Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007981

Physical Location & Seq

Genomic Coordinates Reverse (-)

62280891 .. 62282710

Gene Structure 1820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004788

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGATGGAAACCCATCACCAATCATTTCCTTGTGAGAAGATGAATCAGATGGTGATGGTGATGCCTCGTCATCCTCATCATGAGCCTCAATTTTGCAGTGGTGGTTTTGATGGAGAAACAGCTAGTAGTAATAGTACACCTTTGTTTTATAACACAAGCAACAACAGCAACCCAGGGATTACTGATATATACAATGCTGCCTCCTCTGATTTTGGTTCAGTTGTGGTGCCAAAGAATCTGCAGCAGCCTTACTACTCTGATAGTTTGTCTTCCAGTTCCTCAGTAGGTGGAATGGTGAATGTGAATGTTAGAATTCCTTTTACTCCAGCTCAGAGAGAAGAGCTTGAGACACAGACTGTGATTTACAAGTATATCATGGCATGCCTCCCTGTCCCTCAACAGTTAATTCTTTCCATCACCAACAATCTATCACCAAATGGAGCAAGATACTCATCAAAAACAAGAGGAGTGAGAGACATGTTGGTGGGATTTTCTAGGAGCTTGGATCCAGAGCCATGGAGGTGTAAGAGAACCGATGGTAAGAAATGGAGGTGCTCCAGAGACATAGCTCCTGATCAGAAATATTGTGAGAGACACTGCCACAAAAGACGTTCAAGAAAGCATGTGGAATCATTCCCCAACTTACTCAACAACAAGAATGCTAACATGCTAAATCCAAAGCCTTCATCTTTCAAGAATAACAATCAAACTCCATTTTCAAGTTCCATGGTGACTCCTGCTGCTGCATCACATGGCCAACCCAGAGCATTGGACTGGTTCGTGAATGGAGAAAGCGCCTCTGTTGCTGTTTCTAACCAAGAATGGGAGCAATTGATGCCATTCAAGTTGGGTTTGAACAGCCACACCAGCAAGCGTGACACAGATGTGGATTTTCCAAAGCAACAAAATGAGAGCTCACTCAATTTGTATAGGGGTGGTAGCCAAGGTCTGCAGAGTCAGAGGTCACATGACTATTTGGGAGGAGCTTTAAATTCAAATCAGGCACAACAGACAAGGCATTTCATTGATGCTTGGTCCACTGAGAAAGATGGTAATGGCATTGATGAGCTTGGCCAGAGCAAGAGGGGCTCTGTTGCATTAAACCAGAAGCTGCCCCTTTCATCCCTCACTCTATCAATGTCTGGTGAGAATAGTGAAGCCAATGAAGAAAATGGAAATAGGCAAATGGGTGTTGGGGTTTTCGGTTCAGAGAGGCAGAATGTAACATGGATGAGCCCACTTTCATGGATGAGCTCAACACCTGGTGGACCTTTGGCTGAAGCTTTGTGCCTTGGCATTGCCGGTTCCACGAGAGCAACAACAACCTCTAATGGCTGTAGAAGCTCAAACGCAGATGTTAGACAAGAATTTGATTTGATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

462

Amino Acids

50.97

Weight (kDa)

8.31

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	106 - 139	3.4e-11	QLQ
WRC	PF08879	170 - 208	8.2e-17	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24150 AT4G24150 AT4G24150
fragaria_vesca	FvH4_5g10750 FvH4_5g10750 FvH4_5g10750 FvH4_5g10750
malus_domestica	MD06G1121000.v1.1 MD14G1137600.v1.1
prunus_persica	Prupe.5G131600_v2.0.a1 Prupe.5G131600_v2.0.a1
pyrus_communis	pycom06g11230 pycom14g11280
rosa_chinensis	RchiOBHm_Chr7g0187381
rosa_laevigata	RLG00000004788
rosa_multiflora	Rmu_sc0002110.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267510
rosa_rugosa	Rorug06G0481200
rosa_samantha	Rh7AG085600 Rh7BG087000 Rh7CG086700 Rh7CG086800 Rh7DG087800
rosa_wichuraiana	Rw7G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	226
AclWI	GGATC	2 cut(s)	500, 513
AcoI	YGGCCR	2 cut(s)	754, 1072
AcsI	RAATTY	3 cut(s)	312, 991, 1367
AcuI	CTGAAG	1 cut(s)	1299
AdeI	CACNNNGTG	1 cut(s)	1265
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	823
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	6 cut(s)	615, 694, 720, 844, 856, 996
AjnI	CCWGG	2 cut(s)	172, 1261
AleI	CACNNNNGTG	1 cut(s)	884
Alw21I	GWGCWC	3 cut(s)	557, 917, 1256
Alw26I	GTCTC	4 cut(s)	341, 468, 555, 586
AlwI	GGATC	2 cut(s)	500, 513
AlwNI	CAGNNNCTG	1 cut(s)	1111
AoxI	GGCC	2 cut(s)	754, 1072
ApeKI	GCWGC	6 cut(s)	197, 241, 244, 740, 743, 1111
ApoI	RAATTY	3 cut(s)	312, 991, 1367
AspLEI	GCGC	1 cut(s)	797
AspS9I	GGNCC	2 cut(s)	1035, 1268
AsuHPI	GGTGA	8 cut(s)	8, 64, 70, 307, 409, 423, 742, 1157
AvaII	GGWCC	2 cut(s)	1035, 1268
BalI	TGGCCA	2 cut(s)	756, 1074
BamHI	GGATCC	1 cut(s)	505
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	4 cut(s)	917, 1091, 1238, 1256
BauI	CACGAG	1 cut(s)	1309
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	3 cut(s)	557, 917, 1256
BbvI	GCAGC	6 cut(s)	184, 253, 256, 727, 730, 1098
BccI	CCATC	7 cut(s)	21, 43, 49, 104, 422, 530, 1043
BciT130I	CCWGG	2 cut(s)	174, 1263
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	4 cut(s)	341, 468, 555, 586
BfaI	CTAG	2 cut(s)	123, 495
BfmI	CTRYAG	3 cut(s)	239, 950, 1336
BfoI	RGCGCY	1 cut(s)	798
BisI	GCNGC	6 cut(s)	198, 242, 245, 741, 744, 1112
BlsI	GCNGC	6 cut(s)	199, 243, 246, 742, 745, 1113
Bme1390I	CCNGG	2 cut(s)	174, 1263
Bme18I	GGWCC	2 cut(s)	1035, 1268
BmgT120I	GGNCC	2 cut(s)	1035, 1268
BmiI	GGNNCC	3 cut(s)	228, 507, 1306
BmrFI	CCNGG	2 cut(s)	174, 1263
BmsI	GCATC	4 cut(s)	51, 755, 825, 1018
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	2 cut(s)	309, 541
BpuEI	CTTGAG	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	451
BsaJI	CCNNGG	6 cut(s)	172, 173, 515, 726, 943, 1291
Bsc4I	CCNNNNNNNGG	1 cut(s)	823
Bse118I	RCCGGY	1 cut(s)	1301
Bse1I	ACTGG	2 cut(s)	273, 779
Bse3DI	GCAATG	1 cut(s)	1296
Bse8I	GATNNNNATC	1 cut(s)	451
BseBI	CCWGG	2 cut(s)	174, 1263
BseDI	CCNNGG	6 cut(s)	172, 173, 515, 726, 943, 1291
BseGI	GGATG	4 cut(s)	70, 1121, 1236, 1254
BseJI	GATNNNNATC	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	823
BseMI	GCAATG	1 cut(s)	1296
BseMII	CTCAG	3 cut(s)	294, 344, 1032
BseNI	ACTGG	2 cut(s)	273, 779
BseRI	GAGGAG	3 cut(s)	193, 480, 996
BseXI	GCAGC	6 cut(s)	184, 253, 256, 727, 730, 1098
BshFI	GGCC	2 cut(s)	756, 1074
BshNI	GGYRCC	1 cut(s)	226
BsiHKAI	GWGCWC	3 cut(s)	557, 917, 1256
BsiSI	CCGG	1 cut(s)	1302
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	823
BsmAI	GTCTC	4 cut(s)	341, 468, 555, 586
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	2 cut(s)	756, 1074
Bsp1286I	GDGCHC	5 cut(s)	557, 917, 1091, 1238, 1256
Bsp143I	GATC	2 cut(s)	505, 574
Bsp19I	CCATGG	2 cut(s)	515, 726
BspANI	GGCC	2 cut(s)	756, 1074
BspCNI	CTCAG	3 cut(s)	293, 343, 1033
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	3 cut(s)	228, 507, 1306
BspMAI	CTGCAG	2 cut(s)	243, 954
BspPI	GGATC	2 cut(s)	500, 513
BspQI	GCTCTTC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	1296
BsrFI	RCCGGY	1 cut(s)	1301
BsrI	ACTGG	2 cut(s)	273, 779
BssAI	RCCGGY	1 cut(s)	1301
BssECI	CCNNGG	6 cut(s)	172, 173, 515, 726, 943, 1291
BssMI	GATC	2 cut(s)	505, 574
BssSI	CACGAG	1 cut(s)	1309
BssT1I	CCWWGG	4 cut(s)	515, 726, 943, 1291
Bst2BI	CACGAG	1 cut(s)	1309
Bst2UI	CCWGG	2 cut(s)	174, 1263
Bst4CI	ACNGT	2 cut(s)	358, 402
Bst6I	CTCTTC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	835
BstC8I	GCNNGC	2 cut(s)	382, 872
BstDEI	CTNAG	3 cut(s)	280, 330, 1041
BstDSI	CCRYGG	2 cut(s)	515, 726
BstF5I	GGATG	4 cut(s)	70, 1121, 1236, 1254
BstH2I	RGCGCY	1 cut(s)	798
BstHHI	GCGC	1 cut(s)	797
BstKTI	GATC	2 cut(s)	508, 577
BstMAI	GTCTC	4 cut(s)	341, 468, 555, 586
BstMBI	GATC	2 cut(s)	505, 574
BstMWI	GCNNNNNNNGC	6 cut(s)	165, 803, 835, 867, 1086, 1341
BstNI	CCWGG	2 cut(s)	174, 1263
BstNSI	RCATGY	4 cut(s)	384, 481, 626, 670
BstSCI	CCNGG	2 cut(s)	172, 1261
BstSFI	CTRYAG	3 cut(s)	239, 950, 1336
BstV1I	GCAGC	6 cut(s)	184, 253, 256, 727, 730, 1098
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	505
BstXI	CCANNNNNNTGG	3 cut(s)	516, 769, 1245
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	756, 1074
BtgI	CCRYGG	2 cut(s)	515, 726
BtsCI	GGATG	4 cut(s)	70, 1121, 1236, 1254
BtsI	GCAGTG	2 cut(s)	103, 595
BtsIMutI	CAGTG	3 cut(s)	103, 595, 1038
Cac8I	GCNNGC	2 cut(s)	382, 872
CaiI	CAGNNNCTG	1 cut(s)	1111
CciI	TCATGA	1 cut(s)	79
CfoI	GCGC	1 cut(s)	797
Cfr10I	RCCGGY	1 cut(s)	1301
Cfr13I	GGNCC	2 cut(s)	1035, 1268
CsiI	ACCWGGT	1 cut(s)	1261
Csp6I	GTAC	1 cut(s)	135
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	3 cut(s)	280, 330, 1041
DpnI	GATC	2 cut(s)	507, 576
DpnII	GATC	2 cut(s)	505, 574
DraI	TTTAAA	1 cut(s)	990
DraIII	CACNNNGTG	1 cut(s)	1265
EaeI	YGGCCR	2 cut(s)	754, 1072
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Ecl136II	GAGCTC	2 cut(s)	915, 1254
Eco130I	CCWWGG	4 cut(s)	515, 726, 943, 1291
Eco24I	GRGCYC	4 cut(s)	917, 1091, 1238, 1256
Eco47I	GGWCC	2 cut(s)	1035, 1268
Eco53kI	GAGCTC	2 cut(s)	915, 1254
Eco57I	CTGAAG	1 cut(s)	1299
EcoICRI	GAGCTC	2 cut(s)	915, 1254
EcoRI	GAATTC	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	172, 1261
EcoT14I	CCWWGG	4 cut(s)	515, 726, 943, 1291
EcoT38I	GRGCYC	4 cut(s)	917, 1091, 1238, 1256
ErhI	CCWWGG	4 cut(s)	515, 726, 943, 1291
FaqI	GGGAC	1 cut(s)	377
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	6 cut(s)	198, 242, 245, 741, 744, 1112
FokI	GGATG	4 cut(s)	57, 1108, 1243, 1261
FriOI	GRGCYC	4 cut(s)	917, 1091, 1238, 1256
Fsp4HI	GCNGC	6 cut(s)	198, 242, 245, 741, 744, 1112
FspBI	CTAG	2 cut(s)	123, 495
GlaI	GCGC	1 cut(s)	796
GluI	GCNGC	6 cut(s)	198, 242, 245, 741, 744, 1112
GsuI	CTGGAG	2 cut(s)	309, 541
HaeII	RGCGCY	1 cut(s)	798
HaeIII	GGCC	2 cut(s)	756, 1074
HapII	CCGG	1 cut(s)	1302
HhaI	GCGC	1 cut(s)	797
Hin6I	GCGC	1 cut(s)	795
HinP1I	GCGC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	1281
HinfI	GANTC	5 cut(s)	43, 235, 629, 733, 955
HpaII	CCGG	1 cut(s)	1302
HphI	GGTGA	8 cut(s)	8, 64, 70, 307, 409, 423, 742, 1157
Hpy166II	GTNNAC	3 cut(s)	137, 1038, 1268
Hpy188I	TCNGA	7 cut(s)	48, 208, 259, 333, 579, 960, 1210
Hpy188III	TCNNGA	7 cut(s)	80, 509, 558, 572, 615, 694, 781
Hpy8I	GTNNAC	3 cut(s)	137, 1038, 1268
HpyAV	CCTTC	1 cut(s)	693
HpyCH4III	ACNGT	2 cut(s)	358, 402
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	5 cut(s)	96, 241, 746, 952, 1097
HpyF10VI	GCNNNNNNNGC	6 cut(s)	165, 803, 835, 867, 1086, 1341
HpyF3I	CTNAG	3 cut(s)	280, 330, 1041
HpySE526I	ACGT	1 cut(s)	610
HspAI	GCGC	1 cut(s)	795
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	2 cut(s)	505, 574
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	6 cut(s)	440, 498, 560, 574, 826, 983
Lsp1109I	GCAGC	6 cut(s)	184, 253, 256, 727, 730, 1098
LweI	GCATC	4 cut(s)	51, 755, 825, 1018
MabI	ACCWGGT	1 cut(s)	1261
MaeI	CTAG	2 cut(s)	123, 495
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	4 cut(s)	730, 875, 963, 1222
MalI	GATC	2 cut(s)	507, 576
MboI	GATC	2 cut(s)	505, 574
MboII	GAAGA	4 cut(s)	49, 261, 350, 1178
MfeI	CAATTG	1 cut(s)	830
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	5 cut(s)	557, 917, 1091, 1238, 1256
MlsI	TGGCCA	2 cut(s)	756, 1074
MluCI	AATT	7 cut(s)	89, 312, 405, 830, 922, 991, 1367
MluNI	TGGCCA	2 cut(s)	756, 1074
MlyI	GAGTC	2 cut(s)	727, 964
Mox20I	TGGCCA	2 cut(s)	756, 1074
MscI	TGGCCA	2 cut(s)	756, 1074
MseI	TTAA	4 cut(s)	404, 989, 1100, 1380
MslI	CAYNNNNRTG	4 cut(s)	482, 520, 884, 1243
Msp20I	TGGCCA	2 cut(s)	756, 1074
MspI	CCGG	1 cut(s)	1302
MspR9I	CCNGG	2 cut(s)	174, 1263
MunI	CAATTG	1 cut(s)	830
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	2 cut(s)	174, 1263
MwoI	GCNNNNNNNGC	6 cut(s)	165, 803, 835, 867, 1086, 1341
NcoI	CCATGG	2 cut(s)	515, 726
NdeII	GATC	2 cut(s)	505, 574
NlaIV	GGNNCC	3 cut(s)	228, 507, 1306
NmuCI	GTSAC	3 cut(s)	730, 875, 963
NspI	RCATGY	4 cut(s)	384, 481, 626, 670
OliI	CACNNNNGTG	1 cut(s)	884
PaeI	GCATGC	1 cut(s)	384
PagI	TCATGA	1 cut(s)	79
PasI	CCCWGGG	1 cut(s)	173
PciI	ACATGT	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	333
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	3 cut(s)	43, 235, 629
PkrI	GCNGC	6 cut(s)	199, 243, 246, 742, 745, 1113
PleI	GAGTC	2 cut(s)	727, 963
PpsI	GAGTC	2 cut(s)	727, 963
PscI	ACATGT	1 cut(s)	477
PsiI	TTATAA	1 cut(s)	150
Psp124BI	GAGCTC	2 cut(s)	917, 1256
Psp6I	CCWGG	2 cut(s)	172, 1261
PspGI	CCWGG	2 cut(s)	172, 1261
PspN4I	GGNNCC	3 cut(s)	228, 507, 1306
PspPI	GGNCC	2 cut(s)	1035, 1268
PstI	CTGCAG	2 cut(s)	243, 954
PstNI	CAGNNNCTG	1 cut(s)	1111
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	4 cut(s)	482, 520, 884, 1243
SacI	GAGCTC	2 cut(s)	917, 1256
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	404, 989, 1100, 1380
SatI	GCNGC	6 cut(s)	198, 242, 245, 741, 744, 1112
Sau3AI	GATC	2 cut(s)	505, 574
Sau96I	GGNCC	2 cut(s)	1035, 1268
SchI	GAGTC	2 cut(s)	727, 964
ScrFI	CCNGG	2 cut(s)	174, 1263
SduI	GDGCHC	5 cut(s)	557, 917, 1091, 1238, 1256
SexAI	ACCWGGT	1 cut(s)	1261
SfaNI	GCATC	4 cut(s)	51, 755, 825, 1018
SfcI	CTRYAG	3 cut(s)	239, 950, 1336
SinI	GGWCC	2 cut(s)	1035, 1268
SmiMI	CAYNNNNRTG	4 cut(s)	482, 520, 884, 1243
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SphI	GCATGC	1 cut(s)	384
Sse9I	AATT	7 cut(s)	89, 312, 405, 830, 922, 991, 1367
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	2 cut(s)	123, 495
SstI	GAGCTC	2 cut(s)	917, 1256
StyD4I	CCNGG	2 cut(s)	172, 1261
StyI	CCWWGG	4 cut(s)	515, 726, 943, 1291
TaaI	ACNGT	2 cut(s)	358, 402
TaiI	ACGT	1 cut(s)	613
TasI	AATT	7 cut(s)	89, 312, 405, 830, 922, 991, 1367
TatI	WGTACW	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	43, 235, 629
Tru1I	TTAA	4 cut(s)	404, 989, 1100, 1380
Tru9I	TTAA	4 cut(s)	404, 989, 1100, 1380
TscAI	CASTG	3 cut(s)	103, 602, 1045
TseFI	GTSAC	3 cut(s)	730, 875, 963
TseI	GCWGC	6 cut(s)	197, 241, 244, 740, 743, 1111
Tsp45I	GTSAC	3 cut(s)	730, 875, 963
TspDTI	ATGAA	6 cut(s)	56, 675, 1012, 1110, 1179, 1233
TspRI	CASTG	3 cut(s)	103, 602, 1045
VpaK11BI	GGWCC	2 cut(s)	1035, 1268
XapI	RAATTY	3 cut(s)	312, 991, 1367
XceI	RCATGY	4 cut(s)	384, 481, 626, 670
XspI	CTAG	2 cut(s)	123, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.