Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010709

Physical Location & Seq

Genomic Coordinates Reverse (-)

8399773 .. 8400182

Gene Structure 410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G008990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGACCGTAGATCAAGAAATGAGGGATGTTCAAGTTAGCGCAATTCCTGTTGAAAGAGTGCAAGAATGCGCGAATGCAATTGTCAACAGTGTGTGTCGTGGACAAAGGTGCTTGACAGAGCCAGCATGGTATAAAGTCATATATATGTGGAAGGTGTTCTGCCCTGAGCTACTCGAAAGGGGTTACAAATTTTTCTACATGGCTAGGCCTGGGGCTCCTGCTAATGAAGCACCTAGCAAAGATATCTTGGACTACACTGGCGTGAAGAATGTCCTGTACCCGGAGTCCCTCCACAATCCTGAGATCAAGACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0016020 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

105

Amino Acids

12.07

Weight (kDa)

5.4

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50600 AT5G50700
fragaria_vesca	FvH4_5g08690 FvH4_5g08690 FvH4_5g08690
malus_domestica	MD14G1153000.v1.1
prunus_persica	Prupe.5G148100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0189581 RchiOBHm_Chr7g0189691
rosa_laevigata	RLG00000004597
rosa_multiflora	Rmu_sc0001924.1_g000017
rosa_roxburghii	Rroxscaffold_3G00265260
rosa_rugosa	Rorug06G0499100
rosa_samantha	Rh7AG104200 Rh7BG106800 Rh7CG108900 Rh7DG106200 Rh7DG107300
rosa_wichuraiana	Rw7G008990 Rw7G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	32, 53
AjnI	CCWGG	1 cut(s)	208
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
AoxI	GGCC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	41, 71
AsuC2I	CCSGG	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	281
BfaI	CTAG	2 cut(s)	204, 234
Bme1390I	CCNGG	2 cut(s)	210, 281
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	2 cut(s)	210, 281
Bpu10I	CCTNAGC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	2 cut(s)	156, 291
BseNI	ACTGG	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	2 cut(s)	71, 79
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	10, 303
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	2 cut(s)	157, 292
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	10, 303
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	7, 89
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	165, 300
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	41, 71
BstKTI	GATC	2 cut(s)	13, 306
BstMBI	GATC	2 cut(s)	10, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	2 cut(s)	208, 279
BstUI	CGCG	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	94, 255
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	2 cut(s)	41, 71
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	2 cut(s)	126, 199
CviJI	RGCY	5 cut(s)	121, 169, 203, 208, 215
CviKI_1	RGCY	5 cut(s)	121, 169, 203, 208, 215
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	165, 300
DpnI	GATC	2 cut(s)	12, 305
DpnII	GATC	2 cut(s)	10, 303
Eco147I	AGGCCT	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	2 cut(s)	129, 202
FaiI	YATR	7 cut(s)	127, 132, 140, 142, 144, 146, 200
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	2 cut(s)	125, 198
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	217
FspBI	CTAG	2 cut(s)	204, 234
GlaI	GCGC	2 cut(s)	40, 70
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	2 cut(s)	41, 71
Hin1II	CATG	2 cut(s)	129, 202
Hin6I	GCGC	2 cut(s)	39, 69
HinP1I	GCGC	2 cut(s)	39, 69
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	85, 101
Hpy188III	TCNNGA	3 cut(s)	14, 299, 307
Hpy8I	GTNNAC	2 cut(s)	85, 101
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	7, 89
HpyCH4V	TGCA	2 cut(s)	61, 77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	165, 300
Hsp92II	CATG	2 cut(s)	129, 202
HspAI	GCGC	2 cut(s)	39, 69
Kzo9I	GATC	2 cut(s)	10, 303
LmnI	GCTCC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	204, 234
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	2 cut(s)	12, 305
MboI	GATC	2 cut(s)	10, 303
MboII	GAAGA	1 cut(s)	277
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	3 cut(s)	42, 78, 188
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	2 cut(s)	15, 299
MroXI	GAANNNNTTC	1 cut(s)	155
MslI	CAYNNNNRTG	2 cut(s)	143, 260
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	210, 281
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	2 cut(s)	71, 79
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	10, 303
NlaIII	CATG	2 cut(s)	129, 202
NlaIV	GGNNCC	1 cut(s)	216
OliI	CACNNNNGTG	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	208
PctI	GAATGC	2 cut(s)	71, 79
PdmI	GAANNNNTTC	1 cut(s)	155
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	143, 260
Sau3AI	GATC	2 cut(s)	10, 303
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	210, 281
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	4 cut(s)	110, 156, 171, 235
SmiMI	CAYNNNNRTG	2 cut(s)	143, 260
Sse9I	AATT	3 cut(s)	42, 78, 188
SseBI	AGGCCT	1 cut(s)	208
SspMI	CTAG	2 cut(s)	204, 234
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	2 cut(s)	208, 279
TaaI	ACNGT	2 cut(s)	7, 89
TaqI	TCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	42, 78, 188
TscAI	CASTG	2 cut(s)	94, 262
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	94, 262
XapI	RAATTY	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	204, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.