RchiOBHm_Chr7g0189691

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
8944502 .. 8945387
886 bp
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UTR
Exon/CDS
Intron
PRQ16942

Sequence Viewer

Length: 396 bp
ATGTTGGGTCTTATACACACCTTCCTGAACCTCTCAGCTCCCCCATTCACCTTCTTCTCCCTCTTGCTTCTTCTACCGCCGCTTTATCTCTTCAAGTTCTTCACCTCTCTCTTGAGCACCATCTTCAGCGAAAGTGTCGCCGGCAAGGTCGTCCTCATCACCGGTGCCTCCTCCGGTATCGGCGAGCACTTGGCTTACGAGTATGCAAGGAGAGGGGCACGATTGGCCCTAGTTGGCAGGAGAGAAAACGCGCTAAGGGAAGTCGTTGATCGAGCAGCTCAGTGTGGCTCTCCAGAGGTCATTATGATTGGGGCTGATGTTTCAAAGGCTGAGGACTGCAAGAGACTTGTTGATGAAACTATCAACCACGTCGGAAGTGGACCATCTGGTGAATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.13

Weight (kDa)

6.29

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 49 - 125 1.2e-15 short chain dehydrogenase
KR PF08659 51 - 120 9.9e-07 KR domain
adh_short_C2 PF13561 55 - 125 1.6e-09 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010709)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 1 cut(s) 251
AciI CCGC 2 cut(s) 77, 80
AcuI CTGAAG 1 cut(s) 109
AgeI ACCGGT 1 cut(s) 161
AgsI TTSAA 2 cut(s) 94, 324
AjiI CACGTC 1 cut(s) 370
AluBI AGCT 2 cut(s) 38, 278
AluI AGCT 2 cut(s) 38, 278
Alw21I GWGCWC 2 cut(s) 119, 189
Alw26I GTCTC 1 cut(s) 337
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 275
AsiGI ACCGGT 1 cut(s) 161
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 2 cut(s) 226, 380
AsuHPI GGTGA 3 cut(s) 40, 94, 151
AvaII GGWCC 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 220
BanI GGYRCC 1 cut(s) 164
Bbv12I GWGCWC 2 cut(s) 119, 189
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 287
BccI CCATC 2 cut(s) 128, 391
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 1 cut(s) 230
BisI GCNGC 2 cut(s) 80, 276
BlsI GCNGC 2 cut(s) 81, 277
Bme18I GGWCC 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 226, 380
BmiI GGNNCC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 2 cut(s) 254, 330
BpuEI CTTGAG 1 cut(s) 133
BsaWI WCCGGW 2 cut(s) 161, 173
Bse118I RCCGGY 2 cut(s) 140, 161
BseMII CTCAG 3 cut(s) 48, 293, 321
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 161
BsiHKAI GWGCWC 2 cut(s) 119, 189
BsiSI CCGG 3 cut(s) 141, 162, 174
BsmAI GTCTC 1 cut(s) 337
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 3 cut(s) 119, 189, 220
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 2 cut(s) 77, 80
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 3 cut(s) 47, 292, 322
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 164
BsrFI RCCGGY 2 cut(s) 140, 161
BssAI RCCGGY 2 cut(s) 140, 161
BssMI GATC 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 142, 185
BstDEI CTNAG 4 cut(s) 34, 254, 279, 330
BstFNI CGCG 1 cut(s) 251
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSLI GKGCMC 1 cut(s) 220
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 227
BtrI CACGTC 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 142, 185
CfoI GCGC 1 cut(s) 253
Cfr10I RCCGGY 2 cut(s) 140, 161
Cfr13I GGNCC 2 cut(s) 226, 380
CspAI ACCGGT 1 cut(s) 161
CviJI RGCY 7 cut(s) 38, 194, 227, 278, 288, 314, 329
CviKI_1 RGCY 7 cut(s) 38, 194, 227, 278, 288, 314, 329
DdeI CTNAG 4 cut(s) 34, 254, 279, 330
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 109
FaiI YATR 3 cut(s) 14, 204, 305
Fnu4HI GCNGC 2 cut(s) 80, 276
Fsp4HI GCNGC 2 cut(s) 80, 276
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 252
GluI GCNGC 2 cut(s) 80, 276
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 227
HapII CCGG 3 cut(s) 141, 162, 174
HhaI GCGC 1 cut(s) 253
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HpaII CCGG 3 cut(s) 141, 162, 174
HphI GGTGA 3 cut(s) 40, 94, 151
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 1 cut(s) 374
Hpy188III TCNNGA 3 cut(s) 25, 112, 293
Hpy8I GTNNAC 1 cut(s) 380
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 2 cut(s) 31, 61
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 2 cut(s) 206, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 4 cut(s) 34, 254, 279, 330
HpySE526I ACGT 1 cut(s) 369
HspAI GCGC 1 cut(s) 251
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 7 cut(s) 38, 154, 175, 187, 223, 306, 372
Lsp1109I GCAGC 1 cut(s) 287
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 369
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 5 cut(s) 46, 62, 82, 91, 115
MhlI GDGCHC 3 cut(s) 119, 189, 220
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 9 cut(s) 41, 71, 115, 164, 178, 181, 206, 289, 325
MroNI GCCGGC 1 cut(s) 140
MspI CCGG 3 cut(s) 141, 162, 174
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 224
NaeI GCCGGC 1 cut(s) 142
NdeII GATC 1 cut(s) 268
NgoMIV GCCGGC 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 166
PdiI GCCGGC 1 cut(s) 142
PinAI ACCGGT 1 cut(s) 161
PkrI GCNGC 2 cut(s) 81, 277
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 2 cut(s) 226, 380
SatI GCNGC 2 cut(s) 80, 276
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 2 cut(s) 226, 380
SduI GDGCHC 3 cut(s) 119, 189, 220
SetI ASST 9 cut(s) 23, 33, 40, 53, 107, 150, 280, 300, 372
SgrAI CRCCGGYG 1 cut(s) 161
SinI GGWCC 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SsiI CCGC 2 cut(s) 77, 80
SspMI CTAG 1 cut(s) 230
TaiI ACGT 1 cut(s) 372
TaqI TCGA 1 cut(s) 271
TauI GCSGC 1 cut(s) 82
TscAI CASTG 1 cut(s) 287
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 369
TspRI CASTG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.