Prupe.5G148100_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0010709
Physical Location & Seq
Reverse (-)
13548039 .. 13550107
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G148100.1

Sequence Viewer

Length: 1062 bp
ATGTTGGGTCTTAATCTTATCCACAAGTTCTTGAATCTTGTAGCTCCCCCTTTTACCTTCTTCTCCCTCTGCCTCTTCCTGCCACCCTTTTATCTCTTCAAGTCCTTCCTCTCCGTGTTGAGCTCCATTTTCAGTGAAAACGTCAATGGAAAGGTGGTCCTCATCACCGGTGCCTCCTCTGGTATTGGAGAGCATTTGGCTTATGAGTATGCAAAAAGAGGGGCACGGTTAGTTCTTGTTGGGAGGAGAGAGGACTCATTGAGAGAAGTTGTTGATCGAGCAAGTGACTGTGGCTCCCCAGATGTTCTTATGGTTCGTGCTGATGTTTCCAAGGTTGAAGACTGCAAGAGAATTGTTGATGAAACAATCAACCACTTTGGAAGGTTGGACCATCTGGTGAATAATGCTGGGATCACTTCACTTGGCATGTTGGAAGAAGCAACTGATATCACTAATTTTAGAGCCATCATGGACACAAACTTCTGGGGTTCAGTTTATACGACCCGTTTTGCAATTCCACATCTGAGAAGCAGCAAAGGTAAAATCGTGGTGCTTTCTTCCGCTGCTTCGTGGTTGCCTATACCAAGGCAGAGCATTTACAATGCAAGTAAAGCAGCTCTGTTAAGCATGTATGAGACCCTGAGAGTTGAGTTTGGTCCAAACATCCAAATCACAATTGTAACTCCTGGATACATAGAGTCTGAGCTCACCCAAGGCAAATTTTTAATGAGTGATGACGGCGAGATGATAGTGGATCAAGACTTGAGAGATGCTCAAGTAAGTGCGACTCCAGTTGGGTCAGTGGAAGGGTGCGCAAAAGCAATAGTGAACAGTGTGTGCCGTGGGGACAGGTACTTGACAGAGCCAGAATGGTTCGGGGTGACATATATATGGAAGGTGTTTTGCCCTGAGCTGCTGGAGTGGGGTTATAGATTGATGTACGTGACAAGGCCAGGCTCTTCGGCCAAAGAAGCACCAAGCAAGAAGATCTTGGATTACACTGGAGCCAAGAACGTACTCTACCCTGAAACCCTCCACAGTCCTGAAGTCAAGACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0016020 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

354

Amino Acids

39.26

Weight (kDa)

5.94

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010709)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50600 AT5G50700
fragaria_vesca FvH4_5g08690 FvH4_5g08690 FvH4_5g08690
malus_domestica MD14G1153000.v1.1
prunus_persica Prupe.5G148100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0189581 RchiOBHm_Chr7g0189691
rosa_laevigata RLG00000004597
rosa_multiflora Rmu_sc0001924.1_g000017
rosa_roxburghii Rroxscaffold_3G00265260
rosa_rugosa Rorug06G0499100
rosa_samantha Rh7AG104200 Rh7BG106800 Rh7CG108900 Rh7DG106200 Rh7DG107300
rosa_wichuraiana Rw7G008990 Rw7G009020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 814
AccB1I GGYRCC 1 cut(s) 170
AciI CCGC 1 cut(s) 561
AclWI GGATC 2 cut(s) 419, 762
AcoI YGGCCR 1 cut(s) 963
AcsI RAATTY 1 cut(s) 719
AfaI GTAC 3 cut(s) 854, 941, 1017
AgeI ACCGGT 1 cut(s) 167
AgsI TTSAA 3 cut(s) 34, 100, 338
AjnI CCWGG 2 cut(s) 685, 952
AluBI AGCT 5 cut(s) 44, 123, 617, 706, 913
AluI AGCT 5 cut(s) 44, 123, 617, 706, 913
Alw21I GWGCWC 2 cut(s) 125, 708
Alw26I GTCTC 1 cut(s) 629
AlwI GGATC 2 cut(s) 419, 762
AoxI GGCC 2 cut(s) 950, 963
ApeKI GCWGC 4 cut(s) 531, 563, 614, 913
ApoI RAATTY 1 cut(s) 719
AsiGI ACCGGT 1 cut(s) 167
AspLEI GCGC 1 cut(s) 815
AspS9I GGNCC 3 cut(s) 157, 388, 656
AsuHPI GGTGA 4 cut(s) 157, 409, 700, 892
AvaII GGWCC 3 cut(s) 157, 388, 656
BaeGI GKGCMC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 2 cut(s) 125, 708
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 2 cut(s) 125, 708
BbvI GCAGC 4 cut(s) 543, 550, 626, 900
BccI CCATC 2 cut(s) 399, 473
BceAI ACGGC 2 cut(s) 754, 825
BciT130I CCWGG 2 cut(s) 687, 954
BciVI GTATCC 1 cut(s) 683
BcoDI GTCTC 1 cut(s) 629
BfuI GTATCC 1 cut(s) 683
BglII AGATCT 1 cut(s) 987
BisI GCNGC 4 cut(s) 532, 564, 615, 914
BlsI GCNGC 4 cut(s) 533, 565, 616, 915
Bme1390I CCNGG 2 cut(s) 687, 954
Bme18I GGWCC 3 cut(s) 157, 388, 656
BmgT120I GGNCC 3 cut(s) 157, 388, 656
BmiI GGNNCC 3 cut(s) 172, 295, 1006
BmrFI CCNGG 2 cut(s) 687, 954
BmsI GCATC 1 cut(s) 760
BpiI GAAGAC 1 cut(s) 345
BplI GAGNNNNNCTC 2 cut(s) 757, 789
BpmI CTGGAG 3 cut(s) 774, 938, 1023
Bpu10I CCTNAGC 1 cut(s) 909
BpuEI CTTGAG 2 cut(s) 759, 784
BsaAI YACGTR 1 cut(s) 943
BsaI GGTCTC 1 cut(s) 629
BsaJI CCNNGG 4 cut(s) 330, 584, 712, 841
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 791, 1006
BseBI CCWGG 2 cut(s) 687, 954
BseDI CCNNGG 4 cut(s) 330, 584, 712, 841
BseGI GGATG 1 cut(s) 663
BseMII CTCAG 4 cut(s) 515, 632, 693, 900
BseNI ACTGG 2 cut(s) 791, 1006
BseRI GAGGAG 2 cut(s) 166, 259
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 4 cut(s) 543, 550, 626, 900
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 2 cut(s) 952, 965
BshNI GGYRCC 1 cut(s) 170
BshTI ACCGGT 1 cut(s) 167
BsiHKAI GWGCWC 2 cut(s) 125, 708
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 860
BsmAI GTCTC 1 cut(s) 629
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 2 cut(s) 952, 965
Bso31I GGTCTC 1 cut(s) 629
Bsp1286I GDGCHC 3 cut(s) 125, 226, 708
Bsp143I GATC 4 cut(s) 274, 411, 754, 987
BspACI CCGC 1 cut(s) 561
BspANI GGCC 2 cut(s) 952, 965
BspCNI CTCAG 4 cut(s) 516, 633, 694, 901
BspLI GGNNCC 3 cut(s) 172, 295, 1006
BspPI GGATC 2 cut(s) 419, 762
BspQI GCTCTTC 1 cut(s) 964
BspT107I GGYRCC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 629
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 2 cut(s) 791, 1006
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 4 cut(s) 330, 584, 712, 841
BssMI GATC 4 cut(s) 274, 411, 754, 987
BssT1I CCWWGG 3 cut(s) 330, 584, 712
Bst2UI CCWGG 2 cut(s) 687, 954
Bst4CI ACNGT 4 cut(s) 228, 290, 833, 1040
Bst6I CTCTTC 3 cut(s) 80, 101, 964
BstBAI YACGTR 1 cut(s) 943
BstDEI CTNAG 4 cut(s) 524, 641, 702, 909
BstDSI CCRYGG 1 cut(s) 841
BstF5I GGATG 1 cut(s) 663
BstHHI GCGC 1 cut(s) 815
BstKTI GATC 4 cut(s) 277, 414, 757, 990
BstMAI GTCTC 1 cut(s) 629
BstMBI GATC 4 cut(s) 274, 411, 754, 987
BstMWI GCNNNNNNNGC 2 cut(s) 611, 971
BstNI CCWGG 2 cut(s) 687, 954
BstNSI RCATGY 2 cut(s) 430, 631
BstSCI CCNGG 2 cut(s) 685, 952
BstSLI GKGCMC 1 cut(s) 226
BstV1I GCAGC 4 cut(s) 543, 550, 626, 900
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 987
BstYI RGATCY 1 cut(s) 987
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 2 cut(s) 952, 965
BtgI CCRYGG 1 cut(s) 841
BtsCI GGATG 1 cut(s) 663
BtsIMutI CAGTG 4 cut(s) 139, 807, 838, 999
CfoI GCGC 1 cut(s) 815
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 3 cut(s) 157, 388, 656
Csp6I GTAC 3 cut(s) 853, 940, 1016
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 3 cut(s) 427, 469, 628
CviQI GTAC 3 cut(s) 853, 940, 1016
DdeI CTNAG 4 cut(s) 524, 641, 702, 909
DpnI GATC 4 cut(s) 276, 413, 756, 989
DpnII GATC 4 cut(s) 274, 411, 754, 987
EaeI YGGCCR 1 cut(s) 963
Eam1104I CTCTTC 3 cut(s) 80, 101, 964
EarI CTCTTC 3 cut(s) 80, 101, 964
Ecl136II GAGCTC 2 cut(s) 123, 706
Eco130I CCWWGG 3 cut(s) 330, 584, 712
Eco24I GRGCYC 2 cut(s) 125, 708
Eco31I GGTCTC 1 cut(s) 629
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 3 cut(s) 157, 388, 656
Eco53kI GAGCTC 2 cut(s) 123, 706
EcoICRI GAGCTC 2 cut(s) 123, 706
EcoRII CCWGG 2 cut(s) 685, 952
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 3 cut(s) 330, 584, 712
EcoT38I GRGCYC 2 cut(s) 125, 708
ErhI CCWWGG 3 cut(s) 330, 584, 712
FaeI CATG 3 cut(s) 430, 472, 631
FalI AAGNNNNNCTT 2 cut(s) 974, 1006
FaqI GGGAC 1 cut(s) 860
FatI CATG 3 cut(s) 426, 468, 627
Fnu4HI GCNGC 4 cut(s) 532, 564, 615, 914
FokI GGATG 1 cut(s) 650
FriOI GRGCYC 2 cut(s) 125, 708
Fsp4HI GCNGC 4 cut(s) 532, 564, 615, 914
FspI TGCGCA 1 cut(s) 814
GlaI GCGC 1 cut(s) 814
GluI GCNGC 4 cut(s) 532, 564, 615, 914
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 3 cut(s) 774, 938, 1023
HaeIII GGCC 2 cut(s) 952, 965
HapII CCGG 1 cut(s) 168
HhaI GCGC 1 cut(s) 815
Hin1II CATG 3 cut(s) 430, 472, 631
Hin6I GCGC 1 cut(s) 813
HinP1I GCGC 1 cut(s) 813
HinfI GANTC 4 cut(s) 34, 254, 698, 787
HpaII CCGG 1 cut(s) 168
HphI GGTGA 4 cut(s) 157, 409, 700, 892
Hpy166II GTNNAC 1 cut(s) 829
Hpy188I TCNGA 2 cut(s) 525, 703
Hpy188III TCNNGA 4 cut(s) 31, 758, 1043, 1051
Hpy8I GTNNAC 1 cut(s) 829
HpyAV CCTTC 5 cut(s) 67, 115, 375, 800, 889
HpyCH4III ACNGT 4 cut(s) 228, 290, 833, 1040
HpyCH4IV ACGT 3 cut(s) 141, 942, 1014
HpyCH4V TGCA 4 cut(s) 212, 345, 512, 605
HpyF10VI GCNNNNNNNGC 2 cut(s) 611, 971
HpyF3I CTNAG 4 cut(s) 524, 641, 702, 909
HpySE526I ACGT 3 cut(s) 141, 942, 1014
Hsp92II CATG 3 cut(s) 430, 472, 631
HspAI GCGC 1 cut(s) 813
Kzo9I GATC 4 cut(s) 274, 411, 754, 987
LguI GCTCTTC 1 cut(s) 964
LmnI GCTCC 4 cut(s) 49, 128, 299, 1004
Lsp1109I GCAGC 4 cut(s) 543, 550, 626, 900
LweI GCATC 1 cut(s) 760
MaeII ACGT 3 cut(s) 141, 942, 1014
MaeIII GTNAC 4 cut(s) 284, 679, 880, 943
MalI GATC 4 cut(s) 276, 413, 756, 989
MboI GATC 4 cut(s) 274, 411, 754, 987
MboII GAAGA 8 cut(s) 52, 67, 88, 350, 446, 549, 951, 997
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 1 cut(s) 987
MhlI GDGCHC 3 cut(s) 125, 226, 708
MluCI AATT 5 cut(s) 351, 454, 513, 675, 719
MlyI GAGTC 3 cut(s) 248, 707, 781
MmeI TCCRAC 2 cut(s) 366, 411
MseI TTAA 3 cut(s) 12, 623, 725
MslI CAYNNNNRTG 1 cut(s) 889
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 687, 954
MunI CAATTG 1 cut(s) 675
MvaI CCWGG 2 cut(s) 687, 954
MwoI GCNNNNNNNGC 2 cut(s) 611, 971
NdeII GATC 4 cut(s) 274, 411, 754, 987
NlaIII CATG 3 cut(s) 430, 472, 631
NlaIV GGNNCC 3 cut(s) 172, 295, 1006
NmuCI GTSAC 3 cut(s) 284, 880, 943
NsbI TGCGCA 1 cut(s) 814
NspI RCATGY 2 cut(s) 430, 631
PciSI GCTCTTC 1 cut(s) 964
PfeI GAWTC 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 685
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 4 cut(s) 533, 565, 616, 915
PleI GAGTC 3 cut(s) 248, 706, 781
PpsI GAGTC 3 cut(s) 248, 706, 781
Ppu21I YACGTR 1 cut(s) 943
Psp124BI GAGCTC 2 cut(s) 125, 708
Psp6I CCWGG 2 cut(s) 685, 952
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 685, 952
PspN4I GGNNCC 3 cut(s) 172, 295, 1006
PspPI GGNCC 3 cut(s) 157, 388, 656
PsrI GAACNNNNNNTAC 2 cut(s) 1004, 1036
PsuI RGATCY 1 cut(s) 987
RsaI GTAC 3 cut(s) 854, 941, 1017
RsaNI GTAC 3 cut(s) 853, 940, 1016
RseI CAYNNNNRTG 1 cut(s) 889
SacI GAGCTC 2 cut(s) 125, 708
SapI GCTCTTC 1 cut(s) 964
SaqAI TTAA 3 cut(s) 12, 623, 725
SatI GCNGC 4 cut(s) 532, 564, 615, 914
Sau3AI GATC 4 cut(s) 274, 411, 754, 987
Sau96I GGNCC 3 cut(s) 157, 388, 656
SchI GAGTC 3 cut(s) 248, 707, 781
ScrFI CCNGG 2 cut(s) 687, 954
SduI GDGCHC 3 cut(s) 125, 226, 708
SfaNI GCATC 1 cut(s) 760
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 3 cut(s) 157, 388, 656
SmiMI CAYNNNNRTG 1 cut(s) 889
SmlI CTYRAG 2 cut(s) 763, 774
SmoI CTYRAG 2 cut(s) 763, 774
Sse9I AATT 5 cut(s) 351, 454, 513, 675, 719
SsiI CCGC 1 cut(s) 561
SstI GAGCTC 2 cut(s) 125, 708
StyD4I CCNGG 2 cut(s) 685, 952
StyI CCWWGG 3 cut(s) 330, 584, 712
TaaI ACNGT 4 cut(s) 228, 290, 833, 1040
TaiI ACGT 3 cut(s) 144, 945, 1017
TaqI TCGA 1 cut(s) 277
TasI AATT 5 cut(s) 351, 454, 513, 675, 719
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 3 cut(s) 12, 623, 725
Tru9I TTAA 3 cut(s) 12, 623, 725
TscAI CASTG 4 cut(s) 139, 807, 838, 1006
TseFI GTSAC 3 cut(s) 284, 880, 943
TseI GCWGC 4 cut(s) 531, 563, 614, 913
Tsp45I GTSAC 3 cut(s) 284, 880, 943
TspDTI ATGAA 1 cut(s) 375
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 4 cut(s) 139, 807, 838, 1006
VpaK11BI GGWCC 3 cut(s) 157, 388, 656
XapI RAATTY 1 cut(s) 719
XceI RCATGY 2 cut(s) 430, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.