Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007981

Physical Location & Seq

Genomic Coordinates Reverse (-)

6091951 .. 6095708

Gene Structure 3758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGGGAAGAGTAGGAGAAATGGGTTTGTGGAAACAGAAAGAGAGTGTTGTGATATTGGGTTGGGTTTGATGATGGAAACCCATGACCAATCATGTAAGAAGATGAATCAGATGGTGATGGTGATGCCTCATCATGAGCCTCAATTTTGCAGTGGTGGTTTTGATGGAGGCACAGCTACACCTTTGTTCTATCCCACAAGAAACAACAACGCAGTGACTACTGATATATACAATACTGCCTCCTCTGATGTTGGTTCAGTTGTGGTGCCAAAGAATCTGCAGCAGCCTTACTACTATGATAGCTTGTCTTTCAGTTCCTCAGGTGGAATGGTGAATGTGAATGTTAGAATTCCTTTTACTCCAGCACAGAGAGCAGAGCTTGAGGCACAGACTGTGATTTACAAGTACATCATGGCATGTGTCCCTGTCCCTCAACAATTACTTCTTTCTATTACCAACAGTTCACCAAATGGAGTGAGGAACTCATCAAGAACAAGAGGAGTGAGAGACATGTTCGAGGGGTTTTCTAAGAGCTTGGATCCAGAGCCATGGAGGTGTAAGAGAACAGATGGTAAGAAATGGAGGTGCTCCAGAGACAGAGGAATTGATCAGAAGTTCTGTGAGAGACACTGCCACAAAAGACGTTCAAGAAAGCATGTGGAATCAATCCCCAACTTACTCAACAACAACATCAACAAGAATGCTAACATGCTAAGTCCAAGGCCTTCAGCTTTCAAGAATTACAATCAAACTCCATTGTCAAGCTCCATGGTGACTCCTGCTGCTGCATCACATGCCCAACCCAGAGCATTGGACTGGTTCATGAATGGAGAAAGCGCCTCTGTTGCTGTTTCTAACCAAGAATGGGAGCAATTGATGCCATTCAAGTTAGGCAGCCACACTAGCAAGCGTGACACAGATGTGGATTTTCCAAAGCAACAAAATGAGAGCTCACTCAATTTGTATAGGGGTGGTAGCCAAGGTCTACAGAGTCAGAGGTCACATGACCATTTGGGAGGAGCTTTAAATTCAAATCAGGCACAACAGACAAGGCATTTCATTGATGCTTGGTCCACTGAGAGAGCTGGTAACGGCATTGATGAGCTTGGCAAGAGGACGAGGGACTCTGTTCCATTGAACCAGAAGCTGCCCCTTTCATCCCTCACTCTATCAATGTCTGGTAAGAATAGTGAAGCCAATGAAGAAAATGGAAATAGGCAAATGGGTGTTGGGGTTTTGGGTTCAGAGAGACAGAATGTTACACAATGGATGAGCCCACTTTCATGGATGAGCTCAACACCTGGTGGACCTTTGGCTGAAGCTTTGTGCCTTGGCATTGCCAGTTCCACAAGAACAACATCCACCAATGGCTGTAGAAACTCAAATGCAGATGTTAGACAAGAGTTTGATTTGATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

474

Amino Acids

52.53

Weight (kDa)

8.99

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	118 - 151	1.9e-11	QLQ
WRC	PF08879	181 - 219	4.2e-14	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24150 AT4G24150 AT4G24150
fragaria_vesca	FvH4_5g10750 FvH4_5g10750 FvH4_5g10750 FvH4_5g10750
malus_domestica	MD06G1121000.v1.1 MD14G1137600.v1.1
prunus_persica	Prupe.5G131600_v2.0.a1 Prupe.5G131600_v2.0.a1
pyrus_communis	pycom06g11230 pycom14g11280
rosa_chinensis	RchiOBHm_Chr7g0187381
rosa_laevigata	RLG00000004788
rosa_multiflora	Rmu_sc0002110.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267510
rosa_rugosa	Rorug06G0481200
rosa_samantha	Rh7AG085600 Rh7BG087000 Rh7CG086700 Rh7CG086800 Rh7DG087800
rosa_wichuraiana	Rw7G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	985
AclWI	GGATC	2 cut(s)	533, 546
AcsI	RAATTY	2 cut(s)	348, 1027
AcuI	CTGAAG	2 cut(s)	711, 1338
AdeI	CACNNNGTG	1 cut(s)	1304
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	865
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	648, 736, 886, 1032, 1138
AjnI	CCWGG	1 cut(s)	1300
AleI	CACNNNNGTG	1 cut(s)	920
Alw21I	GWGCWC	3 cut(s)	590, 953, 1295
Alw26I	GTCTC	4 cut(s)	501, 588, 619, 1243
AlwI	GGATC	2 cut(s)	533, 546
AlwNI	CAGNNNCTG	1 cut(s)	1147
AoxI	GGCC	1 cut(s)	722
ApeKI	GCWGC	6 cut(s)	280, 283, 782, 785, 894, 1147
ApoI	RAATTY	2 cut(s)	348, 1027
AspLEI	GCGC	1 cut(s)	839
AspS9I	GGNCC	2 cut(s)	1071, 1307
AsuHPI	GGTGA	5 cut(s)	127, 133, 343, 456, 784
AvaII	GGWCC	2 cut(s)	1071, 1307
AxyI	CCTNAGG	1 cut(s)	319
BamHI	GGATCC	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	3 cut(s)	953, 1277, 1295
Bbv12I	GWGCWC	3 cut(s)	590, 953, 1295
BbvI	GCAGC	6 cut(s)	292, 295, 769, 772, 906, 1134
BccI	CCATC	5 cut(s)	67, 106, 112, 158, 563
BceAI	ACGGC	1 cut(s)	1108
BciT130I	CCWGG	1 cut(s)	1302
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	4 cut(s)	501, 588, 619, 1243
BfaI	CTAG	1 cut(s)	903
BfmI	CTRYAG	3 cut(s)	278, 986, 1372
BfoI	RGCGCY	1 cut(s)	840
BisI	GCNGC	6 cut(s)	281, 284, 783, 786, 895, 1148
BlsI	GCNGC	6 cut(s)	282, 285, 784, 787, 896, 1149
Bme1390I	CCNGG	1 cut(s)	1302
Bme18I	GGWCC	2 cut(s)	1071, 1307
BmgT120I	GGNCC	2 cut(s)	1071, 1307
BmiI	GGNNCC	2 cut(s)	267, 540
BmrFI	CCNGG	1 cut(s)	1302
BmsI	GCATC	4 cut(s)	114, 797, 867, 1054
BpmI	CTGGAG	2 cut(s)	345, 574
BpuEI	CTTGAG	1 cut(s)	401
BsaJI	CCNNGG	5 cut(s)	548, 719, 768, 979, 1330
Bsc4I	CCNNNNNNNGG	1 cut(s)	865
Bse1I	ACTGG	2 cut(s)	821, 1341
Bse21I	CCTNAGG	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	1335
BseBI	CCWGG	1 cut(s)	1302
BseDI	CCNNGG	5 cut(s)	548, 719, 768, 979, 1330
BseGI	GGATG	4 cut(s)	1157, 1275, 1293, 1358
BseLI	CCNNNNNNNGG	1 cut(s)	865
BseMI	GCAATG	1 cut(s)	1335
BseMII	CTCAG	2 cut(s)	333, 1068
BseNI	ACTGG	2 cut(s)	821, 1341
BseRI	GAGGAG	3 cut(s)	232, 513, 1032
BseXI	GCAGC	6 cut(s)	292, 295, 769, 772, 906, 1134
BshFI	GGCC	1 cut(s)	724
BshNI	GGYRCC	1 cut(s)	265
BsiHKAI	GWGCWC	3 cut(s)	590, 953, 1295
BslFI	GGGAC	3 cut(s)	407, 413, 1136
BslI	CCNNNNNNNGG	1 cut(s)	865
BsmAI	GTCTC	4 cut(s)	501, 588, 619, 1243
BsmFI	GGGAC	3 cut(s)	407, 413, 1136
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	1 cut(s)	724
Bsp1286I	GDGCHC	4 cut(s)	590, 953, 1277, 1295
Bsp143I	GATC	2 cut(s)	538, 607
Bsp19I	CCATGG	2 cut(s)	548, 768
BspANI	GGCC	1 cut(s)	724
BspCNI	CTCAG	2 cut(s)	332, 1069
BspHI	TCATGA	2 cut(s)	133, 822
BspLI	GGNNCC	2 cut(s)	267, 540
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	2 cut(s)	533, 546
BspT107I	GGYRCC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	1335
BsrI	ACTGG	2 cut(s)	821, 1341
BssECI	CCNNGG	5 cut(s)	548, 719, 768, 979, 1330
BssMI	GATC	2 cut(s)	538, 607
BssT1I	CCWWGG	5 cut(s)	548, 719, 768, 979, 1330
Bst2UI	CCWGG	1 cut(s)	1302
Bst4CI	ACNGT	2 cut(s)	394, 461
Bst6I	CTCTTC	1 cut(s)	2
BstAPI	GCANNNNNTGC	2 cut(s)	794, 877
BstC8I	GCNNGC	1 cut(s)	908
BstDEI	CTNAG	4 cut(s)	319, 528, 713, 1077
BstDSI	CCRYGG	2 cut(s)	548, 768
BstF5I	GGATG	4 cut(s)	1157, 1275, 1293, 1358
BstH2I	RGCGCY	1 cut(s)	840
BstHHI	GCGC	1 cut(s)	839
BstKTI	GATC	2 cut(s)	541, 610
BstMAI	GTCTC	4 cut(s)	501, 588, 619, 1243
BstMBI	GATC	2 cut(s)	538, 607
BstMWI	GCNNNNNNNGC	5 cut(s)	371, 794, 845, 877, 903
BstNI	CCWGG	1 cut(s)	1302
BstNSI	RCATGY	5 cut(s)	420, 514, 659, 712, 797
BstSCI	CCNGG	1 cut(s)	1300
BstSFI	CTRYAG	3 cut(s)	278, 986, 1372
BstV1I	GCAGC	6 cut(s)	292, 295, 769, 772, 906, 1134
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	3 cut(s)	549, 811, 1284
BstYI	RGATCY	1 cut(s)	538
Bsu36I	CCTNAGG	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	724
BtgI	CCRYGG	2 cut(s)	548, 768
BtsCI	GGATG	4 cut(s)	1157, 1275, 1293, 1358
BtsI	GCAGTG	3 cut(s)	157, 219, 628
BtsIMutI	CAGTG	4 cut(s)	157, 219, 628, 1074
Cac8I	GCNNGC	1 cut(s)	908
CaiI	CAGNNNCTG	1 cut(s)	1147
CciI	TCATGA	2 cut(s)	133, 822
CfoI	GCGC	1 cut(s)	839
Cfr13I	GGNCC	2 cut(s)	1071, 1307
CsiI	ACCWGGT	1 cut(s)	1300
Csp6I	GTAC	1 cut(s)	406
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	4 cut(s)	319, 528, 713, 1077
DpnI	GATC	2 cut(s)	540, 609
DpnII	GATC	2 cut(s)	538, 607
DraI	TTTAAA	1 cut(s)	1026
DraIII	CACNNNGTG	1 cut(s)	1304
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Ecl136II	GAGCTC	2 cut(s)	951, 1293
Eco130I	CCWWGG	5 cut(s)	548, 719, 768, 979, 1330
Eco147I	AGGCCT	1 cut(s)	724
Eco24I	GRGCYC	3 cut(s)	953, 1277, 1295
Eco47I	GGWCC	2 cut(s)	1071, 1307
Eco53kI	GAGCTC	2 cut(s)	951, 1293
Eco57I	CTGAAG	2 cut(s)	711, 1338
Eco81I	CCTNAGG	1 cut(s)	319
EcoICRI	GAGCTC	2 cut(s)	951, 1293
EcoRI	GAATTC	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	1300
EcoT14I	CCWWGG	5 cut(s)	548, 719, 768, 979, 1330
EcoT38I	GRGCYC	3 cut(s)	953, 1277, 1295
ErhI	CCWWGG	5 cut(s)	548, 719, 768, 979, 1330
FaqI	GGGAC	3 cut(s)	407, 413, 1136
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	985
Fnu4HI	GCNGC	6 cut(s)	281, 284, 783, 786, 895, 1148
FokI	GGATG	4 cut(s)	1144, 1282, 1300, 1345
FriOI	GRGCYC	3 cut(s)	953, 1277, 1295
Fsp4HI	GCNGC	6 cut(s)	281, 284, 783, 786, 895, 1148
FspBI	CTAG	1 cut(s)	903
GlaI	GCGC	1 cut(s)	838
GluI	GCNGC	6 cut(s)	281, 284, 783, 786, 895, 1148
GsuI	CTGGAG	2 cut(s)	345, 574
HaeII	RGCGCY	1 cut(s)	840
HaeIII	GGCC	1 cut(s)	724
HhaI	GCGC	1 cut(s)	839
Hin6I	GCGC	1 cut(s)	837
HinP1I	GCGC	1 cut(s)	837
HindIII	AAGCTT	1 cut(s)	1320
HinfI	GANTC	6 cut(s)	106, 274, 662, 775, 991, 1124
HphI	GGTGA	5 cut(s)	127, 133, 343, 456, 784
Hpy166II	GTNNAC	4 cut(s)	464, 986, 1074, 1307
Hpy188I	TCNGA	5 cut(s)	111, 247, 612, 996, 1246
Hpy188III	TCNNGA	7 cut(s)	134, 489, 542, 591, 648, 736, 823
Hpy8I	GTNNAC	4 cut(s)	464, 986, 1074, 1307
HpyAV	CCTTC	1 cut(s)	735
HpyCH4III	ACNGT	2 cut(s)	394, 461
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	4 cut(s)	150, 280, 788, 1388
HpyF10VI	GCNNNNNNNGC	5 cut(s)	371, 794, 845, 877, 903
HpyF3I	CTNAG	4 cut(s)	319, 528, 713, 1077
HpySE526I	ACGT	1 cut(s)	643
HspAI	GCGC	1 cut(s)	837
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	2 cut(s)	538, 607
LmnI	GCTCC	4 cut(s)	593, 770, 868, 1019
Lsp1109I	GCAGC	6 cut(s)	292, 295, 769, 772, 906, 1134
LweI	GCATC	4 cut(s)	114, 797, 867, 1054
MabI	ACCWGGT	1 cut(s)	1300
MaeI	CTAG	1 cut(s)	903
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	6 cut(s)	214, 772, 911, 999, 1088, 1258
MalI	GATC	2 cut(s)	540, 609
MboI	GATC	2 cut(s)	538, 607
MboII	GAAGA	3 cut(s)	19, 112, 1214
MfeI	CAATTG	1 cut(s)	872
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	4 cut(s)	590, 953, 1277, 1295
MluCI	AATT	8 cut(s)	143, 348, 437, 603, 739, 872, 958, 1027
MlyI	GAGTC	3 cut(s)	769, 1000, 1118
MseI	TTAA	2 cut(s)	1025, 1416
MslI	CAYNNNNRTG	3 cut(s)	553, 920, 1282
MspR9I	CCNGG	1 cut(s)	1302
MunI	CAATTG	1 cut(s)	872
Mva1269I	GAATGC	1 cut(s)	706
MvaI	CCWGG	1 cut(s)	1302
MwoI	GCNNNNNNNGC	5 cut(s)	371, 794, 845, 877, 903
NcoI	CCATGG	2 cut(s)	548, 768
NdeII	GATC	2 cut(s)	538, 607
NlaIV	GGNNCC	2 cut(s)	267, 540
NmuCI	GTSAC	4 cut(s)	214, 772, 911, 999
NspI	RCATGY	5 cut(s)	420, 514, 659, 712, 797
OliI	CACNNNNGTG	1 cut(s)	920
PagI	TCATGA	2 cut(s)	133, 822
PceI	AGGCCT	1 cut(s)	724
PciI	ACATGT	1 cut(s)	510
PctI	GAATGC	1 cut(s)	706
PfeI	GAWTC	3 cut(s)	106, 274, 662
PkrI	GCNGC	6 cut(s)	282, 285, 784, 787, 896, 1149
PleI	GAGTC	3 cut(s)	769, 999, 1118
PpsI	GAGTC	3 cut(s)	769, 999, 1118
PscI	ACATGT	1 cut(s)	510
Psp124BI	GAGCTC	2 cut(s)	953, 1295
Psp6I	CCWGG	1 cut(s)	1300
PspGI	CCWGG	1 cut(s)	1300
PspN4I	GGNNCC	2 cut(s)	267, 540
PspPI	GGNCC	2 cut(s)	1071, 1307
PstI	CTGCAG	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	1147
PsuI	RGATCY	1 cut(s)	538
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	3 cut(s)	553, 920, 1282
SacI	GAGCTC	2 cut(s)	953, 1295
SaqAI	TTAA	2 cut(s)	1025, 1416
SatI	GCNGC	6 cut(s)	281, 284, 783, 786, 895, 1148
Sau3AI	GATC	2 cut(s)	538, 607
Sau96I	GGNCC	2 cut(s)	1071, 1307
SchI	GAGTC	3 cut(s)	769, 1000, 1118
ScrFI	CCNGG	1 cut(s)	1302
SduI	GDGCHC	4 cut(s)	590, 953, 1277, 1295
SexAI	ACCWGGT	1 cut(s)	1300
SfaNI	GCATC	4 cut(s)	114, 797, 867, 1054
SfcI	CTRYAG	3 cut(s)	278, 986, 1372
SinI	GGWCC	2 cut(s)	1071, 1307
SmiMI	CAYNNNNRTG	3 cut(s)	553, 920, 1282
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	8 cut(s)	143, 348, 437, 603, 739, 872, 958, 1027
SseBI	AGGCCT	1 cut(s)	724
SspMI	CTAG	1 cut(s)	903
SstI	GAGCTC	2 cut(s)	953, 1295
StuI	AGGCCT	1 cut(s)	724
StyD4I	CCNGG	1 cut(s)	1300
StyI	CCWWGG	5 cut(s)	548, 719, 768, 979, 1330
TaaI	ACNGT	2 cut(s)	394, 461
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	1 cut(s)	516
TasI	AATT	8 cut(s)	143, 348, 437, 603, 739, 872, 958, 1027
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	3 cut(s)	106, 274, 662
Tru1I	TTAA	2 cut(s)	1025, 1416
Tru9I	TTAA	2 cut(s)	1025, 1416
TscAI	CASTG	4 cut(s)	157, 219, 635, 1081
TseFI	GTSAC	4 cut(s)	214, 772, 911, 999
TseI	GCWGC	6 cut(s)	280, 283, 782, 785, 894, 1147
Tsp45I	GTSAC	4 cut(s)	214, 772, 911, 999
TspDTI	ATGAA	7 cut(s)	119, 811, 839, 1048, 1146, 1215, 1272
TspRI	CASTG	4 cut(s)	157, 219, 635, 1081
VpaK11BI	GGWCC	2 cut(s)	1071, 1307
XapI	RAATTY	2 cut(s)	348, 1027
XceI	RCATGY	5 cut(s)	420, 514, 659, 712, 797
XmiI	GTMKAC	1 cut(s)	985
XspI	CTAG	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.