Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007981

Physical Location & Seq

Genomic Coordinates Reverse (-)

60539130 .. 60541430

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGAAGAGTAGGAGAAATGGGTTTGTGGAAACAGAAACAGAGTGTTGTGATATTGGGTTGGGTTTGATGATGGAAACCCATCACCAATCATTTCCTTGTAAGAAGATGAATCAGATGGTGATGGTGATGCCTCATCATGAGCCTCAATTTTGCAGTGGTGGTTTTGATGGAGAAACAGCTAGTAGTAATAGTACACCTTTGTTTTATAACACAAGCAACAACAGCAACCCAGGGATTACTGATATATACAATGCTGCCTCCTCTGATTTTGGTTCAGTTGTGGTGCCAAAGAATCTGCAGCAGCCTTACTACTCTGATAGTTTGTCTTTCAGTTCCTCAGTAGGTGGAATGGTGAATGTGAATGTTAGAATTCCTTTTACTCCAGCTCAGAGAGAAGAGCTTGAGACACAGACTGTGATTTACAAGTATATCATGGCATGCCTCCCTGTCCCTCAACAGTTAATTCTTTCCATCACCAACAATCCATCACCAAATGGAGCAAGAGACTCATCAAGAACAAGAGGAGTGAGAGACATGTTGGTGGGATTTTCTAGGAGCTTGGATCCAGAGCCATGGAGGTGTAAGAGAACCGATGGTAAGAAATGGAGGTGCTCCAGAGACACAGCTCCTGATCAGAAATATTGTGAGAGACACTGCCACAAAAGACGTTCAAGAAAGCATGTGGAATCAATCCCCAACTTACTCAACAACAAGAATGCTAACATGCTAAATCCAAAGCCTTCATCTTTCAAGAATAACAATCAAACTCTATTTTCAAGTTCCATGGTGACTCCTGCTGCTGCATCACATGGCCAACCCAGAGCATTGGACTGGTTCGTGAATGGAGAAAGCGCCTCTGTTGTTGTTTCTAACCAAGAATGGGAGCAATTGATGCCATTCAAGTTGGGTTTGAACAGCCACACCAGCAAGCGTGACACAGATGTGGATTTTCCAAAGCAACAAAATGAGAGCTCATTCAATTTGTATAGGGATGGTAGCCAAGGTCTGCAGAGTCAGAGGTCACATGACTATTTGGGAGGAGCTTTAAATTCAAATCAGGCACAACAGACAAGGCATTTCATTGATGCTTGGTCCACTGAGAGAGATGGTAATGGCATTGAAGAGCTTGGCCAGAGGAAGACGGGCTCTGTTGCATTAAACCAGAAGCTGCCCCTTTCATCCCTCACTCTATCAATGTCTGGTGAGAATAGTGAAGCCAATGAAGAAAATGGAAATAGGCAAATGGGTGTTGGGGTTTTCGGTTCAGAGAGGCAGAATGTAACATGGATGAGCCCACTTTCATGGATGAGCTCAACACCTGGTGGACCTTTGGCTGAAGCTTTGTGCCTTGGCATTGCCAGTTCCACAAGAGCAACAACAGCCTCTAATGGCTGTAGAAGCTCAAACGCAGATGTTAGACGAGAATTTGATTTGATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

480

Amino Acids

53.22

Weight (kDa)

7.98

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	125 - 158	3.6e-11	QLQ
WRC	PF08879	189 - 227	8.1e-17	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24150 AT4G24150 AT4G24150
fragaria_vesca	FvH4_5g10750 FvH4_5g10750 FvH4_5g10750 FvH4_5g10750
malus_domestica	MD06G1121000.v1.1 MD14G1137600.v1.1
prunus_persica	Prupe.5G131600_v2.0.a1 Prupe.5G131600_v2.0.a1
pyrus_communis	pycom06g11230 pycom14g11280
rosa_chinensis	RchiOBHm_Chr7g0187381
rosa_laevigata	RLG00000004788
rosa_multiflora	Rmu_sc0002110.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267510
rosa_rugosa	Rorug06G0481200
rosa_samantha	Rh7AG085600 Rh7BG087000 Rh7CG086700 Rh7CG086800 Rh7DG087800
rosa_wichuraiana	Rw7G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	557, 570
AcoI	YGGCCR	2 cut(s)	811, 1129
AcsI	RAATTY	3 cut(s)	369, 1048, 1424
AcuI	CTGAAG	1 cut(s)	1356
AdeI	CACNNNGTG	1 cut(s)	1322
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	880
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	8 cut(s)	672, 751, 777, 901, 913, 979, 1053, 1121
AjnI	CCWGG	2 cut(s)	229, 1318
AleI	CACNNNNGTG	1 cut(s)	941
Alw21I	GWGCWC	3 cut(s)	614, 974, 1313
Alw26I	GTCTC	5 cut(s)	398, 498, 525, 612, 643
AlwI	GGATC	2 cut(s)	557, 570
AlwNI	CAGNNNCTG	2 cut(s)	629, 1168
AoxI	GGCC	2 cut(s)	811, 1129
ApeKI	GCWGC	6 cut(s)	254, 298, 301, 797, 800, 1168
ApoI	RAATTY	3 cut(s)	369, 1048, 1424
AspLEI	GCGC	1 cut(s)	854
AspS9I	GGNCC	2 cut(s)	1092, 1325
AsuHPI	GGTGA	8 cut(s)	74, 130, 136, 364, 466, 480, 799, 1214
AvaII	GGWCC	2 cut(s)	1092, 1325
BalI	TGGCCA	2 cut(s)	813, 1131
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	4 cut(s)	974, 1148, 1295, 1313
BbsI	GAAGAC	1 cut(s)	1145
Bbv12I	GWGCWC	3 cut(s)	614, 974, 1313
BbvI	GCAGC	6 cut(s)	241, 310, 313, 784, 787, 1155
BciT130I	CCWGG	2 cut(s)	231, 1320
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	5 cut(s)	398, 498, 525, 612, 643
BfaI	CTAG	2 cut(s)	180, 552
BfmI	CTRYAG	3 cut(s)	296, 1007, 1393
BfoI	RGCGCY	1 cut(s)	855
BisI	GCNGC	6 cut(s)	255, 299, 302, 798, 801, 1169
BlsI	GCNGC	6 cut(s)	256, 300, 303, 799, 802, 1170
Bme1390I	CCNGG	2 cut(s)	231, 1320
Bme18I	GGWCC	2 cut(s)	1092, 1325
BmgT120I	GGNCC	2 cut(s)	1092, 1325
BmiI	GGNNCC	2 cut(s)	285, 564
BmrFI	CCNGG	2 cut(s)	231, 1320
BmsI	GCATC	4 cut(s)	117, 812, 882, 1075
BpiI	GAAGAC	1 cut(s)	1145
BpmI	CTGGAG	2 cut(s)	366, 598
BpuEI	CTTGAG	1 cut(s)	422
BsaJI	CCNNGG	6 cut(s)	229, 230, 572, 783, 1000, 1348
Bsc4I	CCNNNNNNNGG	1 cut(s)	880
Bse1I	ACTGG	2 cut(s)	836, 1359
Bse3DI	GCAATG	1 cut(s)	1353
BseBI	CCWGG	2 cut(s)	231, 1320
BseDI	CCNNGG	6 cut(s)	229, 230, 572, 783, 1000, 1348
BseGI	GGATG	4 cut(s)	997, 1178, 1293, 1311
BseLI	CCNNNNNNNGG	1 cut(s)	880
BseMI	GCAATG	1 cut(s)	1353
BseMII	CTCAG	3 cut(s)	351, 401, 1089
BseNI	ACTGG	2 cut(s)	836, 1359
BseRI	GAGGAG	3 cut(s)	250, 537, 1053
BseXI	GCAGC	6 cut(s)	241, 310, 313, 784, 787, 1155
BshFI	GGCC	2 cut(s)	813, 1131
BshNI	GGYRCC	1 cut(s)	283
BsiHKAI	GWGCWC	3 cut(s)	614, 974, 1313
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	880
BsmAI	GTCTC	5 cut(s)	398, 498, 525, 612, 643
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	2 cut(s)	813, 1131
Bsp1286I	GDGCHC	5 cut(s)	614, 974, 1148, 1295, 1313
Bsp143I	GATC	2 cut(s)	562, 631
Bsp19I	CCATGG	2 cut(s)	572, 783
BspANI	GGCC	2 cut(s)	813, 1131
BspCNI	CTCAG	3 cut(s)	350, 400, 1090
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	285, 564
BspMAI	CTGCAG	2 cut(s)	300, 1011
BspPI	GGATC	2 cut(s)	557, 570
BspQI	GCTCTTC	2 cut(s)	390, 1116
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	1353
BsrI	ACTGG	2 cut(s)	836, 1359
BssECI	CCNNGG	6 cut(s)	229, 230, 572, 783, 1000, 1348
BssMI	GATC	2 cut(s)	562, 631
BssT1I	CCWWGG	4 cut(s)	572, 783, 1000, 1348
Bst2UI	CCWGG	2 cut(s)	231, 1320
Bst4CI	ACNGT	2 cut(s)	415, 459
Bst6I	CTCTTC	2 cut(s)	390, 1116
BstAPI	GCANNNNNTGC	1 cut(s)	892
BstC8I	GCNNGC	2 cut(s)	439, 929
BstDEI	CTNAG	3 cut(s)	337, 387, 1098
BstDSI	CCRYGG	2 cut(s)	572, 783
BstF5I	GGATG	4 cut(s)	997, 1178, 1293, 1311
BstH2I	RGCGCY	1 cut(s)	855
BstHHI	GCGC	1 cut(s)	854
BstKTI	GATC	2 cut(s)	565, 634
BstMAI	GTCTC	5 cut(s)	398, 498, 525, 612, 643
BstMBI	GATC	2 cut(s)	562, 631
BstMWI	GCNNNNNNNGC	5 cut(s)	222, 892, 924, 1379, 1398
BstNI	CCWGG	2 cut(s)	231, 1320
BstNSI	RCATGY	4 cut(s)	441, 538, 683, 727
BstSCI	CCNGG	2 cut(s)	229, 1318
BstSFI	CTRYAG	3 cut(s)	296, 1007, 1393
BstV1I	GCAGC	6 cut(s)	241, 310, 313, 784, 787, 1155
BstV2I	GAAGAC	1 cut(s)	1145
BstX2I	RGATCY	1 cut(s)	562
BstXI	CCANNNNNNTGG	3 cut(s)	573, 826, 1302
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	813, 1131
BtgI	CCRYGG	2 cut(s)	572, 783
BtsCI	GGATG	4 cut(s)	997, 1178, 1293, 1311
BtsI	GCAGTG	2 cut(s)	160, 652
BtsIMutI	CAGTG	3 cut(s)	160, 652, 1095
Cac8I	GCNNGC	2 cut(s)	439, 929
CaiI	CAGNNNCTG	2 cut(s)	629, 1168
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	854
Cfr13I	GGNCC	2 cut(s)	1092, 1325
CsiI	ACCWGGT	1 cut(s)	1318
Csp6I	GTAC	1 cut(s)	192
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	3 cut(s)	337, 387, 1098
DpnI	GATC	2 cut(s)	564, 633
DpnII	GATC	2 cut(s)	562, 631
DraI	TTTAAA	1 cut(s)	1047
DraIII	CACNNNGTG	1 cut(s)	1322
EaeI	YGGCCR	2 cut(s)	811, 1129
Eam1104I	CTCTTC	2 cut(s)	390, 1116
EarI	CTCTTC	2 cut(s)	390, 1116
Ecl136II	GAGCTC	2 cut(s)	972, 1311
Eco130I	CCWWGG	4 cut(s)	572, 783, 1000, 1348
Eco24I	GRGCYC	4 cut(s)	974, 1148, 1295, 1313
Eco47I	GGWCC	2 cut(s)	1092, 1325
Eco53kI	GAGCTC	2 cut(s)	972, 1311
Eco57I	CTGAAG	1 cut(s)	1356
EcoICRI	GAGCTC	2 cut(s)	972, 1311
EcoRI	GAATTC	1 cut(s)	369
EcoRII	CCWGG	2 cut(s)	229, 1318
EcoT14I	CCWWGG	4 cut(s)	572, 783, 1000, 1348
EcoT38I	GRGCYC	4 cut(s)	974, 1148, 1295, 1313
ErhI	CCWWGG	4 cut(s)	572, 783, 1000, 1348
FaqI	GGGAC	1 cut(s)	434
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	6 cut(s)	255, 299, 302, 798, 801, 1169
FokI	GGATG	4 cut(s)	1004, 1165, 1300, 1318
FriOI	GRGCYC	4 cut(s)	974, 1148, 1295, 1313
Fsp4HI	GCNGC	6 cut(s)	255, 299, 302, 798, 801, 1169
FspBI	CTAG	2 cut(s)	180, 552
GlaI	GCGC	1 cut(s)	853
GluI	GCNGC	6 cut(s)	255, 299, 302, 798, 801, 1169
GsuI	CTGGAG	2 cut(s)	366, 598
HaeII	RGCGCY	1 cut(s)	855
HaeIII	GGCC	2 cut(s)	813, 1131
HhaI	GCGC	1 cut(s)	854
Hin6I	GCGC	1 cut(s)	852
HinP1I	GCGC	1 cut(s)	852
HindIII	AAGCTT	1 cut(s)	1338
HinfI	GANTC	6 cut(s)	109, 292, 506, 686, 790, 1012
HphI	GGTGA	8 cut(s)	74, 130, 136, 364, 466, 480, 799, 1214
Hpy166II	GTNNAC	3 cut(s)	194, 1095, 1325
Hpy188I	TCNGA	7 cut(s)	114, 265, 316, 390, 636, 1017, 1267
Hpy188III	TCNNGA	8 cut(s)	137, 513, 566, 615, 629, 672, 751, 838
Hpy8I	GTNNAC	3 cut(s)	194, 1095, 1325
HpyAV	CCTTC	1 cut(s)	750
HpyCH4III	ACNGT	2 cut(s)	415, 459
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	5 cut(s)	153, 298, 803, 1009, 1154
HpyF10VI	GCNNNNNNNGC	5 cut(s)	222, 892, 924, 1379, 1398
HpyF3I	CTNAG	3 cut(s)	337, 387, 1098
HpySE526I	ACGT	1 cut(s)	667
HspAI	GCGC	1 cut(s)	852
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	2 cut(s)	562, 631
LguI	GCTCTTC	2 cut(s)	390, 1116
LmnI	GCTCC	6 cut(s)	497, 555, 617, 631, 883, 1040
Lsp1109I	GCAGC	6 cut(s)	241, 310, 313, 784, 787, 1155
LweI	GCATC	4 cut(s)	117, 812, 882, 1075
MabI	ACCWGGT	1 cut(s)	1318
MaeI	CTAG	2 cut(s)	180, 552
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	4 cut(s)	787, 932, 1020, 1279
MalI	GATC	2 cut(s)	564, 633
MboI	GATC	2 cut(s)	562, 631
MboII	GAAGA	6 cut(s)	16, 115, 407, 1133, 1150, 1235
MfeI	CAATTG	1 cut(s)	887
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	5 cut(s)	614, 974, 1148, 1295, 1313
MlsI	TGGCCA	2 cut(s)	813, 1131
MluCI	AATT	7 cut(s)	146, 369, 462, 887, 979, 1048, 1424
MluNI	TGGCCA	2 cut(s)	813, 1131
MlyI	GAGTC	3 cut(s)	500, 784, 1021
Mox20I	TGGCCA	2 cut(s)	813, 1131
MscI	TGGCCA	2 cut(s)	813, 1131
MseI	TTAA	4 cut(s)	461, 1046, 1157, 1437
MslI	CAYNNNNRTG	4 cut(s)	539, 577, 941, 1300
Msp20I	TGGCCA	2 cut(s)	813, 1131
MspR9I	CCNGG	2 cut(s)	231, 1320
MunI	CAATTG	1 cut(s)	887
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	2 cut(s)	231, 1320
MwoI	GCNNNNNNNGC	5 cut(s)	222, 892, 924, 1379, 1398
NcoI	CCATGG	2 cut(s)	572, 783
NdeII	GATC	2 cut(s)	562, 631
NlaIV	GGNNCC	2 cut(s)	285, 564
NmuCI	GTSAC	3 cut(s)	787, 932, 1020
NspI	RCATGY	4 cut(s)	441, 538, 683, 727
OliI	CACNNNNGTG	1 cut(s)	941
PaeI	GCATGC	1 cut(s)	441
PagI	TCATGA	1 cut(s)	136
PasI	CCCWGGG	1 cut(s)	230
PciI	ACATGT	1 cut(s)	534
PciSI	GCTCTTC	2 cut(s)	390, 1116
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	3 cut(s)	109, 292, 686
PkrI	GCNGC	6 cut(s)	256, 300, 303, 799, 802, 1170
PleI	GAGTC	3 cut(s)	500, 784, 1020
PpsI	GAGTC	3 cut(s)	500, 784, 1020
PscI	ACATGT	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	207
Psp124BI	GAGCTC	2 cut(s)	974, 1313
Psp6I	CCWGG	2 cut(s)	229, 1318
PspGI	CCWGG	2 cut(s)	229, 1318
PspN4I	GGNNCC	2 cut(s)	285, 564
PspPI	GGNCC	2 cut(s)	1092, 1325
PstI	CTGCAG	2 cut(s)	300, 1011
PstNI	CAGNNNCTG	2 cut(s)	629, 1168
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	4 cut(s)	539, 577, 941, 1300
SacI	GAGCTC	2 cut(s)	974, 1313
SapI	GCTCTTC	2 cut(s)	390, 1116
SaqAI	TTAA	4 cut(s)	461, 1046, 1157, 1437
SatI	GCNGC	6 cut(s)	255, 299, 302, 798, 801, 1169
Sau3AI	GATC	2 cut(s)	562, 631
Sau96I	GGNCC	2 cut(s)	1092, 1325
SchI	GAGTC	3 cut(s)	500, 784, 1021
ScrFI	CCNGG	2 cut(s)	231, 1320
SduI	GDGCHC	5 cut(s)	614, 974, 1148, 1295, 1313
SexAI	ACCWGGT	1 cut(s)	1318
SfaNI	GCATC	4 cut(s)	117, 812, 882, 1075
SfcI	CTRYAG	3 cut(s)	296, 1007, 1393
SinI	GGWCC	2 cut(s)	1092, 1325
SmiMI	CAYNNNNRTG	4 cut(s)	539, 577, 941, 1300
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	7 cut(s)	146, 369, 462, 887, 979, 1048, 1424
SspI	AATATT	1 cut(s)	641
SspMI	CTAG	2 cut(s)	180, 552
SstI	GAGCTC	2 cut(s)	974, 1313
StyD4I	CCNGG	2 cut(s)	229, 1318
StyI	CCWWGG	4 cut(s)	572, 783, 1000, 1348
TaaI	ACNGT	2 cut(s)	415, 459
TaiI	ACGT	1 cut(s)	670
TasI	AATT	7 cut(s)	146, 369, 462, 887, 979, 1048, 1424
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	3 cut(s)	109, 292, 686
Tru1I	TTAA	4 cut(s)	461, 1046, 1157, 1437
Tru9I	TTAA	4 cut(s)	461, 1046, 1157, 1437
TscAI	CASTG	3 cut(s)	160, 659, 1102
TseFI	GTSAC	3 cut(s)	787, 932, 1020
TseI	GCWGC	6 cut(s)	254, 298, 301, 797, 800, 1168
Tsp45I	GTSAC	3 cut(s)	787, 932, 1020
TspDTI	ATGAA	7 cut(s)	17, 122, 732, 1069, 1167, 1236, 1290
TspRI	CASTG	3 cut(s)	160, 659, 1102
VpaK11BI	GGWCC	2 cut(s)	1092, 1325
XapI	RAATTY	3 cut(s)	369, 1048, 1424
XceI	RCATGY	4 cut(s)	441, 538, 683, 727
XspI	CTAG	2 cut(s)	180, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.