Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007981

Physical Location & Seq

Genomic Coordinates Forward (+)

6410522 .. 6412911

Gene Structure 2390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG087000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGTGAATGTGAATGTTAGAATTCCTTTTACTCCAGCTCAGAGAGAAGAGCTTGAGACACAGACTGTGATTTACAAGTATATCATGGCATGCCTCCCTGTCCCTCAACAGTTAATTCTTTCCATCACCAACAATCTATCACCAAATGGAGCAAGAGACTCATCAAAAACAAGAGGAGTGAGAGACATGTTGGTGGGATTTTCTAGGAGCTTGGATCCAGAGCCATGGAGGTGTAAGAGAACCGATGGTAAGAAATGGAGGTGCTCCAGAGACATAGCTCCTGATCAGAAATATTGTGAGAGACACTGCCACAAAAGACGTTCAAGAAAGCGTGTGGAATCAATCCCCAACTTACTCAACAACAAGAATGCTAACATGCTAAATCCAAAGCCTTCATCTTTCAAGAATAACAATCAAACTCCATTTTCAAGTTCCATGGTGACTCCTGCTGCTGCATCACATGGCCAACCCAGAGCATTGGACTGGTTCGTGAATGGAGAAAGCGCCTCTGTTGCTGTTTCTAACCAAGAATGGGAGCAATTGATGCCATTCAAGTTGGGTTTGAAAAGCCACACCAGCAAGCGTGACACAGATGTGGATTTTCCAAAGCAACAAAATGAGAGCTCACTCAATTTGTGTAGGGGTGGTAGCCAAGGTCTGCAGAGTCAGAGGTCACATGACTATTTGGGAGGAGCTTTAAATTCAAATCAGGCACAACAGACAAGGCATTTCATTGATGCTTGGTCCACTGAGAGAGATGGTAATGGCATTGATGAGCTTGGCCAGAGGAAGAGGGGCTCTGTTGCATTAAACCAGAAGCTGCCCCTTTCATCCCTCACTCTATCAATGTCTGGTGAGAATAGTGAAGCCAATGAAGAAAATGGAAATAGGCAAATGGGTGTTGGGGTTTTCGGTTCAGAGAGGCAGAATGTAACATGGATGAGCCCACTTTCATGGATGAGCTCAACACCTGGCGGACCTTTGGCTGAAGCTTTGTGCCTTGGCATTGCCAGTTCCACAAGAGCAACAACAACCTCTAATGGCTGTAGAAGCTCAAACGCAGATGTTAGACAAGAATTTGATTTGATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

364

Amino Acids

40.44

Weight (kDa)

9.31

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	9 - 42	2.5e-11	QLQ
WRC	PF08879	73 - 111	4.4e-17	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24150 AT4G24150 AT4G24150
fragaria_vesca	FvH4_5g10750 FvH4_5g10750 FvH4_5g10750 FvH4_5g10750
malus_domestica	MD06G1121000.v1.1 MD14G1137600.v1.1
prunus_persica	Prupe.5G131600_v2.0.a1 Prupe.5G131600_v2.0.a1
pyrus_communis	pycom06g11230 pycom14g11280
rosa_chinensis	RchiOBHm_Chr7g0187381
rosa_laevigata	RLG00000004788
rosa_multiflora	Rmu_sc0002110.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267510
rosa_rugosa	Rorug06G0481200
rosa_samantha	Rh7AG085600 Rh7BG087000 Rh7CG086700 Rh7CG086800 Rh7DG087800
rosa_wichuraiana	Rw7G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	975
AclWI	GGATC	2 cut(s)	209, 222
AcoI	YGGCCR	2 cut(s)	463, 781
AcsI	RAATTY	3 cut(s)	21, 700, 1076
AcuI	CTGAAG	1 cut(s)	1008
AfiI	CCNNNNNNNGG	1 cut(s)	532
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	6 cut(s)	324, 403, 429, 553, 565, 705
AjnI	CCWGG	1 cut(s)	970
AleI	CACNNNNGTG	1 cut(s)	593
Alw21I	GWGCWC	3 cut(s)	266, 626, 965
Alw26I	GTCTC	5 cut(s)	50, 150, 177, 264, 295
AlwI	GGATC	2 cut(s)	209, 222
AlwNI	CAGNNNCTG	1 cut(s)	820
AoxI	GGCC	2 cut(s)	463, 781
ApeKI	GCWGC	3 cut(s)	449, 452, 820
ApoI	RAATTY	3 cut(s)	21, 700, 1076
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	2 cut(s)	744, 977
AsuHPI	GGTGA	5 cut(s)	16, 118, 132, 451, 866
AvaII	GGWCC	2 cut(s)	744, 977
BalI	TGGCCA	2 cut(s)	465, 783
BamHI	GGATCC	1 cut(s)	214
BanII	GRGCYC	4 cut(s)	626, 800, 947, 965
Bbv12I	GWGCWC	3 cut(s)	266, 626, 965
BbvI	GCAGC	3 cut(s)	436, 439, 807
BccI	CCATC	3 cut(s)	131, 239, 752
BciT130I	CCWGG	1 cut(s)	972
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	5 cut(s)	50, 150, 177, 264, 295
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	2 cut(s)	659, 1045
BfoI	RGCGCY	1 cut(s)	507
BisI	GCNGC	3 cut(s)	450, 453, 821
BlsI	GCNGC	3 cut(s)	451, 454, 822
Bme1390I	CCNGG	1 cut(s)	972
Bme18I	GGWCC	2 cut(s)	744, 977
BmgT120I	GGNCC	2 cut(s)	744, 977
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	972
BmsI	GCATC	3 cut(s)	464, 534, 727
BpmI	CTGGAG	2 cut(s)	18, 250
BpuEI	CTTGAG	1 cut(s)	74
BsaJI	CCNNGG	4 cut(s)	224, 435, 652, 1000
Bsc4I	CCNNNNNNNGG	1 cut(s)	532
Bse1I	ACTGG	2 cut(s)	488, 1011
Bse3DI	GCAATG	1 cut(s)	1005
BseBI	CCWGG	1 cut(s)	972
BseDI	CCNNGG	4 cut(s)	224, 435, 652, 1000
BseGI	GGATG	3 cut(s)	830, 945, 963
BseLI	CCNNNNNNNGG	1 cut(s)	532
BseMI	GCAATG	1 cut(s)	1005
BseMII	CTCAG	2 cut(s)	53, 741
BseNI	ACTGG	2 cut(s)	488, 1011
BseRI	GAGGAG	2 cut(s)	189, 705
BseXI	GCAGC	3 cut(s)	436, 439, 807
BshFI	GGCC	2 cut(s)	465, 783
BsiHKAI	GWGCWC	3 cut(s)	266, 626, 965
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	532
BsmAI	GTCTC	5 cut(s)	50, 150, 177, 264, 295
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	465, 783
Bsp1286I	GDGCHC	5 cut(s)	266, 626, 800, 947, 965
Bsp143I	GATC	2 cut(s)	214, 283
Bsp19I	CCATGG	2 cut(s)	224, 435
BspACI	CCGC	1 cut(s)	975
BspANI	GGCC	2 cut(s)	465, 783
BspCNI	CTCAG	2 cut(s)	52, 742
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	663
BspPI	GGATC	2 cut(s)	209, 222
BspQI	GCTCTTC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	1005
BsrI	ACTGG	2 cut(s)	488, 1011
BssECI	CCNNGG	4 cut(s)	224, 435, 652, 1000
BssMI	GATC	2 cut(s)	214, 283
BssT1I	CCWWGG	4 cut(s)	224, 435, 652, 1000
Bst2UI	CCWGG	1 cut(s)	972
Bst4CI	ACNGT	2 cut(s)	67, 111
Bst6I	CTCTTC	2 cut(s)	42, 785
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	91, 581
BstDEI	CTNAG	2 cut(s)	39, 750
BstDSI	CCRYGG	2 cut(s)	224, 435
BstF5I	GGATG	3 cut(s)	830, 945, 963
BstH2I	RGCGCY	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	2 cut(s)	217, 286
BstMAI	GTCTC	5 cut(s)	50, 150, 177, 264, 295
BstMBI	GATC	2 cut(s)	214, 283
BstMWI	GCNNNNNNNGC	4 cut(s)	512, 544, 576, 1050
BstNI	CCWGG	1 cut(s)	972
BstNSI	RCATGY	3 cut(s)	93, 190, 379
BstSCI	CCNGG	1 cut(s)	970
BstSFI	CTRYAG	2 cut(s)	659, 1045
BstV1I	GCAGC	3 cut(s)	436, 439, 807
BstX2I	RGATCY	1 cut(s)	214
BstXI	CCANNNNNNTGG	3 cut(s)	225, 478, 954
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	465, 783
BtgI	CCRYGG	2 cut(s)	224, 435
BtsCI	GGATG	3 cut(s)	830, 945, 963
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	304, 747
Cac8I	GCNNGC	2 cut(s)	91, 581
CaiI	CAGNNNCTG	1 cut(s)	820
CfoI	GCGC	1 cut(s)	506
Cfr13I	GGNCC	2 cut(s)	744, 977
DdeI	CTNAG	2 cut(s)	39, 750
DpnI	GATC	2 cut(s)	216, 285
DpnII	GATC	2 cut(s)	214, 283
DraI	TTTAAA	1 cut(s)	699
EaeI	YGGCCR	2 cut(s)	463, 781
Eam1104I	CTCTTC	2 cut(s)	42, 785
EarI	CTCTTC	2 cut(s)	42, 785
EciI	GGCGGA	1 cut(s)	990
Ecl136II	GAGCTC	2 cut(s)	624, 963
Eco130I	CCWWGG	4 cut(s)	224, 435, 652, 1000
Eco24I	GRGCYC	4 cut(s)	626, 800, 947, 965
Eco47I	GGWCC	2 cut(s)	744, 977
Eco53kI	GAGCTC	2 cut(s)	624, 963
Eco57I	CTGAAG	1 cut(s)	1008
EcoICRI	GAGCTC	2 cut(s)	624, 963
EcoRI	GAATTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	970
EcoT14I	CCWWGG	4 cut(s)	224, 435, 652, 1000
EcoT38I	GRGCYC	4 cut(s)	626, 800, 947, 965
ErhI	CCWWGG	4 cut(s)	224, 435, 652, 1000
FaqI	GGGAC	1 cut(s)	86
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	450, 453, 821
FokI	GGATG	3 cut(s)	817, 952, 970
FriOI	GRGCYC	4 cut(s)	626, 800, 947, 965
Fsp4HI	GCNGC	3 cut(s)	450, 453, 821
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	3 cut(s)	450, 453, 821
GsuI	CTGGAG	2 cut(s)	18, 250
HaeII	RGCGCY	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	465, 783
HhaI	GCGC	1 cut(s)	506
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	990
HinfI	GANTC	4 cut(s)	158, 338, 442, 664
HphI	GGTGA	5 cut(s)	16, 118, 132, 451, 866
Hpy166II	GTNNAC	1 cut(s)	747
Hpy188I	TCNGA	4 cut(s)	42, 288, 669, 919
Hpy188III	TCNNGA	6 cut(s)	218, 267, 281, 324, 403, 490
Hpy8I	GTNNAC	1 cut(s)	747
HpyAV	CCTTC	1 cut(s)	402
HpyCH4III	ACNGT	2 cut(s)	67, 111
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	3 cut(s)	455, 661, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	512, 544, 576, 1050
HpyF3I	CTNAG	2 cut(s)	39, 750
HpySE526I	ACGT	1 cut(s)	319
HspAI	GCGC	1 cut(s)	504
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	214, 283
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	6 cut(s)	149, 207, 269, 283, 535, 692
Lsp1109I	GCAGC	3 cut(s)	436, 439, 807
LweI	GCATC	3 cut(s)	464, 534, 727
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	4 cut(s)	439, 584, 672, 931
MalI	GATC	2 cut(s)	216, 285
MboI	GATC	2 cut(s)	214, 283
MboII	GAAGA	3 cut(s)	59, 802, 887
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	5 cut(s)	266, 626, 800, 947, 965
MlsI	TGGCCA	2 cut(s)	465, 783
MluCI	AATT	6 cut(s)	21, 114, 539, 631, 700, 1076
MluNI	TGGCCA	2 cut(s)	465, 783
MlyI	GAGTC	3 cut(s)	152, 436, 673
Mox20I	TGGCCA	2 cut(s)	465, 783
MscI	TGGCCA	2 cut(s)	465, 783
MseI	TTAA	4 cut(s)	113, 698, 809, 1089
MslI	CAYNNNNRTG	4 cut(s)	191, 229, 593, 952
Msp20I	TGGCCA	2 cut(s)	465, 783
MspR9I	CCNGG	1 cut(s)	972
MunI	CAATTG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	972
MwoI	GCNNNNNNNGC	4 cut(s)	512, 544, 576, 1050
NcoI	CCATGG	2 cut(s)	224, 435
NdeII	GATC	2 cut(s)	214, 283
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	3 cut(s)	439, 584, 672
NspI	RCATGY	3 cut(s)	93, 190, 379
OliI	CACNNNNGTG	1 cut(s)	593
PaeI	GCATGC	1 cut(s)	93
PciI	ACATGT	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	42
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	3 cut(s)	451, 454, 822
PleI	GAGTC	3 cut(s)	152, 436, 672
PpsI	GAGTC	3 cut(s)	152, 436, 672
PscI	ACATGT	1 cut(s)	186
Psp124BI	GAGCTC	2 cut(s)	626, 965
Psp6I	CCWGG	1 cut(s)	970
PspGI	CCWGG	1 cut(s)	970
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	2 cut(s)	744, 977
PstI	CTGCAG	1 cut(s)	663
PstNI	CAGNNNCTG	1 cut(s)	820
PsuI	RGATCY	1 cut(s)	214
RseI	CAYNNNNRTG	4 cut(s)	191, 229, 593, 952
SacI	GAGCTC	2 cut(s)	626, 965
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	4 cut(s)	113, 698, 809, 1089
SatI	GCNGC	3 cut(s)	450, 453, 821
Sau3AI	GATC	2 cut(s)	214, 283
Sau96I	GGNCC	2 cut(s)	744, 977
SchI	GAGTC	3 cut(s)	152, 436, 673
ScrFI	CCNGG	1 cut(s)	972
SduI	GDGCHC	5 cut(s)	266, 626, 800, 947, 965
SfaNI	GCATC	3 cut(s)	464, 534, 727
SfcI	CTRYAG	2 cut(s)	659, 1045
SinI	GGWCC	2 cut(s)	744, 977
SmiMI	CAYNNNNRTG	4 cut(s)	191, 229, 593, 952
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SphI	GCATGC	1 cut(s)	93
Sse9I	AATT	6 cut(s)	21, 114, 539, 631, 700, 1076
SsiI	CCGC	1 cut(s)	975
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	2 cut(s)	626, 965
StyD4I	CCNGG	1 cut(s)	970
StyI	CCWWGG	4 cut(s)	224, 435, 652, 1000
TaaI	ACNGT	2 cut(s)	67, 111
TaiI	ACGT	1 cut(s)	322
TasI	AATT	6 cut(s)	21, 114, 539, 631, 700, 1076
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	4 cut(s)	113, 698, 809, 1089
Tru9I	TTAA	4 cut(s)	113, 698, 809, 1089
TscAI	CASTG	2 cut(s)	311, 754
TseFI	GTSAC	3 cut(s)	439, 584, 672
TseI	GCWGC	3 cut(s)	449, 452, 820
Tsp45I	GTSAC	3 cut(s)	439, 584, 672
TspDTI	ATGAA	5 cut(s)	384, 721, 819, 888, 942
TspRI	CASTG	2 cut(s)	311, 754
VpaK11BI	GGWCC	2 cut(s)	744, 977
XapI	RAATTY	3 cut(s)	21, 700, 1076
XceI	RCATGY	3 cut(s)	93, 190, 379
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.