Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010709

Physical Location & Seq

Genomic Coordinates Reverse (-)

8028617 .. 8030927

Gene Structure 2311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG106800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGATTGATCCTTTTGGGTATCTTGATTAATGGTACGATGGGTATGTTTATGTGTGATGCAGTGGACCATCTGGTGAATAATGCTGGGATCACTACTTGTAGCATGTTGGAAGATGTCACCGATATCACAAATTTCAGATCCGTAATGGATACAAACTTCTGGGGATCCGTCTATACCACTCATTTTGCAGCTCCACACCTAAGAAACAACAAAGGTAGAATCGTGGTGCTTTCTTCCGTTAATGCATGGTTGCCTGTGCCAAGAATGAGCATATACAATGCAAGTAAAGCAGCTATGTTGAGCATGTTTGAGACACTGAGGGTTGAATTTGGGCCAGAAGTTCATATAACAATCGTGACTCCCGGATACATAGAGTCTGAGATGAACAAAGGCAAATACTTATCGCCTGAAGGCAAGATGACCGTAGATCAAGAAATGAGGGATGTTCAAGTTAGCGCAATTCCTGTTGAAAGAGTGCAAGAATGCGCGAATGCAATTGTGAACAGTGTTTGTCGTGGACAAAGGTGCTTGACAGAGCCAGCATGGTATAAAGTCATATATACGTGGAAGGTGTTCTGCCCTGAGCTACTTGAATGGGGTTACAAATTTTTCTACACGGCTAGGCCTGGGGCTCCTGCTAATGAAGCACCTAGCAAAGATATCTTGGACTACACCGGCGTGAAGAATGTCCTGTACCCCGAGTCCCTCCACAATCCTGAGATCAAGACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0016020 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

245

Amino Acids

27.5

Weight (kDa)

5.58

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	20 - 132	8.8e-27	short chain dehydrogenase
adh_short_C2	PF13561	20 - 166	5.6e-19	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50600 AT5G50700
fragaria_vesca	FvH4_5g08690 FvH4_5g08690 FvH4_5g08690
malus_domestica	MD14G1153000.v1.1
prunus_persica	Prupe.5G148100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0189581 RchiOBHm_Chr7g0189691
rosa_laevigata	RLG00000004597
rosa_multiflora	Rmu_sc0001924.1_g000017
rosa_roxburghii	Rroxscaffold_3G00265260
rosa_rugosa	Rorug06G0499100
rosa_samantha	Rh7AG104200 Rh7BG106800 Rh7CG108900 Rh7DG106200 Rh7DG107300
rosa_wichuraiana	Rw7G008990 Rw7G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	491
AclWI	GGATC	5 cut(s)	4, 98, 135, 162, 175
AcsI	RAATTY	3 cut(s)	133, 329, 608
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	37, 698
AgsI	TTSAA	4 cut(s)	329, 452, 473, 596
AjnI	CCWGG	1 cut(s)	628
AleI	CACNNNNGTG	1 cut(s)	680
AluBI	AGCT	3 cut(s)	194, 296, 589
AluI	AGCT	3 cut(s)	194, 296, 589
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	5 cut(s)	4, 98, 135, 162, 175
Ama87I	CYCGRG	1 cut(s)	701
AoxI	GGCC	2 cut(s)	335, 626
ApeKI	GCWGC	2 cut(s)	191, 293
ApoI	RAATTY	3 cut(s)	133, 329, 608
AseI	ATTAAT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	575
AspLEI	GCGC	2 cut(s)	461, 491
AspS9I	GGNCC	2 cut(s)	67, 335
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	2 cut(s)	88, 112
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	637
BbvI	GCAGC	2 cut(s)	203, 305
BccI	CCATC	2 cut(s)	34, 78
BceAI	ACGGC	1 cut(s)	636
BciT130I	CCWGG	1 cut(s)	630
BciVI	GTATCC	2 cut(s)	145, 362
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	2 cut(s)	624, 654
BfuI	GTATCC	2 cut(s)	145, 362
BisI	GCNGC	2 cut(s)	192, 294
BlsI	GCNGC	2 cut(s)	193, 295
Bme1390I	CCNGG	2 cut(s)	366, 630
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	701
BmgT120I	GGNCC	2 cut(s)	67, 335
BmiI	GGNNCC	2 cut(s)	169, 636
BmrFI	CCNGG	2 cut(s)	366, 630
BmsI	GCATC	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	629
Bse118I	RCCGGY	1 cut(s)	677
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	629
BseGI	GGATG	1 cut(s)	451
BseMII	CTCAG	4 cut(s)	311, 372, 576, 711
BseXI	GCAGC	2 cut(s)	203, 305
BseYI	CCCAGC	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	491
BshFI	GGCC	2 cut(s)	337, 628
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	2 cut(s)	366, 678
BslFI	GGGAC	1 cut(s)	691
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	691
BsmI	GAATGC	2 cut(s)	491, 499
BsnI	GGCC	2 cut(s)	337, 628
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	6 cut(s)	9, 90, 140, 167, 430, 723
BspANI	GGCC	2 cut(s)	337, 628
BspCNI	CTCAG	4 cut(s)	312, 373, 577, 712
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	2 cut(s)	169, 636
BspPI	GGATC	5 cut(s)	4, 98, 135, 162, 175
BsrFI	RCCGGY	1 cut(s)	677
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	1 cut(s)	629
BssMI	GATC	6 cut(s)	9, 90, 140, 167, 430, 723
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	427, 509
BstBAI	YACGTR	1 cut(s)	567
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	5 cut(s)	203, 320, 381, 585, 720
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	491
BstHHI	GCGC	2 cut(s)	461, 491
BstKTI	GATC	6 cut(s)	12, 93, 143, 170, 433, 726
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	6 cut(s)	9, 90, 140, 167, 430, 723
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 647
BstNI	CCWGG	1 cut(s)	630
BstNSI	RCATGY	2 cut(s)	109, 310
BstSCI	CCNGG	2 cut(s)	364, 628
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	203, 305
BstX2I	RGATCY	2 cut(s)	140, 167
BstYI	RGATCY	2 cut(s)	140, 167
BsuI	GTATCC	2 cut(s)	145, 362
BsuRI	GGCC	2 cut(s)	337, 628
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	3 cut(s)	69, 317, 514
Cac8I	GCNNGC	1 cut(s)	543
CfoI	GCGC	2 cut(s)	461, 491
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	2 cut(s)	67, 335
Csp6I	GTAC	2 cut(s)	36, 697
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	4 cut(s)	106, 249, 307, 546
CviJI	RGCY	8 cut(s)	194, 296, 337, 541, 589, 623, 628, 635
CviKI_1	RGCY	8 cut(s)	194, 296, 337, 541, 589, 623, 628, 635
CviQI	GTAC	2 cut(s)	36, 697
DdeI	CTNAG	5 cut(s)	203, 320, 381, 585, 720
DpnI	GATC	6 cut(s)	11, 92, 142, 169, 432, 725
DpnII	GATC	6 cut(s)	9, 90, 140, 167, 430, 723
Eco147I	AGGCCT	1 cut(s)	628
Eco24I	GRGCYC	1 cut(s)	637
Eco32I	GATATC	2 cut(s)	127, 664
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	628
EcoRV	GATATC	2 cut(s)	127, 664
EcoT22I	ATGCAT	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	637
FaeI	CATG	4 cut(s)	109, 252, 310, 549
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	4 cut(s)	105, 248, 306, 545
Fnu4HI	GCNGC	2 cut(s)	192, 294
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	2 cut(s)	192, 294
FspBI	CTAG	2 cut(s)	624, 654
GlaI	GCGC	2 cut(s)	460, 490
GluI	GCNGC	2 cut(s)	192, 294
GsaI	CCCAGC	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	337, 628
HapII	CCGG	2 cut(s)	366, 678
HhaI	GCGC	2 cut(s)	461, 491
Hin1II	CATG	4 cut(s)	109, 252, 310, 549
Hin6I	GCGC	2 cut(s)	459, 489
HinP1I	GCGC	2 cut(s)	459, 489
HinfI	GANTC	4 cut(s)	222, 361, 377, 704
HpaII	CCGG	2 cut(s)	366, 678
HphI	GGTGA	2 cut(s)	88, 112
Hpy166II	GTNNAC	3 cut(s)	67, 505, 521
Hpy188I	TCNGA	2 cut(s)	140, 382
Hpy188III	TCNNGA	5 cut(s)	25, 358, 434, 719, 727
Hpy8I	GTNNAC	3 cut(s)	67, 505, 521
HpyAV	CCTTC	2 cut(s)	407, 565
HpyCH4III	ACNGT	2 cut(s)	427, 509
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	6 cut(s)	62, 191, 248, 284, 481, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 647
HpyF3I	CTNAG	5 cut(s)	203, 320, 381, 585, 720
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	4 cut(s)	109, 252, 310, 549
HspAI	GCGC	2 cut(s)	459, 489
Kzo9I	GATC	6 cut(s)	9, 90, 140, 167, 430, 723
LmnI	GCTCC	2 cut(s)	199, 640
Lsp1109I	GCAGC	2 cut(s)	203, 305
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	624, 654
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	3 cut(s)	118, 358, 602
MalI	GATC	6 cut(s)	11, 92, 142, 169, 432, 725
MboI	GATC	6 cut(s)	9, 90, 140, 167, 430, 723
MboII	GAAGA	3 cut(s)	125, 228, 697
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	2 cut(s)	140, 167
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	5 cut(s)	133, 329, 462, 498, 608
MlyI	GAGTC	3 cut(s)	355, 386, 713
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	315, 435, 719
Mph1103I	ATGCAT	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	575
MseI	TTAA	2 cut(s)	30, 243
MslI	CAYNNNNRTG	1 cut(s)	680
MspI	CCGG	2 cut(s)	366, 678
MspR9I	CCNGG	2 cut(s)	366, 630
MunI	CAATTG	1 cut(s)	498
Mva1269I	GAATGC	2 cut(s)	491, 499
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	290, 647
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	6 cut(s)	9, 90, 140, 167, 430, 723
NlaIII	CATG	4 cut(s)	109, 252, 310, 549
NlaIV	GGNNCC	2 cut(s)	169, 636
NmuCI	GTSAC	2 cut(s)	118, 358
NsiI	ATGCAT	1 cut(s)	250
NspI	RCATGY	2 cut(s)	109, 310
OliI	CACNNNNGTG	1 cut(s)	680
PceI	AGGCCT	1 cut(s)	628
PctI	GAATGC	2 cut(s)	491, 499
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	1 cut(s)	222
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	193, 295
PleI	GAGTC	3 cut(s)	355, 385, 712
PpsI	GAGTC	3 cut(s)	355, 385, 712
Ppu21I	YACGTR	1 cut(s)	567
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	2 cut(s)	169, 636
PspPI	GGNCC	2 cut(s)	67, 335
PsuI	RGATCY	2 cut(s)	140, 167
RsaI	GTAC	2 cut(s)	37, 698
RsaNI	GTAC	2 cut(s)	36, 697
RseI	CAYNNNNRTG	1 cut(s)	680
SaqAI	TTAA	2 cut(s)	30, 243
SatI	GCNGC	2 cut(s)	192, 294
Sau3AI	GATC	6 cut(s)	9, 90, 140, 167, 430, 723
Sau96I	GGNCC	2 cut(s)	67, 335
SchI	GAGTC	3 cut(s)	355, 386, 713
ScrFI	CCNGG	2 cut(s)	366, 630
SduI	GDGCHC	1 cut(s)	637
SetI	ASST	9 cut(s)	196, 204, 220, 298, 530, 569, 576, 591, 655
SfaNI	GCATC	1 cut(s)	49
SgrAI	CRCCGGYG	1 cut(s)	677
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	680
Sse9I	AATT	5 cut(s)	133, 329, 462, 498, 608
SseBI	AGGCCT	1 cut(s)	628
SspMI	CTAG	2 cut(s)	624, 654
StuI	AGGCCT	1 cut(s)	628
StyD4I	CCNGG	2 cut(s)	364, 628
TaaI	ACNGT	2 cut(s)	427, 509
TaiI	ACGT	1 cut(s)	569
TasI	AATT	5 cut(s)	133, 329, 462, 498, 608
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	2 cut(s)	30, 243
Tru9I	TTAA	2 cut(s)	30, 243
TscAI	CASTG	3 cut(s)	69, 324, 514
TseFI	GTSAC	2 cut(s)	118, 358
TseI	GCWGC	2 cut(s)	191, 293
Tsp45I	GTSAC	2 cut(s)	118, 358
TspDTI	ATGAA	3 cut(s)	335, 401, 660
TspGWI	ACGGA	3 cut(s)	133, 160, 229
TspRI	CASTG	3 cut(s)	69, 324, 514
VpaK11BI	GGWCC	1 cut(s)	67
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	3 cut(s)	133, 329, 608
XceI	RCATGY	2 cut(s)	109, 310
XmnI	GAANNNNTTC	1 cut(s)	575
XspI	CTAG	2 cut(s)	624, 654
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.