT 3 cut(s) 78, 114, 224
SseBI AGGCCT 1 cut(s) 244
SspMI CTAG 2 cut(s) 240, 270
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 244, 315
TaaI ACNGT 2 cut(s) 43, 125
TaqI TCGA 1 cut(s) 210
TasI AATT 3 cut(s) 78, 114, 224
TscAI CASTG 2 cut(s) 130, 298
TspDTI ATGAA 2 cut(s) 17, 276
TspRI CASTG 2 cut(s) 130, 298
XapI RAATTY 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 2 cut(s) 240, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.